Wall clock time and date at job start Wed Apr 1 2020 05:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47509 * 2 1 4 4 N 1.46498 * 109.47353 * 120.00408 * 2 1 3 5 5 C 1.36938 * 119.99929 * 274.99764 * 4 2 1 6 6 H 1.08004 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00067 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00195 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47417 * 89.99429 * 9 7 5 11 11 H 1.48501 * 109.47406 * 209.99953 * 9 7 5 12 12 H 1.48502 * 109.46848 * 329.99609 * 9 7 5 13 13 C 1.53008 * 109.47170 * 240.00489 * 2 1 3 14 14 H 1.09002 * 109.49538 * 185.06210 * 13 2 1 15 15 C 1.53043 * 109.49822 * 64.99693 * 13 2 1 16 16 C 1.53034 * 109.53624 * 178.68638 * 15 13 2 17 17 C 1.53191 * 109.31456 * 61.36598 * 16 15 13 18 18 N 1.46926 * 108.77525 * 305.36218 * 17 16 15 19 19 C 1.34774 * 120.63104 * 233.58956 * 18 17 16 20 20 O 1.21598 * 119.99895 * 183.79720 * 19 18 17 21 21 C 1.47540 * 119.99955 * 3.78787 * 19 18 17 22 22 C 1.40345 * 120.47850 * 309.54990 * 21 19 18 23 23 C 1.36859 * 118.48942 * 179.72167 * 22 21 19 24 24 C 1.39395 * 119.38184 * 0.50291 * 23 22 21 25 25 N 1.38456 * 119.54066 * 179.76580 * 24 23 22 26 26 C 1.46511 * 119.99825 * 4.72385 * 25 24 23 27 27 C 1.46497 * 120.00225 * 184.72684 * 25 24 23 28 28 N 1.32596 * 120.92017 * 359.48510 * 24 23 22 29 29 C 1.31682 * 121.63751 * 0.26047 * 28 24 23 30 30 C 1.46924 * 118.73658 * 53.86038 * 18 17 16 31 31 H 1.08995 * 109.46785 * 299.99351 * 1 2 3 32 32 H 1.08996 * 109.46899 * 59.99731 * 1 2 3 33 33 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00055 * 94.99965 * 4 2 1 35 35 H 0.97002 * 119.99659 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.45665 * 58.66431 * 15 13 2 37 37 H 1.08998 * 109.45833 * 298.70948 * 15 13 2 38 38 H 1.09003 * 109.49987 * 301.41222 * 16 15 13 39 39 H 1.09001 * 109.49839 * 181.31771 * 16 15 13 40 40 H 1.09000 * 109.58477 * 185.57859 * 17 16 15 41 41 H 1.08999 * 109.70506 * 65.21854 * 17 16 15 42 42 H 1.07995 * 120.75115 * 359.97438 * 22 21 19 43 43 H 1.08009 * 120.30560 * 180.26900 * 23 22 21 44 44 H 1.09001 * 109.46554 * 90.00089 * 26 25 24 45 45 H 1.08994 * 109.47263 * 330.00353 * 26 25 24 46 46 H 1.08997 * 109.46792 * 210.00414 * 26 25 24 47 47 H 1.09000 * 109.47524 * 179.97438 * 27 25 24 48 48 H 1.08999 * 109.47073 * 299.99776 * 27 25 24 49 49 H 1.09000 * 109.46855 * 60.00078 * 27 25 24 50 50 H 1.08005 * 119.73799 * 179.97438 * 29 28 24 51 51 H 1.09002 * 109.58551 * 65.92900 * 30 18 17 52 52 H 1.09004 * 109.59079 * 186.35298 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8928 1.0404 2.4241 7 6 2.6114 -0.6621 3.5091 8 7 2.7377 -0.0054 4.6428 9 14 3.0557 -2.4746 3.4252 10 1 4.4885 -2.6168 3.0618 11 1 2.8157 -3.1049 4.7482 12 1 2.2160 -3.1430 2.3989 13 6 2.0400 -0.7212 -1.2494 14 1 3.1263 -0.8006 -1.2056 15 6 1.6354 0.0688 -2.4961 16 6 2.1732 -0.6344 -3.7444 17 6 1.5611 -2.0355 -3.8400 18 7 1.8219 -2.7522 -2.5842 19 6 2.4123 -3.9637 -2.5948 20 8 2.5603 -4.5770 -1.5554 21 6 2.8790 -4.5457 -3.8677 22 6 2.0234 -4.6070 -4.9785 23 6 2.5003 -5.1499 -6.1407 24 6 3.8074 -5.6321 -6.1844 25 7 4.2917 -6.1865 -7.3571 26 6 3.4692 -6.1699 -8.5695 27 6 5.6264 -6.7898 -7.3856 28 7 4.5954 -5.5623 -5.1203 29 6 4.1777 -5.0430 -3.9845 30 6 1.4213 -2.1257 -1.3171 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.0611 -0.4628 5.4348 36 1 2.0505 1.0750 -2.4389 37 1 0.5484 0.1272 -2.5521 38 1 3.2582 -0.7152 -3.6775 39 1 1.9048 -0.0589 -4.6303 40 1 2.0147 -2.5765 -4.6705 41 1 0.4857 -1.9566 -3.9992 42 1 1.0130 -4.2304 -4.9187 43 1 1.8684 -5.2077 -7.0148 44 1 3.6699 -5.2582 -9.1321 45 1 2.4152 -6.2022 -8.2939 46 1 3.7108 -7.0370 -9.1842 47 1 5.8317 -7.1707 -8.3861 48 1 6.3706 -6.0380 -7.1229 49 1 5.6697 -7.6100 -6.6691 50 1 4.8455 -5.0019 -3.1366 51 1 0.3347 -2.0519 -1.2734 52 1 1.7826 -2.7262 -0.4822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715457892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:48 Heat of formation + Delta-G solvation = 11.630265 kcal Electronic energy + Delta-G solvation = -31106.710621 eV Core-core repulsion = 27106.086829 eV Total energy + Delta-G solvation = -4000.623792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.94747 -40.79415 -39.18078 -37.45149 -37.06289 -34.80400 -33.75911 -33.23675 -32.02767 -31.53757 -29.55369 -29.10751 -27.36409 -26.21330 -25.87165 -24.67447 -24.11893 -23.06658 -22.17817 -21.16030 -20.09261 -19.59434 -18.50222 -18.31281 -17.76528 -17.20041 -16.67532 -16.37848 -16.17635 -15.97951 -15.82048 -15.75107 -15.26941 -15.15902 -14.96684 -14.52904 -14.43926 -14.33254 -14.24569 -13.99733 -13.91143 -13.75484 -13.48185 -13.37821 -13.14861 -13.06357 -12.97252 -12.71485 -12.65154 -12.37095 -12.07124 -11.90821 -11.85470 -11.77584 -11.42555 -11.28050 -11.25035 -11.00974 -10.85028 -10.76202 -10.45308 -9.64069 -9.31874 -8.60975 -8.05157 -5.35289 -0.03307 0.29408 1.32036 1.35222 1.40888 1.59644 1.90878 2.02090 2.43170 2.80002 3.27185 3.37697 3.50947 3.56526 3.79090 3.86659 3.90354 3.94392 4.04130 4.11024 4.15567 4.28878 4.32376 4.37405 4.43708 4.53490 4.57501 4.61127 4.67921 4.71060 4.78673 4.80878 4.85138 4.88060 4.90370 4.93938 4.95332 5.07144 5.09544 5.12296 5.15509 5.23783 5.35806 5.38512 5.45906 5.54006 5.68030 5.77687 5.90269 6.20821 6.24880 6.37004 7.02692 7.06675 7.09547 7.85592 8.01412 9.16626 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.002625 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.393091 B =10665.999837 C =11829.305043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.050 0.950 4 N -0.757 5.757 5 C -0.217 4.217 6 H 0.066 0.934 7 C -0.058 4.058 8 N -0.981 5.981 9 Si 0.939 3.061 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.266 1.266 13 C -0.096 4.096 14 H 0.050 0.950 15 C -0.108 4.108 16 C -0.128 4.128 17 C 0.095 3.905 18 N -0.599 5.599 19 C 0.562 3.438 20 O -0.593 6.593 21 C -0.252 4.252 22 C 0.003 3.997 23 C -0.229 4.229 24 C 0.401 3.599 25 N -0.613 5.613 26 C 0.084 3.916 27 C 0.100 3.900 28 N -0.565 5.565 29 C 0.188 3.812 30 C 0.119 3.881 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.166 0.834 43 H 0.176 0.824 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.047 0.953 49 H 0.044 0.956 50 H 0.146 0.854 51 H 0.090 0.910 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -9.900 -38.153 39.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.068 0.932 4 N -0.400 5.400 5 C -0.348 4.348 6 H 0.084 0.916 7 C -0.250 4.250 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.192 1.192 13 C -0.116 4.116 14 H 0.068 0.932 15 C -0.145 4.145 16 C -0.166 4.166 17 C -0.026 4.026 18 N -0.330 5.330 19 C 0.351 3.649 20 O -0.474 6.474 21 C -0.261 4.261 22 C -0.023 4.023 23 C -0.253 4.253 24 C 0.164 3.836 25 N -0.324 5.324 26 C -0.058 4.058 27 C -0.043 4.043 28 N -0.283 5.283 29 C 0.029 3.971 30 C -0.004 4.004 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.184 0.816 43 H 0.193 0.807 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.163 0.837 51 H 0.108 0.892 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.356 -10.444 -37.784 39.272 hybrid contribution 0.104 -0.777 1.602 1.783 sum -2.252 -11.220 -36.183 37.949 Atomic orbital electron populations 1.22385 0.96811 1.01312 1.01325 1.20474 0.93484 0.95049 0.84234 0.93193 1.43006 1.80055 1.09432 1.07508 1.19074 1.34069 0.94522 0.87173 0.91647 1.25281 1.02979 1.01157 0.95581 1.69840 1.55204 1.37137 1.01016 0.85654 0.78327 0.82458 0.76730 1.21257 1.21854 1.19161 1.21745 0.99306 0.94481 0.96047 0.93186 1.21592 1.02506 0.98610 0.91833 1.21910 1.00131 0.95466 0.99109 1.22360 1.02555 0.92941 0.84759 1.48167 1.58780 1.17316 1.08765 1.18589 0.76649 0.81062 0.88562 1.90799 1.58583 1.62109 1.35936 1.20322 0.98339 1.12135 0.95305 1.21413 0.99591 0.91694 0.89571 1.21444 0.95299 1.07331 1.01264 1.18941 0.89448 0.88569 0.86647 1.46546 1.18254 1.59998 1.07599 1.22098 0.95791 1.03582 0.84308 1.21617 0.82273 0.97292 1.03077 1.67286 1.37465 1.23351 1.00201 1.22360 0.92659 0.88372 0.93678 1.21749 1.00121 0.93110 0.85420 0.95016 0.89644 0.93104 0.80779 0.93446 0.90902 0.89310 0.93130 0.87172 0.87917 0.88169 0.81634 0.80709 0.91520 0.89580 0.88932 0.88029 0.93401 0.93682 0.83663 0.89192 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 8.77 71.98 0.63 -4.48 16 2 C 0.18 6.54 2.67 44.99 0.12 6.66 16 3 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 4 N -0.76 -37.16 4.86 -322.93 -1.57 -38.73 16 5 C -0.22 -12.80 10.41 84.03 0.87 -11.93 16 6 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 7 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 8 N -0.98 -65.15 13.97 21.65 0.30 -64.85 16 9 Si 0.94 50.47 27.74 68.60 1.90 52.38 16 10 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 11 H -0.29 -15.60 7.11 99.48 0.71 -14.90 16 12 H -0.27 -13.80 6.52 99.48 0.65 -13.15 16 13 C -0.10 -2.87 2.28 -10.57 -0.02 -2.90 16 14 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.11 -2.10 4.89 30.62 0.15 -1.95 16 16 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 17 C 0.09 1.42 5.40 86.36 0.47 1.88 16 18 N -0.60 -15.41 2.97 -821.81 -2.44 -17.85 16 19 C 0.56 17.44 7.25 86.70 0.63 18.06 16 20 O -0.59 -24.90 16.48 -4.02 -0.07 -24.96 16 21 C -0.25 -6.06 5.01 -19.99 -0.10 -6.16 16 22 C 0.00 0.04 7.43 22.46 0.17 0.21 16 23 C -0.23 -2.89 9.20 22.22 0.20 -2.69 16 24 C 0.40 7.09 7.36 133.25 0.98 8.07 16 25 N -0.61 -7.45 3.38 -754.09 -2.55 -10.00 16 26 C 0.08 0.29 10.23 127.77 1.31 1.59 16 27 C 0.10 1.12 10.16 127.77 1.30 2.42 16 28 N -0.56 -13.46 9.54 -192.33 -1.84 -15.29 16 29 C 0.19 4.90 10.90 85.03 0.93 5.82 16 30 C 0.12 3.67 5.17 86.51 0.45 4.12 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.00 6.60 -2.39 -0.02 1.99 16 33 H 0.05 1.61 6.23 -2.39 -0.01 1.59 16 34 H 0.36 18.05 4.35 -92.71 -0.40 17.65 16 35 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.42 6.63 -2.39 -0.02 1.40 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 1.27 4.54 -2.39 -0.01 1.26 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.17 1.56 7.11 -2.91 -0.02 1.54 16 43 H 0.18 0.84 5.99 -2.91 -0.02 0.82 16 44 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.09 0.09 5.96 -2.39 -0.01 0.08 16 46 H 0.09 0.01 7.92 -2.39 -0.02 -0.01 16 47 H 0.10 0.47 7.79 -2.39 -0.02 0.45 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 51 H 0.09 2.49 6.08 -2.39 -0.01 2.47 16 52 H 0.05 1.97 5.86 -2.38 -0.01 1.96 16 Total: -1.00 -85.82 399.21 2.95 -82.87 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.47 Total: 22.60 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 8.73 Total: 13.84 kcal Atomic # 7 Polarization: -138.63 SS G_CDS: -8.09 Total: -146.72 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 1.90 Total: 52.38 kcal Total: -85.82 2.95 -82.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -85.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds