Wall clock time and date at job start Wed Apr 1 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47397 * 2 1 4 4 N 1.46497 * 109.47542 * 239.99533 * 2 1 3 5 5 C 1.36940 * 120.00074 * 84.99661 * 4 2 1 6 6 H 1.08001 * 119.99502 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99585 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00377 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47098 * 89.99774 * 9 7 5 11 11 H 1.48498 * 109.47318 * 210.00321 * 9 7 5 12 12 H 1.48507 * 109.46898 * 329.99960 * 9 7 5 13 13 C 1.53003 * 109.47113 * 119.99741 * 2 1 3 14 14 H 1.08996 * 109.52860 * 179.97438 * 13 2 1 15 15 C 1.53043 * 109.49441 * 300.00061 * 13 2 1 16 16 C 1.53050 * 109.52468 * 181.30961 * 15 13 2 17 17 C 1.53190 * 109.31319 * 298.63975 * 16 15 13 18 18 N 1.46933 * 108.77257 * 54.63557 * 17 16 15 19 19 C 1.34771 * 120.62772 * 126.37336 * 18 17 16 20 20 O 1.21604 * 120.00076 * 174.69049 * 19 18 17 21 21 C 1.47414 * 120.00230 * 354.68394 * 19 18 17 22 22 N 1.31874 * 125.93382 * 353.76936 * 21 19 18 23 23 C 1.33368 * 109.15494 * 179.79163 * 22 21 19 24 24 C 1.34877 * 108.15739 * 0.41206 * 23 22 21 25 25 N 1.35674 * 107.36880 * 359.80395 * 24 23 22 26 26 C 1.46443 * 124.57517 * 179.84398 * 25 24 23 27 27 C 1.53286 * 108.74998 * 342.78435 * 26 25 24 28 28 C 1.53148 * 109.60016 * 50.53789 * 27 26 25 29 29 C 1.50763 * 128.32571 * 179.84736 * 24 23 22 30 30 C 1.46924 * 118.73875 * 306.39110 * 18 17 16 31 31 H 1.08997 * 109.47466 * 300.00392 * 1 2 3 32 32 H 1.09002 * 109.46983 * 60.00248 * 1 2 3 33 33 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 34 34 H 0.97005 * 120.00130 * 265.00279 * 4 2 1 35 35 H 0.97006 * 119.99525 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46340 * 61.29880 * 15 13 2 37 37 H 1.09005 * 109.46020 * 301.31904 * 15 13 2 38 38 H 1.08999 * 109.49828 * 58.59368 * 16 15 13 39 39 H 1.09004 * 109.49432 * 178.69335 * 16 15 13 40 40 H 1.08990 * 109.58781 * 174.42379 * 17 16 15 41 41 H 1.09000 * 109.58432 * 294.85249 * 17 16 15 42 42 H 1.08000 * 125.92415 * 180.11962 * 23 22 21 43 43 H 1.08999 * 109.59119 * 102.55771 * 26 25 24 44 44 H 1.09004 * 109.59410 * 223.00552 * 26 25 24 45 45 H 1.08997 * 109.45474 * 170.58015 * 27 26 25 46 46 H 1.09005 * 109.44503 * 290.53374 * 27 26 25 47 47 H 1.09004 * 109.50433 * 50.45421 * 28 27 26 48 48 H 1.08998 * 109.50963 * 170.59609 * 28 27 26 49 49 H 1.09003 * 109.73017 * 44.59057 * 29 24 23 50 50 H 1.09001 * 109.76937 * 283.92990 * 29 24 23 51 51 H 1.08995 * 109.58519 * 173.39906 * 30 18 17 52 52 H 1.09004 * 109.58466 * 293.81960 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5091 8 7 2.7376 -0.0056 -4.6428 9 14 3.0545 -2.4750 -3.4254 10 1 1.8567 -3.2926 -3.7449 11 1 4.1298 -2.7676 -4.4069 12 1 3.5293 -2.8059 -2.0578 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7222 1.2500 15 6 1.5301 -0.0001 2.4992 16 6 2.0666 -0.7017 3.7491 17 6 1.5532 -2.1447 3.7799 18 7 1.9148 -2.8023 2.5167 19 6 2.5904 -3.9684 2.5184 20 8 2.7996 -4.5515 1.4720 21 6 3.0759 -4.5371 3.7889 22 7 3.0180 -3.9537 4.9701 23 6 3.5473 -4.7661 5.8859 24 6 3.9586 -5.8898 5.2634 25 7 3.6669 -5.7526 3.9455 26 6 3.9575 -6.7579 2.9210 27 6 4.9918 -7.7432 3.4770 28 6 4.5345 -8.2487 4.8484 29 6 4.6222 -7.1024 5.8651 30 6 1.5263 -2.1641 1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1524 35 1 3.0603 -0.4631 -5.4350 36 1 0.4403 -0.0203 2.5111 37 1 1.8741 1.0342 2.4875 38 1 3.1563 -0.7037 3.7258 39 1 1.7222 -0.1741 4.6386 40 1 2.0108 -2.6776 4.6133 41 1 0.4693 -2.1445 3.8945 42 1 3.6358 -4.5583 6.9420 43 1 3.0434 -7.2935 2.6649 44 1 4.3586 -6.2694 2.0330 45 1 5.0929 -8.5869 2.7944 46 1 5.9539 -7.2408 3.5782 47 1 3.5043 -8.5986 4.7823 48 1 5.1783 -9.0683 5.1675 49 1 4.1082 -7.3853 6.7838 50 1 5.6674 -6.8815 6.0813 51 1 1.9661 -2.7099 0.4169 52 1 0.4401 -2.1656 1.1601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715345623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:15 Heat of formation + Delta-G solvation = 43.548022 kcal Electronic energy + Delta-G solvation = -31850.241963 eV Core-core repulsion = 27851.002229 eV Total energy + Delta-G solvation = -3999.239734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.86504 -39.99228 -37.88929 -37.17884 -35.51569 -33.33385 -32.96398 -31.82684 -31.16029 -30.08806 -28.80861 -27.87618 -25.72568 -24.89628 -24.30479 -22.97709 -22.86592 -22.22207 -21.00257 -20.09831 -19.24288 -18.68933 -17.75163 -17.12599 -16.56739 -16.48214 -15.65327 -15.14395 -14.77789 -14.71937 -14.63196 -14.52242 -14.43523 -14.14107 -14.05349 -14.00847 -13.75369 -13.26862 -13.00703 -12.91297 -12.60270 -12.52685 -12.38331 -12.04810 -11.64749 -11.59105 -11.53827 -11.46508 -11.38750 -11.09508 -10.88151 -10.62263 -10.50447 -10.31412 -10.21612 -10.04064 -9.99469 -9.91728 -9.50890 -9.33760 -8.86574 -8.75264 -8.40188 -7.20457 -5.70804 -3.05640 1.18029 2.16818 2.34766 3.11151 3.28391 3.45702 3.51833 3.54106 3.98870 4.09487 4.12927 4.22734 4.34098 4.66781 4.75567 4.81316 4.90870 4.93676 4.98585 5.08489 5.15191 5.20753 5.24929 5.26031 5.30536 5.39948 5.43770 5.45916 5.52151 5.60268 5.63895 5.71307 5.76599 5.87316 5.92382 5.94982 6.09586 6.13598 6.17366 6.24526 6.33169 6.40384 6.41256 6.54234 6.58630 6.67938 6.84769 6.90572 7.09973 7.33531 7.58016 8.05989 8.09618 8.48533 9.27489 10.00653 10.20145 11.47599 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003265 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.568590 B = 8573.103491 C =10453.198817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.239 4.239 6 H 0.091 0.909 7 C 0.005 3.995 8 N -0.936 5.936 9 Si 0.878 3.122 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.274 1.274 13 C -0.106 4.106 14 H 0.074 0.926 15 C -0.116 4.116 16 C -0.127 4.127 17 C 0.056 3.944 18 N -0.581 5.581 19 C 0.599 3.401 20 O -0.541 6.541 21 C 0.158 3.842 22 N -0.443 5.443 23 C -0.025 4.025 24 C -0.002 4.002 25 N -0.407 5.407 26 C 0.099 3.901 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.048 4.048 30 C 0.115 3.885 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.361 0.639 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.058 0.942 42 H 0.178 0.822 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -14.793 27.193 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.394 5.394 5 C -0.369 4.369 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.200 1.200 13 C -0.126 4.126 14 H 0.092 0.908 15 C -0.154 4.154 16 C -0.165 4.165 17 C -0.067 4.067 18 N -0.312 5.312 19 C 0.384 3.616 20 O -0.418 6.418 21 C -0.101 4.101 22 N -0.164 5.164 23 C -0.176 4.176 24 C -0.122 4.122 25 N -0.087 5.087 26 C -0.022 4.022 27 C -0.174 4.174 28 C -0.165 4.165 29 C -0.086 4.086 30 C -0.006 4.006 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.195 0.805 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.195 0.805 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.466 -14.243 26.360 29.998 hybrid contribution 0.597 -1.907 -0.345 2.028 sum 2.063 -16.149 26.015 30.689 Atomic orbital electron populations 1.22535 0.98955 1.00877 1.00579 1.20156 0.92037 0.95591 0.84648 0.92332 1.42895 1.79705 1.09577 1.07203 1.19074 1.36708 0.95580 0.85567 0.89169 1.24639 1.01491 0.97363 0.95598 1.69707 1.52963 1.35491 1.00233 0.86637 0.78239 0.86981 0.77331 1.21059 1.21796 1.20009 1.21811 1.01028 0.93931 0.95836 0.90803 1.21658 1.00903 0.99226 0.93619 1.21829 1.01209 0.95308 0.98156 1.23117 1.00502 0.94831 0.88203 1.47808 1.53709 1.20708 1.08935 1.16580 0.78559 0.81449 0.85034 1.90836 1.58593 1.60534 1.31806 1.22552 1.06525 0.85787 0.95267 1.69786 1.19609 1.28956 0.98083 1.22112 1.04580 0.91144 0.99803 1.21322 1.06803 1.00378 0.83696 1.44967 1.41491 1.14230 1.08022 1.22245 1.00690 0.88872 0.90439 1.21959 0.98618 0.99066 0.97751 1.21695 1.02573 0.97948 0.94305 1.20309 1.00513 0.89542 0.98207 1.21904 1.00281 0.93443 0.84984 0.93790 0.92380 0.93462 0.80547 0.93161 0.91407 0.91587 0.91840 0.91038 0.82740 0.92320 0.80497 0.89124 0.87316 0.89042 0.90572 0.91199 0.90197 0.89012 0.89537 0.89010 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.79 37.15 0.33 -2.63 16 2 C 0.19 3.60 2.72 -67.93 -0.18 3.41 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.75 -18.27 4.85 -53.43 -0.26 -18.53 16 5 C -0.24 -6.90 10.41 -15.06 -0.16 -7.05 16 6 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 8 N -0.94 -30.13 13.97 55.49 0.78 -29.35 16 9 Si 0.88 23.36 27.74 -169.99 -4.71 18.64 16 10 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 11 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 12 H -0.27 -7.12 6.52 56.52 0.37 -6.75 16 13 C -0.11 -1.75 2.33 -90.51 -0.21 -1.96 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 15 C -0.12 -1.51 4.78 -26.68 -0.13 -1.64 16 16 C -0.13 -1.49 6.08 -26.61 -0.16 -1.66 16 17 C 0.06 0.70 6.32 -3.71 -0.02 0.68 16 18 N -0.58 -8.97 2.97 -174.07 -0.52 -9.49 16 19 C 0.60 9.92 7.68 -12.53 -0.10 9.83 16 20 O -0.54 -10.39 14.64 5.27 0.08 -10.31 16 21 C 0.16 2.22 7.58 -154.86 -1.17 1.05 16 22 N -0.44 -5.58 7.59 -11.44 -0.09 -5.67 16 23 C -0.02 -0.25 11.82 -18.08 -0.21 -0.46 16 24 C 0.00 -0.02 6.57 -82.06 -0.54 -0.56 16 25 N -0.41 -4.72 3.14 -110.07 -0.35 -5.06 16 26 C 0.10 0.97 6.17 -3.92 -0.02 0.95 16 27 C -0.14 -0.86 5.93 -26.51 -0.16 -1.02 16 28 C -0.13 -0.63 5.96 -26.41 -0.16 -0.79 16 29 C -0.05 -0.25 6.31 -27.61 -0.17 -0.43 16 30 C 0.12 1.95 5.20 -3.73 -0.02 1.93 16 31 H 0.04 0.63 6.46 -51.93 -0.34 0.30 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.81 6.31 -51.93 -0.33 0.48 16 34 H 0.36 8.90 4.03 -40.82 -0.16 8.74 16 35 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 36 H 0.07 0.83 6.50 -51.93 -0.34 0.49 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.16 1.95 3.69 -79.12 -0.29 1.66 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 1.27 7.17 -51.93 -0.37 0.90 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 47 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.09 1.84 5.63 -51.93 -0.29 1.55 16 52 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -35.08 390.04 -10.75 -45.83 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.37 Total: 8.36 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -3.19 Total: -0.31 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.43 Total: -68.10 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.71 Total: 18.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.08 -10.75 -45.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715345623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.381 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds