Wall clock time and date at job start Wed Apr 1 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47247 * 2 1 4 4 C 1.50697 * 109.47216 * 120.00100 * 2 1 3 5 5 O 1.21284 * 120.00025 * 24.93793 * 4 2 1 6 6 N 1.34779 * 120.00411 * 204.93551 * 4 2 1 7 7 C 1.46929 * 120.62649 * 5.12762 * 6 4 2 8 8 C 1.52763 * 109.00863 * 233.58367 * 7 6 4 9 9 C 1.53044 * 109.38129 * 305.59046 * 8 7 6 10 10 N 1.46497 * 109.44806 * 181.25503 * 9 8 7 11 11 C 1.36943 * 119.99970 * 299.93872 * 10 9 8 12 12 H 1.07997 * 119.99699 * 16.82013 * 11 10 9 13 13 C 1.38810 * 119.99887 * 196.82402 * 11 10 9 14 14 N 1.31621 * 120.00233 * 18.57242 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 198.56702 * 13 11 10 16 16 H 1.48499 * 109.47003 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46701 * 120.00182 * 15 13 11 18 18 H 1.48497 * 109.47489 * 240.00131 * 15 13 11 19 19 C 1.46502 * 120.00165 * 119.93639 * 10 9 8 20 20 C 1.52998 * 109.47124 * 83.80269 * 19 10 9 21 21 C 1.53005 * 117.49771 * 243.62256 * 20 19 10 22 22 C 1.52996 * 59.99960 * 252.50613 * 21 20 19 23 23 C 1.53034 * 109.53948 * 61.23703 * 9 8 7 24 24 C 1.46928 * 120.63483 * 185.40726 * 6 4 2 25 25 N 1.46505 * 109.47430 * 240.00109 * 2 1 3 26 26 C 1.34946 * 126.03681 * 324.97696 * 25 2 1 27 27 C 1.35314 * 107.74502 * 179.75224 * 26 25 2 28 28 C 1.39873 * 107.92006 * 0.38921 * 27 26 25 29 29 N 1.30833 * 108.20150 * 359.60375 * 28 27 26 30 30 H 1.09000 * 109.47345 * 298.64880 * 1 2 3 31 31 H 1.09006 * 109.46781 * 58.65315 * 1 2 3 32 32 H 1.09002 * 109.47032 * 178.64253 * 1 2 3 33 33 H 1.08995 * 109.59105 * 353.41968 * 7 6 4 34 34 H 1.09002 * 109.58590 * 113.84446 * 7 6 4 35 35 H 1.09001 * 109.56305 * 185.55634 * 8 7 6 36 36 H 1.08993 * 109.35834 * 65.49728 * 8 7 6 37 37 H 1.09002 * 109.45789 * 301.21395 * 9 8 7 38 38 H 0.97002 * 120.00153 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47140 * 203.80153 * 19 10 9 40 40 H 1.08997 * 109.47259 * 323.80133 * 19 10 9 41 41 H 1.09004 * 115.55072 * 29.32264 * 20 19 10 42 42 H 1.08996 * 117.49593 * 0.02562 * 21 20 19 43 43 H 1.09006 * 117.49574 * 145.01578 * 21 20 19 44 44 H 1.09005 * 117.50342 * 252.50931 * 22 21 20 45 45 H 1.09003 * 117.49707 * 107.48714 * 22 21 20 46 46 H 1.09004 * 109.49719 * 178.68071 * 23 9 8 47 47 H 1.09008 * 109.49695 * 58.58969 * 23 9 8 48 48 H 1.09000 * 109.58475 * 246.15751 * 24 6 4 49 49 H 1.08996 * 109.58118 * 6.43812 * 24 6 4 50 50 H 1.08001 * 126.12363 * 359.97438 * 26 25 2 51 51 H 1.08002 * 126.03975 * 180.28199 * 27 26 25 52 52 H 1.08000 * 125.89562 * 179.86886 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3365 -1.5386 1.7791 6 7 3.2548 -0.4256 1.7212 7 6 4.0637 0.6526 1.1363 8 6 5.4365 0.0973 0.7613 9 6 6.0672 -0.5682 1.9867 10 7 7.3964 -1.0749 1.6365 11 6 7.5335 -2.0102 0.6457 12 1 6.7285 -2.1767 -0.0548 13 6 8.7071 -2.7442 0.5417 14 7 9.5270 -2.8232 1.5682 15 14 9.1226 -3.6199 -1.0552 16 1 8.0460 -3.3755 -2.0484 17 1 10.4099 -3.1013 -1.5835 18 1 9.2425 -5.0784 -0.8033 19 6 8.5790 -0.5811 2.3463 20 6 8.7560 -1.3641 3.6488 21 6 8.6395 -0.5870 4.9617 22 6 10.0070 -1.0768 4.4814 23 6 5.1845 -1.7295 2.4496 24 6 3.8065 -1.1913 2.8473 25 7 2.0184 -0.6906 -1.1962 26 6 1.4405 -1.7561 -1.7893 27 6 2.1937 -2.0893 -2.8629 28 6 3.2736 -1.2023 -2.9230 29 7 3.1677 -0.3614 -1.9264 30 1 -0.3634 0.4927 0.9018 31 1 -0.3633 0.5346 -0.8777 32 1 -0.3633 -1.0274 -0.0243 33 1 3.5701 1.0366 0.2436 34 1 4.1836 1.4553 1.8639 35 1 6.0774 0.9094 0.4181 36 1 5.3234 -0.6388 -0.0346 37 1 6.1573 0.1623 2.7906 38 1 10.3470 -3.3365 1.4957 39 1 9.4608 -0.7142 1.7196 40 1 8.4509 0.4773 2.5732 41 1 8.3846 -2.3888 3.6355 42 1 8.4363 0.4819 4.8974 43 1 8.1912 -1.1005 5.8123 44 1 10.4586 -1.9125 5.0161 45 1 10.7040 -0.3300 4.1012 46 1 5.6460 -2.2176 3.3079 47 1 5.0738 -2.4484 1.6377 48 1 3.9050 -0.5420 3.7173 49 1 3.1419 -2.0219 3.0847 50 1 0.5367 -2.2517 -1.4670 51 1 1.9969 -2.8983 -3.5508 52 1 4.0569 -1.2078 -3.6665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716714307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:20 Heat of formation + Delta-G solvation = 94.529686 kcal Electronic energy + Delta-G solvation = -32502.665895 eV Core-core repulsion = 28505.636892 eV Total energy + Delta-G solvation = -3997.029003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -42.36404 -41.10024 -39.31045 -37.97515 -36.15354 -35.56227 -33.79876 -32.15550 -31.48383 -30.97723 -30.36259 -27.97622 -26.90024 -25.57618 -24.06912 -23.71685 -22.98759 -22.33802 -21.92448 -21.24779 -20.95463 -19.99252 -18.90072 -18.16962 -18.02986 -17.21903 -16.94189 -16.17965 -16.14320 -15.61264 -15.55530 -15.45793 -15.22237 -15.11609 -14.83436 -14.57139 -14.36032 -14.20744 -13.85665 -13.59757 -13.54825 -13.32441 -13.23458 -13.18073 -13.03314 -12.70200 -12.57461 -12.44343 -12.32324 -12.23457 -12.13249 -12.02618 -11.81368 -11.64959 -11.54347 -11.32933 -11.17310 -10.83712 -10.53248 -10.30704 -10.11736 -9.72999 -9.52259 -8.65990 -7.72291 -5.10076 0.74840 1.06507 1.42983 1.47987 1.54677 1.89925 1.96148 1.96252 2.55327 3.23609 3.33982 3.37869 3.42080 3.58788 3.75355 3.96734 3.99661 4.09136 4.14660 4.19029 4.27902 4.32964 4.41526 4.45546 4.54061 4.57737 4.63283 4.67353 4.72244 4.76450 4.78406 4.84638 4.85506 4.87405 4.93298 5.04913 5.11160 5.13714 5.14115 5.14612 5.37365 5.43533 5.50023 5.55998 5.61843 5.71047 5.73126 5.83663 6.00312 6.04281 6.26820 6.43964 6.73935 6.92107 7.28588 8.01766 8.41241 9.28331 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.004030 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.566461 B = 6945.800459 C = 8703.354821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.144 3.856 3 H 0.137 0.863 4 C 0.500 3.500 5 O -0.567 6.567 6 N -0.594 5.594 7 C 0.113 3.887 8 C -0.123 4.123 9 C 0.180 3.820 10 N -0.599 5.599 11 C -0.234 4.234 12 H 0.054 0.946 13 C -0.045 4.045 14 N -0.908 5.908 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.302 1.302 19 C 0.214 3.786 20 C -0.099 4.099 21 C -0.192 4.192 22 C -0.181 4.181 23 C -0.121 4.121 24 C 0.121 3.879 25 N -0.371 5.371 26 C 0.055 3.945 27 C -0.279 4.279 28 C 0.036 3.964 29 N -0.313 5.313 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.241 0.759 39 H 0.047 0.953 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.026 0.974 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.192 0.808 51 H 0.166 0.834 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 9.857 -1.699 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.039 3.961 3 H 0.154 0.846 4 C 0.286 3.714 5 O -0.445 6.445 6 N -0.326 5.326 7 C -0.009 4.009 8 C -0.163 4.163 9 C 0.073 3.927 10 N -0.318 5.318 11 C -0.365 4.365 12 H 0.072 0.928 13 C -0.240 4.240 14 N -0.555 5.555 15 Si 0.772 3.228 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.230 1.230 19 C 0.088 3.912 20 C -0.119 4.119 21 C -0.229 4.229 22 C -0.219 4.219 23 C -0.161 4.161 24 C -0.002 4.002 25 N -0.156 5.156 26 C -0.090 4.090 27 C -0.308 4.308 28 C -0.150 4.150 29 N -0.133 5.133 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.209 0.791 51 H 0.184 0.816 52 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.727 10.439 -0.694 18.889 hybrid contribution 0.727 -2.152 -1.268 2.602 sum -15.000 8.287 -1.962 17.249 Atomic orbital electron populations 1.22013 0.88281 1.04620 1.05226 1.21495 0.98108 0.97809 0.78706 0.84580 1.21206 0.81467 0.82976 0.85751 1.90669 1.56790 1.35416 1.61668 1.48279 1.15829 1.34962 1.33506 1.21909 0.90977 0.88596 0.99434 1.22030 0.95288 1.00079 0.98908 1.20398 0.84200 0.93365 0.94764 1.44278 1.01201 1.46054 1.40308 1.19088 1.00108 1.12867 1.04437 0.92836 1.25281 0.99681 1.00050 0.99033 1.70318 1.13158 1.44267 1.27779 0.85604 0.77524 0.77554 0.82148 1.20345 1.21999 1.23004 1.20117 0.89476 0.91021 0.90554 1.22555 0.99627 0.98516 0.91246 1.23128 1.00385 1.00237 0.99160 1.22627 0.91378 1.02550 1.05324 1.22143 0.94762 0.99287 0.99936 1.21610 0.93823 0.96192 0.88560 1.48627 1.19922 1.25183 1.21846 1.22938 1.00702 0.90710 0.94692 1.21816 0.98755 1.06651 1.03602 1.24317 0.99560 0.93970 0.97154 1.77344 1.02591 1.25308 1.08055 0.88471 0.88842 0.91110 0.88609 0.88526 0.91162 0.94284 0.91173 0.94886 0.93429 0.95474 0.91574 0.88559 0.89655 0.90714 0.89839 0.92528 0.95520 0.89044 0.90938 0.79077 0.81649 0.78753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.37 71.98 0.60 -1.53 16 2 C 0.14 3.03 2.87 44.24 0.13 3.16 16 3 H 0.14 2.36 6.25 -2.38 -0.01 2.35 16 4 C 0.50 13.95 7.13 87.66 0.62 14.57 16 5 O -0.57 -18.96 15.56 -3.04 -0.05 -19.01 16 6 N -0.59 -16.67 2.98 -819.74 -2.44 -19.11 16 7 C 0.11 2.82 6.24 86.22 0.54 3.36 16 8 C -0.12 -4.11 5.29 30.53 0.16 -3.95 16 9 C 0.18 6.69 2.59 45.02 0.12 6.81 16 10 N -0.60 -27.65 2.47 -677.89 -1.67 -29.33 16 11 C -0.23 -12.38 8.44 84.03 0.71 -11.67 16 12 H 0.05 2.96 6.90 -2.91 -0.02 2.94 16 13 C -0.04 -2.44 4.95 84.86 0.42 -2.02 16 14 N -0.91 -50.58 8.95 21.65 0.19 -50.39 16 15 Si 0.94 45.50 29.59 68.60 2.03 47.53 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 18 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 19 C 0.21 9.65 5.08 86.38 0.44 10.09 16 20 C -0.10 -4.25 4.44 -10.79 -0.05 -4.30 16 21 C -0.19 -6.50 10.18 30.59 0.31 -6.19 16 22 C -0.18 -6.80 10.25 30.59 0.31 -6.49 16 23 C -0.12 -4.56 5.30 30.67 0.16 -4.40 16 24 C 0.12 3.66 6.42 86.36 0.55 4.21 16 25 N -0.37 -9.29 3.51 -331.06 -1.16 -10.45 16 26 C 0.05 1.25 10.59 83.54 0.88 2.14 16 27 C -0.28 -6.50 10.80 21.99 0.24 -6.26 16 28 C 0.04 0.96 12.03 85.24 1.03 1.98 16 29 N -0.31 -8.99 12.02 -57.02 -0.69 -9.68 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.17 6.86 -2.39 -0.02 1.16 16 33 H 0.10 2.19 4.92 -2.39 -0.01 2.18 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.58 7.07 -2.39 -0.02 1.56 16 37 H 0.07 2.37 7.88 -2.39 -0.02 2.35 16 38 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 39 H 0.05 2.48 6.26 -2.39 -0.01 2.47 16 40 H 0.03 1.10 7.79 -2.39 -0.02 1.08 16 41 H 0.07 3.43 7.53 -2.38 -0.02 3.42 16 42 H 0.10 2.90 8.03 -2.39 -0.02 2.88 16 43 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 44 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 45 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.03 1.19 7.69 -2.38 -0.02 1.17 16 48 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.07 2.37 7.04 -2.39 -0.02 2.36 16 50 H 0.19 3.35 7.23 -2.91 -0.02 3.33 16 51 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 52 H 0.20 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -66.85 406.53 4.30 -62.56 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.90 Total: 28.37 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.18 Total: -0.49 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.77 Total: -118.96 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.85 4.30 -62.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.085 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds