Wall clock time and date at job start Wed Apr 1 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47216 * 120.00100 * 2 1 3 5 5 O 1.21284 * 120.00025 * 24.93793 * 4 2 1 6 6 N 1.34779 * 120.00411 * 204.93551 * 4 2 1 7 7 C 1.46929 * 120.62649 * 5.12762 * 6 4 2 8 8 C 1.52763 * 109.00863 * 233.58367 * 7 6 4 9 9 C 1.53044 * 109.38129 * 305.59046 * 8 7 6 10 10 N 1.46497 * 109.44806 * 181.25503 * 9 8 7 11 11 C 1.36943 * 119.99970 * 299.93872 * 10 9 8 12 12 H 1.07997 * 119.99699 * 16.82013 * 11 10 9 13 13 C 1.38810 * 119.99887 * 196.82402 * 11 10 9 14 14 N 1.31621 * 120.00233 * 18.57242 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 198.56702 * 13 11 10 16 16 H 1.48499 * 109.47003 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46701 * 120.00182 * 15 13 11 18 18 H 1.48497 * 109.47489 * 240.00131 * 15 13 11 19 19 C 1.46502 * 120.00165 * 119.93639 * 10 9 8 20 20 C 1.52998 * 109.47124 * 83.80269 * 19 10 9 21 21 C 1.53005 * 117.49771 * 243.62256 * 20 19 10 22 22 C 1.52996 * 59.99960 * 252.50613 * 21 20 19 23 23 C 1.53034 * 109.53948 * 61.23703 * 9 8 7 24 24 C 1.46928 * 120.63483 * 185.40726 * 6 4 2 25 25 N 1.46505 * 109.47430 * 240.00109 * 2 1 3 26 26 C 1.34946 * 126.03681 * 324.97696 * 25 2 1 27 27 C 1.35314 * 107.74502 * 179.75224 * 26 25 2 28 28 C 1.39873 * 107.92006 * 0.38921 * 27 26 25 29 29 N 1.30833 * 108.20150 * 359.60375 * 28 27 26 30 30 H 1.09000 * 109.47345 * 298.64880 * 1 2 3 31 31 H 1.09006 * 109.46781 * 58.65315 * 1 2 3 32 32 H 1.09002 * 109.47032 * 178.64253 * 1 2 3 33 33 H 1.08995 * 109.59105 * 353.41968 * 7 6 4 34 34 H 1.09002 * 109.58590 * 113.84446 * 7 6 4 35 35 H 1.09001 * 109.56305 * 185.55634 * 8 7 6 36 36 H 1.08993 * 109.35834 * 65.49728 * 8 7 6 37 37 H 1.09002 * 109.45789 * 301.21395 * 9 8 7 38 38 H 0.97002 * 120.00153 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47140 * 203.80153 * 19 10 9 40 40 H 1.08997 * 109.47259 * 323.80133 * 19 10 9 41 41 H 1.09004 * 115.55072 * 29.32264 * 20 19 10 42 42 H 1.08996 * 117.49593 * 0.02562 * 21 20 19 43 43 H 1.09006 * 117.49574 * 145.01578 * 21 20 19 44 44 H 1.09005 * 117.50342 * 252.50931 * 22 21 20 45 45 H 1.09003 * 117.49707 * 107.48714 * 22 21 20 46 46 H 1.09004 * 109.49719 * 178.68071 * 23 9 8 47 47 H 1.09008 * 109.49695 * 58.58969 * 23 9 8 48 48 H 1.09000 * 109.58475 * 246.15751 * 24 6 4 49 49 H 1.08996 * 109.58118 * 6.43812 * 24 6 4 50 50 H 1.08001 * 126.12363 * 359.97438 * 26 25 2 51 51 H 1.08002 * 126.03975 * 180.28199 * 27 26 25 52 52 H 1.08000 * 125.89562 * 179.86886 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3365 -1.5386 1.7791 6 7 3.2548 -0.4256 1.7212 7 6 4.0637 0.6526 1.1363 8 6 5.4365 0.0973 0.7613 9 6 6.0672 -0.5682 1.9867 10 7 7.3964 -1.0749 1.6365 11 6 7.5335 -2.0102 0.6457 12 1 6.7285 -2.1767 -0.0548 13 6 8.7071 -2.7442 0.5417 14 7 9.5270 -2.8232 1.5682 15 14 9.1226 -3.6199 -1.0552 16 1 8.0460 -3.3755 -2.0484 17 1 10.4099 -3.1013 -1.5835 18 1 9.2425 -5.0784 -0.8033 19 6 8.5790 -0.5811 2.3463 20 6 8.7560 -1.3641 3.6488 21 6 8.6395 -0.5870 4.9617 22 6 10.0070 -1.0768 4.4814 23 6 5.1845 -1.7295 2.4496 24 6 3.8065 -1.1913 2.8473 25 7 2.0184 -0.6906 -1.1962 26 6 1.4405 -1.7561 -1.7893 27 6 2.1937 -2.0893 -2.8629 28 6 3.2736 -1.2023 -2.9230 29 7 3.1677 -0.3614 -1.9264 30 1 -0.3634 0.4927 0.9018 31 1 -0.3633 0.5346 -0.8777 32 1 -0.3633 -1.0274 -0.0243 33 1 3.5701 1.0366 0.2436 34 1 4.1836 1.4553 1.8639 35 1 6.0774 0.9094 0.4181 36 1 5.3234 -0.6388 -0.0346 37 1 6.1573 0.1623 2.7906 38 1 10.3470 -3.3365 1.4957 39 1 9.4608 -0.7142 1.7196 40 1 8.4509 0.4773 2.5732 41 1 8.3846 -2.3888 3.6355 42 1 8.4363 0.4819 4.8974 43 1 8.1912 -1.1005 5.8123 44 1 10.4586 -1.9125 5.0161 45 1 10.7040 -0.3300 4.1012 46 1 5.6460 -2.2176 3.3079 47 1 5.0738 -2.4484 1.6377 48 1 3.9050 -0.5420 3.7173 49 1 3.1419 -2.0219 3.0847 50 1 0.5367 -2.2517 -1.4670 51 1 1.9969 -2.8983 -3.5508 52 1 4.0569 -1.2078 -3.6665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716714307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:28 Heat of formation + Delta-G solvation = 109.414401 kcal Electronic energy + Delta-G solvation = -32502.020445 eV Core-core repulsion = 28505.636892 eV Total energy + Delta-G solvation = -3996.383553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.36674 -39.92316 -37.80947 -36.46631 -34.65049 -34.48403 -32.08528 -30.83072 -30.01437 -29.77639 -29.48151 -26.22275 -25.54085 -24.31936 -22.74298 -22.24345 -21.47415 -21.17372 -20.89681 -19.77705 -19.33557 -18.80192 -17.68075 -17.15803 -16.29165 -15.95751 -15.28850 -15.00147 -14.60439 -14.40500 -14.35649 -13.88064 -13.68347 -13.60714 -13.57479 -13.43086 -13.03649 -12.96583 -12.84023 -12.59539 -12.45756 -12.21200 -11.94786 -11.61164 -11.56912 -11.24311 -10.89241 -10.77575 -10.74252 -10.65914 -10.61415 -10.59425 -10.28309 -10.16477 -9.91486 -9.86968 -9.65135 -9.27743 -9.14222 -8.76316 -8.54489 -8.47997 -8.30838 -6.78289 -5.70516 -3.09459 1.77500 2.04950 2.93540 2.98110 3.04085 3.39863 3.49035 3.50429 4.25176 4.28532 4.51365 4.61584 4.84439 4.94214 5.01869 5.16704 5.20506 5.25651 5.33268 5.39557 5.48381 5.52160 5.57806 5.69043 5.70264 5.77407 5.81496 5.84556 5.97550 6.00537 6.05162 6.06403 6.11006 6.25668 6.34604 6.40028 6.46189 6.59030 6.63236 6.68147 6.71932 6.80677 6.91985 6.94914 7.05617 7.11126 7.32093 7.44334 7.55924 7.73554 7.78004 7.87827 8.07762 8.41369 9.27247 9.90332 10.36620 11.33430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.004030 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.566461 B = 6945.800459 C = 8703.354821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.119 0.881 4 C 0.504 3.496 5 O -0.539 6.539 6 N -0.590 5.590 7 C 0.104 3.896 8 C -0.135 4.135 9 C 0.182 3.818 10 N -0.588 5.588 11 C -0.243 4.243 12 H 0.069 0.931 13 C 0.000 4.000 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.294 1.294 19 C 0.206 3.794 20 C -0.078 4.078 21 C -0.226 4.226 22 C -0.183 4.183 23 C -0.135 4.135 24 C 0.111 3.889 25 N -0.366 5.366 26 C 0.061 3.939 27 C -0.272 4.272 28 C 0.052 3.948 29 N -0.283 5.283 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.006 0.994 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.170 0.830 51 H 0.146 0.854 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 7.734 -2.292 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.137 0.863 4 C 0.288 3.712 5 O -0.416 6.416 6 N -0.322 5.322 7 C -0.018 4.018 8 C -0.175 4.175 9 C 0.073 3.927 10 N -0.307 5.307 11 C -0.372 4.372 12 H 0.087 0.913 13 C -0.197 4.197 14 N -0.541 5.541 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.221 1.221 19 C 0.081 3.919 20 C -0.098 4.098 21 C -0.263 4.263 22 C -0.221 4.221 23 C -0.175 4.175 24 C -0.011 4.011 25 N -0.150 5.150 26 C -0.084 4.084 27 C -0.302 4.302 28 C -0.135 4.135 29 N -0.103 5.103 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.024 0.976 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.187 0.813 51 H 0.164 0.836 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.035 8.291 -1.277 16.351 hybrid contribution 0.226 -1.457 -1.085 1.831 sum -13.809 6.834 -2.362 15.587 Atomic orbital electron populations 1.21992 0.90588 1.04547 1.03670 1.21316 0.96420 0.97793 0.80743 0.86284 1.20605 0.81890 0.83409 0.85266 1.90685 1.55997 1.34200 1.60707 1.48189 1.15474 1.34826 1.33690 1.21893 0.93363 0.88647 0.97942 1.22229 0.93118 1.01158 1.01043 1.20206 0.85920 0.93144 0.93407 1.44132 0.99427 1.46556 1.40571 1.19119 1.00886 1.13016 1.04202 0.91313 1.24794 0.99134 0.98663 0.97148 1.70168 1.13296 1.43525 1.27093 0.86348 0.78031 0.78944 0.84250 1.20529 1.21810 1.22135 1.20285 0.90909 0.89916 0.90805 1.23008 0.96856 1.00128 0.89854 1.23106 1.02225 0.99534 1.01431 1.22589 0.91106 1.02287 1.06101 1.22361 0.92759 1.00288 1.02131 1.21788 0.96216 0.95766 0.87328 1.48466 1.20171 1.24732 1.21631 1.22468 1.00065 0.91017 0.94867 1.21492 0.99208 1.06366 1.03109 1.23924 0.98783 0.93789 0.97005 1.77420 1.01523 1.24188 1.07195 0.89702 0.90815 0.90413 0.89925 0.91706 0.91259 0.90825 0.93071 0.93975 0.89815 0.97551 0.87373 0.90659 0.90965 0.90729 0.90542 0.90996 0.91516 0.91789 0.89875 0.81272 0.83598 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.37 37.15 0.31 -1.01 16 2 C 0.14 1.66 2.87 -69.08 -0.20 1.47 16 3 H 0.12 1.21 6.25 -51.93 -0.32 0.89 16 4 C 0.50 7.43 7.13 -10.99 -0.08 7.35 16 5 O -0.54 -9.31 15.56 5.55 0.09 -9.22 16 6 N -0.59 -8.78 2.98 -173.03 -0.52 -9.30 16 7 C 0.10 1.43 6.24 -3.93 -0.02 1.41 16 8 C -0.14 -2.32 5.29 -26.83 -0.14 -2.46 16 9 C 0.18 3.43 2.59 -67.89 -0.18 3.26 16 10 N -0.59 -13.38 2.47 -165.62 -0.41 -13.79 16 11 C -0.24 -6.21 8.44 -15.06 -0.13 -6.33 16 12 H 0.07 1.82 6.90 -52.49 -0.36 1.46 16 13 C 0.00 0.01 4.95 -17.43 -0.09 -0.08 16 14 N -0.90 -24.07 8.95 55.49 0.50 -23.58 16 15 Si 0.89 21.44 29.59 -169.99 -5.03 16.41 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 C 0.21 4.66 5.08 -4.04 -0.02 4.64 16 20 C -0.08 -1.68 4.44 -90.62 -0.40 -2.08 16 21 C -0.23 -4.11 10.18 -26.73 -0.27 -4.38 16 22 C -0.18 -3.54 10.25 -26.73 -0.27 -3.81 16 23 C -0.14 -2.52 5.30 -26.62 -0.14 -2.66 16 24 C 0.11 1.75 6.42 -3.71 -0.02 1.73 16 25 N -0.37 -4.83 3.51 -55.99 -0.20 -5.02 16 26 C 0.06 0.74 10.59 -17.22 -0.18 0.56 16 27 C -0.27 -3.31 10.80 -40.01 -0.43 -3.74 16 28 C 0.05 0.69 12.03 -17.37 -0.21 0.49 16 29 N -0.28 -4.17 12.02 30.62 0.37 -3.80 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.73 6.86 -51.93 -0.36 0.37 16 33 H 0.08 1.05 4.92 -51.93 -0.26 0.80 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.48 7.07 -51.93 -0.37 1.11 16 37 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 38 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.08 2.14 6.26 -51.93 -0.33 1.82 16 40 H 0.01 0.13 7.79 -51.93 -0.40 -0.27 16 41 H 0.11 2.72 7.53 -51.93 -0.39 2.33 16 42 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.07 1.44 7.69 -51.92 -0.40 1.04 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 50 H 0.17 1.64 7.23 -52.49 -0.38 1.26 16 51 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 52 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -29.59 406.53 -10.09 -39.68 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.54 Total: 8.17 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.48 Total: -5.67 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.26 Total: -55.49 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.59 -10.09 -39.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.096 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds