Wall clock time and date at job start Wed Apr 1 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47397 * 2 1 4 4 N 1.46497 * 109.47542 * 239.99533 * 2 1 3 5 5 C 1.36940 * 120.00074 * 84.99661 * 4 2 1 6 6 H 1.08001 * 119.99502 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99878 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99585 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00377 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47098 * 89.99774 * 9 7 5 11 11 H 1.48498 * 109.47318 * 210.00321 * 9 7 5 12 12 H 1.48507 * 109.46898 * 329.99960 * 9 7 5 13 13 C 1.53003 * 109.47113 * 119.99741 * 2 1 3 14 14 H 1.08996 * 109.52860 * 179.97438 * 13 2 1 15 15 C 1.53043 * 109.49441 * 300.00061 * 13 2 1 16 16 C 1.53050 * 109.52468 * 181.30961 * 15 13 2 17 17 C 1.53190 * 109.31319 * 298.63975 * 16 15 13 18 18 N 1.46933 * 108.77257 * 54.63557 * 17 16 15 19 19 C 1.34771 * 120.62772 * 126.37336 * 18 17 16 20 20 O 1.21604 * 120.00076 * 174.69049 * 19 18 17 21 21 C 1.47414 * 120.00230 * 354.68394 * 19 18 17 22 22 N 1.31874 * 125.93382 * 353.76936 * 21 19 18 23 23 C 1.33368 * 109.15494 * 179.79163 * 22 21 19 24 24 C 1.34877 * 108.15739 * 0.41206 * 23 22 21 25 25 N 1.35674 * 107.36880 * 359.80395 * 24 23 22 26 26 C 1.46443 * 124.57517 * 179.84398 * 25 24 23 27 27 C 1.53286 * 108.74998 * 342.78435 * 26 25 24 28 28 C 1.53148 * 109.60016 * 50.53789 * 27 26 25 29 29 C 1.50763 * 128.32571 * 179.84736 * 24 23 22 30 30 C 1.46924 * 118.73875 * 306.39110 * 18 17 16 31 31 H 1.08997 * 109.47466 * 300.00392 * 1 2 3 32 32 H 1.09002 * 109.46983 * 60.00248 * 1 2 3 33 33 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 34 34 H 0.97005 * 120.00130 * 265.00279 * 4 2 1 35 35 H 0.97006 * 119.99525 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46340 * 61.29880 * 15 13 2 37 37 H 1.09005 * 109.46020 * 301.31904 * 15 13 2 38 38 H 1.08999 * 109.49828 * 58.59368 * 16 15 13 39 39 H 1.09004 * 109.49432 * 178.69335 * 16 15 13 40 40 H 1.08990 * 109.58781 * 174.42379 * 17 16 15 41 41 H 1.09000 * 109.58432 * 294.85249 * 17 16 15 42 42 H 1.08000 * 125.92415 * 180.11962 * 23 22 21 43 43 H 1.08999 * 109.59119 * 102.55771 * 26 25 24 44 44 H 1.09004 * 109.59410 * 223.00552 * 26 25 24 45 45 H 1.08997 * 109.45474 * 170.58015 * 27 26 25 46 46 H 1.09005 * 109.44503 * 290.53374 * 27 26 25 47 47 H 1.09004 * 109.50433 * 50.45421 * 28 27 26 48 48 H 1.08998 * 109.50963 * 170.59609 * 28 27 26 49 49 H 1.09003 * 109.73017 * 44.59057 * 29 24 23 50 50 H 1.09001 * 109.76937 * 283.92990 * 29 24 23 51 51 H 1.08995 * 109.58519 * 173.39906 * 30 18 17 52 52 H 1.09004 * 109.58466 * 293.81960 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5091 8 7 2.7376 -0.0056 -4.6428 9 14 3.0545 -2.4750 -3.4254 10 1 1.8567 -3.2926 -3.7449 11 1 4.1298 -2.7676 -4.4069 12 1 3.5293 -2.8059 -2.0578 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7222 1.2500 15 6 1.5301 -0.0001 2.4992 16 6 2.0666 -0.7017 3.7491 17 6 1.5532 -2.1447 3.7799 18 7 1.9148 -2.8023 2.5167 19 6 2.5904 -3.9684 2.5184 20 8 2.7996 -4.5515 1.4720 21 6 3.0759 -4.5371 3.7889 22 7 3.0180 -3.9537 4.9701 23 6 3.5473 -4.7661 5.8859 24 6 3.9586 -5.8898 5.2634 25 7 3.6669 -5.7526 3.9455 26 6 3.9575 -6.7579 2.9210 27 6 4.9918 -7.7432 3.4770 28 6 4.5345 -8.2487 4.8484 29 6 4.6222 -7.1024 5.8651 30 6 1.5263 -2.1641 1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1524 35 1 3.0603 -0.4631 -5.4350 36 1 0.4403 -0.0203 2.5111 37 1 1.8741 1.0342 2.4875 38 1 3.1563 -0.7037 3.7258 39 1 1.7222 -0.1741 4.6386 40 1 2.0108 -2.6776 4.6133 41 1 0.4693 -2.1445 3.8945 42 1 3.6358 -4.5583 6.9420 43 1 3.0434 -7.2935 2.6649 44 1 4.3586 -6.2694 2.0330 45 1 5.0929 -8.5869 2.7944 46 1 5.9539 -7.2408 3.5782 47 1 3.5043 -8.5986 4.7823 48 1 5.1783 -9.0683 5.1675 49 1 4.1082 -7.3853 6.7838 50 1 5.6674 -6.8815 6.0813 51 1 1.9661 -2.7099 0.4169 52 1 0.4401 -2.1656 1.1601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715345623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:14 Heat of formation + Delta-G solvation = 22.030978 kcal Electronic energy + Delta-G solvation = -31851.175012 eV Core-core repulsion = 27851.002229 eV Total energy + Delta-G solvation = -4000.172783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.69604 -41.21047 -39.24994 -37.86166 -37.02520 -34.74269 -33.97305 -33.36930 -32.16261 -31.57713 -29.99993 -29.01389 -26.79582 -26.20148 -25.38863 -24.47255 -23.89740 -22.93482 -22.27431 -21.27383 -20.16854 -19.91790 -19.64141 -18.27885 -17.73061 -17.32293 -16.88507 -16.59075 -16.13097 -16.01512 -15.80826 -15.36811 -15.27728 -15.11604 -14.99423 -14.85279 -14.79531 -14.62307 -14.44848 -14.30923 -14.09093 -13.88413 -13.54718 -13.15123 -13.06081 -12.98089 -12.67577 -12.52306 -12.23291 -12.14591 -11.96986 -11.94310 -11.92476 -11.88093 -11.81331 -11.51177 -11.37991 -11.29583 -11.02458 -10.84280 -10.32631 -9.81757 -9.36171 -9.33889 -8.06861 -5.37560 0.20536 1.26857 1.30144 1.31883 1.38736 1.50539 2.07668 2.22076 2.41325 3.07032 3.25116 3.44593 3.49319 3.52226 3.69390 3.80077 3.81803 3.86875 3.94482 4.09774 4.18378 4.19016 4.30640 4.32721 4.39564 4.47911 4.57486 4.58369 4.59360 4.69291 4.78181 4.80210 4.83093 4.85975 4.94038 5.01448 5.05451 5.07442 5.08013 5.12958 5.20085 5.24118 5.29128 5.36517 5.44051 5.46364 5.63633 5.75632 5.78225 5.95694 6.18941 6.19695 6.64199 6.95251 7.04222 7.82398 7.99020 9.15106 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003265 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.568590 B = 8573.103491 C =10453.198817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.051 0.949 4 N -0.756 5.756 5 C -0.219 4.219 6 H 0.065 0.935 7 C -0.058 4.058 8 N -0.981 5.981 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.271 1.271 13 C -0.094 4.094 14 H 0.050 0.950 15 C -0.110 4.110 16 C -0.119 4.119 17 C 0.053 3.947 18 N -0.581 5.581 19 C 0.589 3.411 20 O -0.583 6.583 21 C 0.112 3.888 22 N -0.444 5.444 23 C -0.035 4.035 24 C 0.012 3.988 25 N -0.410 5.410 26 C 0.094 3.906 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.047 4.047 30 C 0.120 3.880 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.161 0.839 41 H 0.074 0.926 42 H 0.212 0.788 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.118 0.882 50 H 0.104 0.896 51 H 0.054 0.946 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 -16.460 31.703 35.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.070 3.930 3 H 0.069 0.931 4 N -0.400 5.400 5 C -0.350 4.350 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.632 5.632 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.197 1.197 13 C -0.114 4.114 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.157 4.157 17 C -0.068 4.068 18 N -0.311 5.311 19 C 0.376 3.624 20 O -0.464 6.464 21 C -0.144 4.144 22 N -0.166 5.166 23 C -0.187 4.187 24 C -0.108 4.108 25 N -0.091 5.091 26 C -0.027 4.027 27 C -0.167 4.167 28 C -0.162 4.162 29 C -0.085 4.085 30 C -0.002 4.002 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.193 0.807 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.123 0.877 40 H 0.176 0.824 41 H 0.092 0.908 42 H 0.229 0.771 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.125 0.875 49 H 0.136 0.864 50 H 0.122 0.878 51 H 0.072 0.928 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.348 -15.887 30.931 34.798 hybrid contribution 0.637 -1.358 -1.598 2.192 sum 1.985 -17.245 29.333 34.084 Atomic orbital electron populations 1.22384 0.96729 1.01350 1.01389 1.20435 0.93510 0.95052 0.84035 0.93085 1.43012 1.79966 1.09569 1.07469 1.19086 1.34277 0.94648 0.87025 0.91661 1.25293 1.02849 1.01309 0.95513 1.69848 1.55199 1.37191 1.01007 0.85629 0.77941 0.82304 0.77177 1.20531 1.21791 1.19712 1.21643 0.99536 0.93961 0.96254 0.93169 1.21651 1.01843 0.99288 0.91964 1.21800 1.00325 0.94839 0.98736 1.23337 1.01498 0.95091 0.86876 1.47894 1.53414 1.20581 1.09250 1.17015 0.78180 0.81482 0.85694 1.90792 1.60283 1.61772 1.33535 1.22040 1.10008 0.87612 0.94733 1.69663 1.19480 1.29533 0.97970 1.22786 1.04089 0.90850 1.00935 1.22143 1.04732 1.01423 0.82530 1.45164 1.40915 1.13707 1.09272 1.22320 1.01599 0.89018 0.89792 1.21983 0.97117 0.98452 0.99170 1.21717 1.02947 0.98500 0.92989 1.20567 1.01342 0.87666 0.98885 1.21699 1.00478 0.93128 0.84922 0.89790 0.94715 0.93139 0.80717 0.93371 0.89678 0.90546 0.93241 0.87719 0.82358 0.90778 0.77104 0.89393 0.90267 0.87469 0.90716 0.91553 0.87521 0.86368 0.87804 0.92767 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 8.79 71.98 0.63 -4.74 16 2 C 0.18 6.90 2.72 44.99 0.12 7.03 16 3 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 4 N -0.76 -37.74 4.85 -322.96 -1.57 -39.30 16 5 C -0.22 -13.03 10.41 84.03 0.87 -12.15 16 6 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 7 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 8 N -0.98 -65.22 13.97 21.65 0.30 -64.92 16 9 Si 0.94 50.13 27.74 68.60 1.90 52.04 16 10 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 12 H -0.27 -14.17 6.52 99.48 0.65 -13.52 16 13 C -0.09 -3.08 2.33 -10.72 -0.02 -3.10 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.11 -2.58 4.78 30.63 0.15 -2.43 16 16 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 17 C 0.05 1.24 6.32 86.36 0.55 1.78 16 18 N -0.58 -18.06 2.97 -822.88 -2.45 -20.51 16 19 C 0.59 20.34 7.68 86.66 0.67 21.01 16 20 O -0.58 -23.98 14.64 -4.04 -0.06 -24.04 16 21 C 0.11 3.18 7.58 136.40 1.03 4.22 16 22 N -0.44 -10.58 7.59 -190.12 -1.44 -12.02 16 23 C -0.03 -0.59 11.82 83.69 0.99 0.40 16 24 C 0.01 0.19 6.57 41.21 0.27 0.47 16 25 N -0.41 -9.34 3.14 -502.15 -1.58 -10.91 16 26 C 0.09 1.89 6.17 86.49 0.53 2.42 16 27 C -0.13 -1.41 5.93 30.74 0.18 -1.23 16 28 C -0.12 -0.80 5.96 30.80 0.18 -0.62 16 29 C -0.05 -0.31 6.31 30.03 0.19 -0.12 16 30 C 0.12 4.11 5.20 86.35 0.45 4.56 16 31 H 0.08 2.16 6.46 -2.39 -0.02 2.15 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.67 6.31 -2.39 -0.02 1.65 16 34 H 0.36 18.21 4.03 -92.70 -0.37 17.84 16 35 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 36 H 0.08 1.75 6.50 -2.39 -0.02 1.73 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.16 3.72 3.69 -56.07 -0.21 3.52 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 2.04 7.17 -2.38 -0.02 2.03 16 45 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 47 H 0.07 0.51 8.12 -2.38 -0.02 0.49 16 48 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.05 2.27 5.63 -2.39 -0.01 2.26 16 52 H 0.09 2.76 6.17 -2.39 -0.01 2.74 16 Total: -1.00 -81.28 390.04 2.87 -78.41 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.30 Total: 29.24 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 7.45 Total: 12.02 kcal Atomic # 7 Polarization: -140.94 SS G_CDS: -6.73 Total: -147.66 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.90 Total: 52.04 kcal Total: -81.28 2.87 -78.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715345623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.442 kcal (2) G-P(sol) polarization free energy of solvation -81.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds