Wall clock time and date at job start Wed Apr 1 2020 03:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47459 * 2 1 4 4 N 1.46498 * 109.46754 * 239.99455 * 2 1 3 5 5 C 1.36938 * 120.00301 * 85.00395 * 4 2 1 6 6 H 1.08003 * 119.99630 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00553 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00443 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46793 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47021 * 120.00223 * 9 7 5 12 12 H 1.48501 * 109.47264 * 240.00339 * 9 7 5 13 13 C 1.53002 * 109.46820 * 120.00013 * 2 1 3 14 14 C 1.53041 * 109.46417 * 60.02308 * 13 2 1 15 15 C 1.53194 * 109.31276 * 178.60324 * 14 13 2 16 16 N 1.46922 * 108.76672 * 54.65539 * 15 14 13 17 17 C 1.34773 * 120.63351 * 126.36171 * 16 15 14 18 18 O 1.21597 * 120.00513 * 176.12288 * 17 16 15 19 19 C 1.47428 * 119.99567 * 356.12250 * 17 16 15 20 20 C 1.39973 * 120.61369 * 53.30656 * 19 17 16 21 21 C 1.38333 * 118.36924 * 180.02562 * 20 19 17 22 22 C 1.38367 * 119.50892 * 0.02562 * 21 20 19 23 23 N 1.31851 * 121.22212 * 0.02562 * 22 21 20 24 24 C 1.32438 * 121.77118 * 359.65664 * 23 22 21 25 25 N 1.38263 * 119.82621 * 180.31278 * 24 23 22 26 26 C 1.46897 * 110.99911 * 304.55593 * 25 24 23 27 27 C 1.46897 * 110.99819 * 68.50874 * 25 24 23 28 28 C 1.46932 * 118.73839 * 306.38252 * 16 15 14 29 29 C 1.53045 * 109.45856 * 299.96633 * 13 2 1 30 30 H 1.09005 * 109.46981 * 59.99933 * 1 2 3 31 31 H 1.09006 * 109.47015 * 300.00602 * 1 2 3 32 32 H 1.08995 * 109.48046 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00164 * 264.99943 * 4 2 1 34 34 H 0.96997 * 119.99939 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46073 * 179.97438 * 13 2 1 36 36 H 1.09005 * 109.49598 * 298.56867 * 14 13 2 37 37 H 1.08995 * 109.49760 * 58.66106 * 14 13 2 38 38 H 1.09002 * 109.59565 * 294.86925 * 15 14 13 39 39 H 1.08998 * 109.70046 * 174.50507 * 15 14 13 40 40 H 1.08001 * 120.81270 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.24428 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.39037 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47433 * 60.00483 * 26 25 24 44 44 H 1.08998 * 109.46756 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47137 * 299.99720 * 26 25 24 46 46 H 1.09005 * 109.47583 * 55.00650 * 27 25 24 47 47 H 1.09004 * 109.47107 * 175.00720 * 27 25 24 48 48 H 1.09002 * 109.47690 * 295.00532 * 27 25 24 49 49 H 1.08996 * 109.58508 * 293.82293 * 28 16 15 50 50 H 1.08998 * 109.70498 * 173.46528 * 28 16 15 51 51 H 1.08997 * 109.50148 * 301.34063 * 29 13 2 52 52 H 1.09006 * 109.49683 * 61.40672 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1961 5 6 2.1491 -0.0078 -2.3758 6 1 1.8927 1.0403 -2.4242 7 6 2.6122 -0.6620 -3.5090 8 7 2.9251 -1.9392 -3.4498 9 14 2.7913 0.2698 -5.1180 10 1 2.3775 1.6823 -4.9206 11 1 4.2084 0.2268 -5.5598 12 1 1.9310 -0.3586 -6.1525 13 6 2.0399 -0.7213 1.2493 14 6 1.5301 -2.1643 1.2488 15 6 2.0712 -2.8932 2.4828 16 7 1.7084 -2.1257 3.6820 17 6 1.0549 -2.7150 4.7028 18 8 0.8225 -2.0884 5.7186 19 6 0.6219 -4.1196 4.5879 20 6 1.5363 -5.1214 4.2423 21 6 1.0796 -6.4237 4.1470 22 6 -0.2542 -6.6979 4.3926 23 7 -1.1006 -5.7400 4.7160 24 6 -0.7157 -4.4777 4.8272 25 7 -1.6361 -3.5063 5.1749 26 6 -2.7792 -3.5099 4.2523 27 6 -2.0807 -3.6758 6.5647 28 6 2.0711 -0.7034 3.7470 29 6 1.5303 0.0009 2.4987 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5140 0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 3.2484 -2.3965 -4.2417 35 1 3.1299 -0.7216 1.2489 36 1 0.4404 -2.1651 1.2742 37 1 1.8738 -2.6712 0.3472 38 1 3.1562 -2.9724 2.4141 39 1 1.6349 -3.8903 2.5413 40 1 2.5727 -4.8833 4.0538 41 1 1.7590 -7.2204 3.8821 42 1 -0.6087 -7.7153 4.3173 43 1 -3.2692 -4.4830 4.2846 44 1 -3.4875 -2.7361 4.5485 45 1 -2.4290 -3.3128 3.2391 46 1 -1.2134 -3.6880 7.2248 47 1 -2.7353 -2.8488 6.8402 48 1 -2.6235 -4.6162 6.6605 49 1 3.1560 -0.6042 3.7814 50 1 1.6345 -0.2531 4.6385 51 1 1.8741 1.0352 2.4868 52 1 0.4405 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713683776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:49 Heat of formation + Delta-G solvation = 12.942281 kcal Electronic energy + Delta-G solvation = -31846.291967 eV Core-core repulsion = 27845.725068 eV Total energy + Delta-G solvation = -4000.566899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08762 -40.70639 -39.10829 -37.96208 -36.78430 -34.75885 -33.82921 -32.31747 -31.90367 -31.49062 -29.83253 -28.63050 -26.96663 -26.24781 -25.88493 -24.87371 -24.31559 -22.88193 -22.53982 -21.00045 -19.84412 -19.23786 -18.36112 -18.16322 -17.88593 -17.08147 -16.69266 -16.37964 -16.06265 -16.04923 -15.74554 -15.43800 -15.33237 -15.13112 -15.03778 -14.47382 -14.39029 -14.27391 -14.15699 -14.02212 -13.63069 -13.49105 -13.23434 -13.05963 -13.00537 -12.95174 -12.87301 -12.78043 -12.76503 -12.65243 -12.09716 -12.00388 -11.75385 -11.59382 -11.29765 -11.19908 -11.10690 -10.90792 -10.83714 -10.57066 -10.04488 -9.68088 -9.58203 -8.94720 -7.90823 -5.16911 -0.25325 0.10059 1.48049 1.48830 1.58004 1.63929 2.01729 2.58516 2.59714 2.65294 3.30870 3.42835 3.57837 3.77720 3.81551 3.88701 3.93612 3.99743 4.07085 4.14201 4.26878 4.32959 4.33487 4.35832 4.39540 4.48278 4.52374 4.55098 4.60182 4.67059 4.73699 4.80194 4.85083 4.87002 4.89659 4.94173 4.96715 5.01589 5.04780 5.10069 5.14120 5.27555 5.34537 5.40971 5.44332 5.56050 5.61461 5.71927 5.74787 6.16082 6.33164 6.37263 6.79401 7.14410 7.39605 8.17783 8.41227 9.32843 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.002742 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.814020 B =10208.219973 C =10676.315799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 H 0.040 0.960 4 N -0.734 5.734 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.296 1.296 13 C -0.079 4.079 14 C -0.119 4.119 15 C 0.108 3.892 16 N -0.600 5.600 17 C 0.577 3.423 18 O -0.558 6.558 19 C -0.173 4.173 20 C -0.046 4.046 21 C -0.166 4.166 22 C 0.124 3.876 23 N -0.532 5.532 24 C 0.318 3.682 25 N -0.509 5.509 26 C 0.034 3.966 27 C 0.045 3.955 28 C 0.117 3.883 29 C -0.117 4.117 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.191 0.809 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.040 0.960 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -8.703 20.140 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.058 0.942 4 N -0.376 5.376 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.224 1.224 13 C -0.098 4.098 14 C -0.158 4.158 15 C -0.014 4.014 16 N -0.332 5.332 17 C 0.365 3.635 18 O -0.437 6.437 19 C -0.180 4.180 20 C -0.072 4.072 21 C -0.185 4.185 22 C -0.035 4.035 23 N -0.245 5.245 24 C 0.090 3.910 25 N -0.232 5.232 26 C -0.112 4.112 27 C -0.102 4.102 28 C -0.004 4.004 29 C -0.156 4.156 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.181 0.819 41 H 0.199 0.801 42 H 0.208 0.792 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.106 0.894 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.775 -7.908 20.690 22.891 hybrid contribution 0.515 -0.355 -1.482 1.609 sum -5.260 -8.263 19.208 21.561 Atomic orbital electron populations 1.22368 0.98510 1.00544 1.00056 1.20410 0.92313 0.94890 0.85979 0.94167 1.42682 1.78293 1.10523 1.06083 1.19622 1.34262 0.94018 0.88571 0.91171 1.25425 1.03372 0.96887 1.01028 1.69794 1.52972 1.09956 1.29145 0.85189 0.76728 0.78178 0.80406 1.19411 1.22148 1.22382 1.21238 0.99949 0.94745 0.93851 1.21832 1.00546 0.96022 0.97382 1.22029 1.01133 0.95321 0.82926 1.48067 1.56539 1.11310 1.17313 1.17987 0.76486 0.86246 0.82819 1.90727 1.56664 1.65670 1.30628 1.20659 0.95121 0.94942 1.07236 1.22087 1.00356 0.92324 0.92436 1.22492 0.97726 0.97459 1.00865 1.23398 0.90031 0.99019 0.91071 1.67852 1.40196 1.01024 1.15402 1.19785 0.90479 0.87662 0.93083 1.59835 1.15206 1.42876 1.05257 1.22358 0.91604 1.01871 0.95410 1.22271 1.00359 1.01398 0.86129 1.21629 1.00560 0.79459 0.98794 1.21916 1.01078 0.99842 0.92755 0.95218 0.91607 0.93943 0.79087 0.94184 0.91401 0.92466 0.91830 0.89367 0.88852 0.81943 0.80121 0.79232 0.93715 0.89289 0.92605 0.92483 0.89382 0.94092 0.89997 0.89761 0.89376 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 8.79 71.98 0.63 -4.83 16 2 C 0.17 6.46 2.72 44.99 0.12 6.59 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 N -0.73 -35.45 5.04 -322.96 -1.63 -37.07 16 5 C -0.23 -12.65 9.93 84.03 0.83 -11.82 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 7 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 8 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 9 Si 0.96 45.76 29.55 68.60 2.03 47.79 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 C -0.08 -2.33 2.14 -10.76 -0.02 -2.35 16 14 C -0.12 -3.42 4.81 30.67 0.15 -3.27 16 15 C 0.11 2.43 5.53 86.36 0.48 2.91 16 16 N -0.60 -14.74 2.97 -822.79 -2.45 -17.18 16 17 C 0.58 16.05 6.86 86.66 0.59 16.65 16 18 O -0.56 -18.96 16.09 -4.02 -0.06 -19.03 16 19 C -0.17 -4.17 4.93 -19.88 -0.10 -4.27 16 20 C -0.05 -0.77 7.54 22.71 0.17 -0.60 16 21 C -0.17 -2.07 10.09 22.32 0.23 -1.85 16 22 C 0.12 1.88 11.16 84.72 0.95 2.82 16 23 N -0.53 -11.80 9.57 -192.51 -1.84 -13.64 16 24 C 0.32 8.01 5.33 133.65 0.71 8.72 16 25 N -0.51 -12.95 4.06 -751.05 -3.05 -15.99 16 26 C 0.03 0.76 9.39 127.69 1.20 1.95 16 27 C 0.04 0.98 9.46 127.69 1.21 2.19 16 28 C 0.12 2.75 6.42 86.36 0.55 3.31 16 29 C -0.12 -2.88 4.97 30.67 0.15 -2.73 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.94 6.46 -2.38 -0.02 1.92 16 32 H 0.04 1.52 6.46 -2.39 -0.02 1.51 16 33 H 0.38 19.11 6.04 -92.70 -0.56 18.55 16 34 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.75 6.51 -2.38 -0.02 1.73 16 37 H 0.06 2.12 6.46 -2.39 -0.02 2.10 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.91 4.69 -2.39 -0.01 1.89 16 40 H 0.16 2.05 7.36 -2.91 -0.02 2.03 16 41 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.04 0.95 7.75 -2.39 -0.02 0.94 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.38 8.11 -2.38 -0.02 1.36 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.04 0.83 8.11 -2.39 -0.02 0.81 16 49 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.08 2.13 7.03 -2.39 -0.02 2.11 16 51 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.06 1.67 6.51 -2.38 -0.02 1.65 16 Total: -1.00 -71.96 404.20 1.97 -69.99 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.36 Total: 32.90 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 8.32 Total: 9.64 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -8.68 Total: -141.30 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.03 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.96 1.97 -69.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713683776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.934 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds