Wall clock time and date at job start Wed Apr 1 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47366 * 2 1 4 4 N 1.46509 * 109.46941 * 240.00182 * 2 1 3 5 5 C 1.36935 * 119.99930 * 84.99835 * 4 2 1 6 6 H 1.08002 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99686 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00372 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99556 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47488 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47185 * 119.99732 * 9 7 5 12 12 H 1.48504 * 109.46666 * 239.99378 * 9 7 5 13 13 C 1.52999 * 109.47391 * 120.00320 * 2 1 3 14 14 H 1.08998 * 109.52430 * 180.02562 * 13 2 1 15 15 C 1.53033 * 109.49562 * 300.16108 * 13 2 1 16 16 C 1.53041 * 109.53788 * 181.32036 * 15 13 2 17 17 C 1.53633 * 109.23716 * 298.50640 * 16 15 13 18 18 N 1.46917 * 108.54285 * 54.85977 * 17 16 15 19 19 C 1.34775 * 120.63008 * 126.36493 * 18 17 16 20 20 O 1.21595 * 119.99910 * 185.55809 * 19 18 17 21 21 C 1.47538 * 120.00278 * 5.56182 * 19 18 17 22 22 C 1.40345 * 120.47219 * 41.24689 * 21 19 18 23 23 C 1.36858 * 118.49014 * 179.70593 * 22 21 19 24 24 C 1.39400 * 119.38013 * 0.51427 * 23 22 21 25 25 N 1.38461 * 119.54044 * 179.74608 * 24 23 22 26 26 C 1.46505 * 119.99642 * 4.73083 * 25 24 23 27 27 C 1.46497 * 119.99962 * 184.72807 * 25 24 23 28 28 N 1.32598 * 120.91927 * 359.47454 * 24 23 22 29 29 C 1.31675 * 121.63812 * 0.26915 * 28 24 23 30 30 C 1.46932 * 118.73877 * 306.09353 * 18 17 16 31 31 H 1.08999 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46770 * 299.99827 * 1 2 3 33 33 H 1.08999 * 109.47255 * 59.99934 * 1 2 3 34 34 H 0.96999 * 119.99791 * 265.00535 * 4 2 1 35 35 H 0.97001 * 120.00008 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46064 * 301.33335 * 15 13 2 37 37 H 1.08997 * 109.46854 * 61.30886 * 15 13 2 38 38 H 1.08995 * 109.50135 * 58.58476 * 16 15 13 39 39 H 1.09002 * 109.50195 * 178.68684 * 16 15 13 40 40 H 1.09001 * 109.73822 * 295.11590 * 17 16 15 41 41 H 1.09008 * 109.65995 * 174.55071 * 17 16 15 42 42 H 1.08001 * 120.75633 * 0.02562 * 22 21 19 43 43 H 1.08007 * 120.31073 * 180.28633 * 23 22 21 44 44 H 1.08999 * 109.46705 * 269.99320 * 26 25 24 45 45 H 1.09004 * 109.46389 * 150.00156 * 26 25 24 46 46 H 1.09001 * 109.47401 * 30.00138 * 26 25 24 47 47 H 1.08994 * 109.47199 * 180.02562 * 27 25 24 48 48 H 1.09003 * 109.47029 * 300.00252 * 27 25 24 49 49 H 1.09002 * 109.46802 * 60.00139 * 27 25 24 50 50 H 1.08001 * 119.74435 * 179.97438 * 29 28 24 51 51 H 1.09000 * 109.58888 * 173.64875 * 30 18 17 52 52 H 1.09002 * 109.58333 * 294.07432 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1490 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6112 -0.6620 -3.5094 8 7 2.9242 -1.9390 -3.4503 9 14 2.7902 0.2702 -5.1182 10 1 2.3763 1.6825 -4.9208 11 1 4.2071 0.2264 -5.5607 12 1 1.9291 -0.3577 -6.1524 13 6 2.0401 -0.7213 1.2492 14 1 3.1301 -0.7214 1.2502 15 6 1.5270 -0.0028 2.4991 16 6 2.0636 -0.7040 3.7491 17 6 1.5486 -2.1511 3.7781 18 7 1.9181 -2.8040 2.5149 19 6 2.5957 -3.9690 2.5166 20 8 2.9840 -4.4481 1.4686 21 6 2.8664 -4.6632 3.7901 22 6 1.8787 -4.7367 4.7845 23 6 2.1713 -5.3957 5.9477 24 6 3.4347 -5.9608 6.1144 25 7 3.7360 -6.6238 7.2921 26 6 2.6995 -6.8180 8.3091 27 6 5.0911 -7.1310 7.5210 28 7 4.3501 -5.8769 5.1588 29 6 4.1079 -5.2565 4.0229 30 6 1.5298 -2.1657 1.2497 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 2.2489 -1.6318 -1.1527 35 1 3.2476 -2.3962 -4.2424 36 1 1.8684 1.0324 2.4888 37 1 0.4373 -0.0256 2.5097 38 1 3.1533 -0.7034 3.7272 39 1 1.7168 -0.1779 4.6386 40 1 0.4640 -2.1538 3.8873 41 1 2.0032 -2.6856 4.6124 42 1 0.9081 -4.2879 4.6331 43 1 1.4315 -5.4741 6.7307 44 1 2.7032 -5.9729 8.9975 45 1 2.8994 -7.7367 8.8606 46 1 1.7250 -6.8889 7.8259 47 1 5.1365 -7.6199 8.4941 48 1 5.3468 -7.8490 6.7417 49 1 5.7983 -6.3018 7.4972 50 1 4.8761 -5.2063 3.2654 51 1 1.9719 -2.7098 0.4151 52 1 0.4437 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715457894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:54 Heat of formation + Delta-G solvation = 32.574786 kcal Electronic energy + Delta-G solvation = -30955.792228 eV Core-core repulsion = 26956.076659 eV Total energy + Delta-G solvation = -3999.715569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.95097 -39.70007 -37.79730 -36.68632 -35.41671 -33.29875 -32.51317 -31.78826 -30.90519 -29.61475 -28.65288 -27.82226 -26.40828 -25.04313 -24.42611 -23.50616 -22.98589 -22.21719 -21.08166 -19.76957 -18.59899 -17.74417 -17.46598 -16.98639 -16.76147 -15.88783 -15.66713 -15.02771 -14.94570 -14.83994 -14.72133 -14.41413 -14.17471 -13.73049 -13.61640 -13.57548 -13.45661 -13.05041 -12.99161 -12.87011 -12.69112 -12.68080 -12.53057 -12.33736 -12.23403 -11.84033 -11.49521 -11.15491 -10.94784 -10.81914 -10.55857 -10.39658 -10.25161 -10.18763 -10.15285 -9.98495 -9.92671 -9.77643 -9.49612 -9.37490 -8.83396 -8.37050 -7.88850 -6.86698 -5.65775 -2.95397 0.85316 1.10955 2.51922 2.91084 3.16200 3.49250 3.54094 3.56968 3.73376 4.20801 4.45635 4.57912 4.64770 4.66400 4.75710 4.85075 4.86406 4.93373 4.94068 4.98876 5.08776 5.17661 5.27797 5.28654 5.38458 5.48700 5.49909 5.52677 5.65251 5.67159 5.73134 5.82477 5.88355 5.91283 5.93284 6.02379 6.12882 6.18895 6.22336 6.31018 6.42396 6.48218 6.49942 6.64975 6.72216 6.84504 6.95544 6.95754 7.18684 7.58610 7.78918 7.86267 8.38897 8.51793 9.62666 10.21274 10.55259 11.56327 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002330 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.171915 B =12014.739086 C =13042.646982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.101 3.899 18 N -0.606 5.606 19 C 0.564 3.436 20 O -0.525 6.525 21 C -0.238 4.238 22 C -0.004 4.004 23 C -0.245 4.245 24 C 0.413 3.587 25 N -0.614 5.614 26 C 0.093 3.907 27 C 0.103 3.897 28 N -0.543 5.543 29 C 0.206 3.794 30 C 0.117 3.883 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.166 0.834 51 H 0.102 0.898 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -6.544 29.400 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.022 4.022 18 N -0.339 5.339 19 C 0.351 3.649 20 O -0.402 6.402 21 C -0.247 4.247 22 C -0.030 4.030 23 C -0.270 4.270 24 C 0.178 3.822 25 N -0.327 5.327 26 C -0.050 4.050 27 C -0.040 4.040 28 N -0.260 5.260 29 C 0.047 3.953 30 C -0.004 4.004 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.183 0.817 51 H 0.120 0.880 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.082 -7.177 29.012 29.959 hybrid contribution -0.703 0.579 -1.003 1.354 sum -2.785 -6.598 28.010 28.911 Atomic orbital electron populations 1.22572 0.99583 1.00823 0.99907 1.20172 0.91784 0.95273 0.85833 0.93381 1.42529 1.78103 1.10848 1.05279 1.19256 1.36543 0.93821 0.87356 0.91235 1.24753 1.02309 0.95954 0.97998 1.69685 1.50717 1.08564 1.28675 0.86166 0.77260 0.78730 0.84315 1.20663 1.21965 1.21989 1.21764 1.01005 0.94305 0.95231 0.90838 1.21622 1.00806 0.99182 0.93602 1.21998 1.01453 0.95039 0.98704 1.22071 0.99784 0.93844 0.86490 1.48056 1.56181 1.21966 1.07704 1.18038 0.77892 0.80635 0.88290 1.90872 1.50691 1.65833 1.32775 1.20632 0.97832 1.09079 0.97119 1.21262 0.98484 0.92412 0.90818 1.21083 0.97523 1.07350 1.01008 1.18501 0.89299 0.88222 0.86168 1.46174 1.11524 1.59415 1.15546 1.21780 0.91106 1.01526 0.90577 1.21555 0.82121 0.99316 1.00987 1.67334 1.33880 1.22619 1.02147 1.22608 0.94268 0.86699 0.91752 1.21832 0.99674 0.93370 0.85558 0.93324 0.94290 0.92934 0.77992 0.93565 0.91706 0.91456 0.91560 0.91139 0.91481 0.89664 0.84324 0.84639 0.92707 0.90858 0.90927 0.91232 0.92099 0.92315 0.81724 0.87978 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.79 37.16 0.33 -2.64 16 2 C 0.18 3.55 2.72 -67.93 -0.19 3.36 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.49 5.04 -53.42 -0.27 -18.76 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 C -0.10 -1.71 2.33 -90.50 -0.21 -1.92 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.11 -1.41 4.77 -26.69 -0.13 -1.54 16 16 C -0.13 -1.39 6.10 -26.38 -0.16 -1.55 16 17 C 0.10 1.05 4.98 -3.49 -0.02 1.03 16 18 N -0.61 -8.82 2.97 -173.72 -0.52 -9.33 16 19 C 0.56 9.25 7.32 -12.47 -0.09 9.15 16 20 O -0.53 -11.13 16.37 5.28 0.09 -11.04 16 21 C -0.24 -3.13 5.10 -104.82 -0.53 -3.66 16 22 C 0.00 -0.04 7.45 -39.29 -0.29 -0.33 16 23 C -0.25 -2.18 9.12 -39.65 -0.36 -2.54 16 24 C 0.41 4.33 7.36 -155.28 -1.14 3.19 16 25 N -0.61 -4.86 3.38 -189.70 -0.64 -5.50 16 26 C 0.09 0.40 10.01 59.85 0.60 1.00 16 27 C 0.10 0.70 10.16 59.85 0.61 1.30 16 28 N -0.54 -6.79 9.54 -12.14 -0.12 -6.90 16 29 C 0.21 2.72 10.82 -17.13 -0.19 2.54 16 30 C 0.12 2.00 5.22 -3.71 -0.02 1.98 16 31 H 0.05 0.86 6.32 -51.93 -0.33 0.53 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.39 10.63 6.16 -40.82 -0.25 10.38 16 35 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.78 6.50 -51.93 -0.34 0.44 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.79 4.78 -51.92 -0.25 0.54 16 42 H 0.14 1.12 6.75 -52.49 -0.35 0.76 16 43 H 0.14 0.81 6.22 -52.48 -0.33 0.49 16 44 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 46 H 0.07 0.28 6.35 -51.93 -0.33 -0.05 16 47 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 51 H 0.10 2.19 5.58 -51.93 -0.29 1.90 16 52 H 0.07 1.13 6.18 -51.93 -0.32 0.81 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -35.52 401.47 -9.87 -45.40 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.13 Total: 8.57 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.04 Total: 1.97 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -0.82 Total: -68.92 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.52 -9.87 -45.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715457894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.973 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds