Wall clock time and date at job start Wed Apr 1 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47098 * 2 1 4 4 C 1.50702 * 109.46887 * 240.00181 * 2 1 3 5 5 O 1.21282 * 119.99921 * 274.05089 * 4 2 1 6 6 N 1.34782 * 119.99878 * 94.05680 * 4 2 1 7 7 C 1.46924 * 120.62756 * 175.24474 * 6 4 2 8 8 C 1.53198 * 108.77108 * 126.41120 * 7 6 4 9 9 C 1.53041 * 109.31079 * 54.63486 * 8 7 6 10 10 N 1.46501 * 109.45746 * 178.62385 * 9 8 7 11 11 C 1.36938 * 120.00127 * 60.02935 * 10 9 8 12 12 H 1.07999 * 119.99737 * 20.43223 * 11 10 9 13 13 C 1.38809 * 120.00228 * 200.43742 * 11 10 9 14 14 N 1.31616 * 119.99854 * 4.32635 * 13 11 10 15 15 Si 1.86803 * 119.99952 * 184.33439 * 13 11 10 16 16 H 1.48493 * 109.47551 * 59.99492 * 15 13 11 17 17 H 1.48506 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46989 * 299.99310 * 15 13 11 19 19 C 1.46505 * 120.00286 * 240.02507 * 10 9 8 20 20 C 1.52999 * 109.46998 * 84.91607 * 19 10 9 21 21 C 1.53002 * 117.50040 * 243.62879 * 20 19 10 22 22 C 1.52996 * 117.50164 * 175.00030 * 20 19 10 23 23 C 1.53032 * 109.52761 * 298.63767 * 9 8 7 24 24 C 1.46925 * 120.62809 * 355.26558 * 6 4 2 25 25 N 1.46501 * 109.47102 * 120.00438 * 2 1 3 26 26 C 1.34945 * 126.03929 * 34.71433 * 25 2 1 27 27 C 1.35317 * 107.74472 * 179.84119 * 26 25 2 28 28 C 1.39870 * 107.91926 * 0.42453 * 27 26 25 29 29 N 1.30834 * 108.20209 * 359.73665 * 28 27 26 30 30 H 1.09002 * 109.46725 * 184.83206 * 1 2 3 31 31 H 1.08994 * 109.46922 * 304.83236 * 1 2 3 32 32 H 1.08999 * 109.47074 * 64.83692 * 1 2 3 33 33 H 1.08997 * 109.58813 * 6.62586 * 7 6 4 34 34 H 1.08998 * 109.58340 * 246.19699 * 7 6 4 35 35 H 1.08998 * 109.50001 * 294.67973 * 8 7 6 36 36 H 1.09002 * 109.49433 * 174.58349 * 8 7 6 37 37 H 1.09004 * 109.45953 * 58.65631 * 9 8 7 38 38 H 0.97002 * 120.00081 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.47394 * 204.91407 * 19 10 9 40 40 H 1.08998 * 109.46784 * 324.91942 * 19 10 9 41 41 H 1.09006 * 115.55135 * 29.32587 * 20 19 10 42 42 H 1.09000 * 117.49730 * 359.97438 * 21 20 19 43 43 H 1.08993 * 117.49937 * 145.02004 * 21 20 19 44 44 H 1.09004 * 117.50139 * 214.97971 * 22 20 19 45 45 H 1.09001 * 117.49504 * 0.02562 * 22 20 19 46 46 H 1.09002 * 109.50035 * 181.31401 * 23 9 8 47 47 H 1.09002 * 109.49890 * 301.40828 * 23 9 8 48 48 H 1.09002 * 109.58838 * 353.37486 * 24 6 4 49 49 H 1.09005 * 109.58390 * 113.66388 * 24 6 4 50 50 H 1.08005 * 126.12861 * 359.97438 * 26 25 2 51 51 H 1.08004 * 126.04059 * 180.16028 * 27 26 25 52 52 H 1.08003 * 125.89649 * 179.71786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1645 -1.9160 -1.2232 6 7 2.3348 -0.0059 -2.3391 7 6 2.9230 -0.6697 -3.5104 8 6 2.0715 -0.3431 -4.7414 9 6 1.9418 1.1756 -4.8786 10 7 1.1554 1.4923 -6.0734 11 6 -0.1319 1.0391 -6.1859 12 1 -0.6804 0.7467 -5.3028 13 6 -0.7317 0.9555 -7.4349 14 7 -0.0367 1.2302 -8.5184 15 14 -2.5252 0.4533 -7.5780 16 1 -3.3715 1.4234 -6.8378 17 1 -2.9232 0.4408 -9.0087 18 1 -2.7070 -0.9030 -7.0013 19 6 1.7463 2.2938 -7.1481 20 6 2.5383 1.3824 -8.0877 21 6 4.0484 1.6086 -8.1847 22 6 3.1379 2.0143 -9.3455 23 6 1.2411 1.7430 -3.6420 24 6 2.0830 1.4403 -2.3988 25 7 2.0184 -0.6907 1.1961 26 6 1.4374 -1.7527 1.7925 27 6 2.1967 -2.0929 2.8596 28 6 3.2736 -1.2025 2.9230 29 7 3.1677 -0.3616 1.9263 30 1 -0.3633 -1.0241 0.0866 31 1 -0.3633 0.5870 0.8435 32 1 -0.3633 0.4370 -0.9301 33 1 2.9365 -1.7478 -3.3511 34 1 3.9398 -0.3079 -3.6631 35 1 1.0813 -0.7839 -4.6262 36 1 2.5497 -0.7494 -5.6327 37 1 2.9338 1.6181 -4.9690 38 1 -0.4559 1.1722 -9.3912 39 1 0.9544 2.7920 -7.7072 40 1 2.4136 3.0412 -6.7189 41 1 2.1769 0.3568 -8.1630 42 1 4.4775 2.4070 -7.5793 43 1 4.6807 0.7318 -8.3237 44 1 3.1713 1.4042 -10.2483 45 1 2.9684 3.0794 -9.5034 46 1 1.1281 2.8216 -3.7507 47 1 0.2587 1.2825 -3.5372 48 1 1.5423 1.7543 -1.5059 49 1 3.0315 1.9742 -2.4583 50 1 0.5301 -2.2444 1.4739 51 1 2.0030 -2.9055 3.5442 52 1 4.0570 -1.2081 3.6664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716714308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:37 Heat of formation + Delta-G solvation = 109.255996 kcal Electronic energy + Delta-G solvation = -31717.078396 eV Core-core repulsion = 27720.687974 eV Total energy + Delta-G solvation = -3996.390422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44338 -40.02463 -37.79941 -36.46896 -34.81927 -34.51315 -32.17680 -30.92399 -30.17693 -29.87822 -29.44341 -26.25449 -25.56096 -24.42286 -22.91263 -22.35702 -21.47801 -21.22666 -20.99813 -19.93527 -19.34844 -18.80835 -17.62980 -17.36719 -16.36776 -15.82199 -15.38607 -15.13412 -14.72085 -14.54266 -14.39892 -14.01717 -13.73374 -13.69260 -13.64892 -13.49544 -13.22011 -13.06327 -12.88029 -12.60840 -12.52998 -12.22991 -12.08263 -11.74453 -11.63607 -11.14273 -10.94176 -10.92958 -10.84213 -10.79866 -10.69244 -10.64116 -10.34160 -10.14923 -9.96289 -9.94131 -9.72412 -9.41308 -9.27452 -8.78940 -8.64708 -8.53814 -8.32906 -6.80940 -5.72690 -3.22076 1.74224 2.13024 2.58536 2.79202 3.08888 3.34373 3.40200 3.41547 4.19758 4.31354 4.42615 4.51511 4.76351 4.85663 4.93659 4.95911 5.10337 5.19263 5.24530 5.34162 5.38952 5.44510 5.47042 5.55563 5.61715 5.73660 5.75839 5.77645 5.89478 5.93178 5.96096 6.00516 6.05635 6.18502 6.31934 6.35237 6.39307 6.52450 6.55409 6.58545 6.64872 6.71800 6.86208 6.91601 6.96708 7.02544 7.32279 7.38753 7.57211 7.60893 7.76830 7.79086 8.06789 8.39221 9.22390 9.82961 10.29803 11.27314 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002839 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.414785 B = 9858.759224 C =10994.336201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.123 0.877 4 C 0.506 3.494 5 O -0.534 6.534 6 N -0.597 5.597 7 C 0.112 3.888 8 C -0.136 4.136 9 C 0.181 3.819 10 N -0.590 5.590 11 C -0.247 4.247 12 H 0.068 0.932 13 C 0.001 3.999 14 N -0.900 5.900 15 Si 0.901 3.099 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.286 1.286 19 C 0.205 3.795 20 C -0.073 4.073 21 C -0.228 4.228 22 C -0.182 4.182 23 C -0.142 4.142 24 C 0.103 3.897 25 N -0.357 5.357 26 C 0.078 3.922 27 C -0.281 4.281 28 C 0.046 3.954 29 N -0.299 5.299 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.002 0.998 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.171 0.829 51 H 0.146 0.854 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 0.200 15.804 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.141 0.859 4 C 0.291 3.709 5 O -0.410 6.410 6 N -0.330 5.330 7 C -0.010 4.010 8 C -0.176 4.176 9 C 0.073 3.927 10 N -0.309 5.309 11 C -0.376 4.376 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.545 5.545 15 Si 0.732 3.268 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C 0.080 3.920 20 C -0.093 4.093 21 C -0.265 4.265 22 C -0.220 4.220 23 C -0.182 4.182 24 C -0.020 4.020 25 N -0.139 5.139 26 C -0.068 4.068 27 C -0.311 4.311 28 C -0.140 4.140 29 N -0.120 5.120 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.020 0.980 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.188 0.812 51 H 0.164 0.836 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.414 0.654 14.874 15.529 hybrid contribution -1.234 -1.138 -0.031 1.679 sum 3.180 -0.484 14.843 15.188 Atomic orbital electron populations 1.22136 0.90223 1.04576 1.04903 1.21217 0.96611 0.97397 0.81206 0.85919 1.20549 0.78236 0.87793 0.84364 1.90710 1.53276 1.13878 1.83149 1.48127 1.61425 1.09269 1.14166 1.21784 0.96317 0.98430 0.84471 1.22369 1.00215 0.99635 0.95368 1.20198 0.93433 0.92027 0.87082 1.44079 1.11043 1.59511 1.16274 1.19055 0.88501 1.38036 0.92017 0.91455 1.24955 0.98050 1.00899 0.95711 1.70096 1.34152 1.53186 0.97102 0.86398 0.85330 0.78479 0.76630 1.21297 1.21749 1.21270 1.20414 0.94671 0.89622 0.87331 1.22952 0.88167 1.02002 0.96214 1.23129 0.96807 1.02170 1.04431 1.22579 1.06160 1.00102 0.93141 1.22413 0.99797 1.01761 0.94248 1.21966 1.00526 0.79641 0.99884 1.48320 1.19575 1.24724 1.21302 1.22458 0.99745 0.90374 0.94213 1.21458 0.99409 1.06502 1.03700 1.23861 0.99136 0.93936 0.97071 1.77353 1.02449 1.24556 1.07621 0.90605 0.90151 0.88895 0.89733 0.91789 0.91291 0.90963 0.92837 0.93750 0.88701 0.97981 0.87911 0.90656 0.91043 0.90839 0.90480 0.90869 0.91221 0.90623 0.91154 0.81221 0.83576 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.82 37.16 0.33 -1.12 16 2 C 0.14 1.65 2.92 -69.08 -0.20 1.45 16 3 H 0.12 1.26 6.19 -51.93 -0.32 0.93 16 4 C 0.51 7.48 6.83 -10.98 -0.08 7.40 16 5 O -0.53 -9.78 15.90 5.56 0.09 -9.70 16 6 N -0.60 -8.37 2.97 -172.78 -0.51 -8.89 16 7 C 0.11 1.70 6.44 -3.71 -0.02 1.68 16 8 C -0.14 -2.36 5.31 -26.61 -0.14 -2.50 16 9 C 0.18 3.19 2.60 -67.89 -0.18 3.01 16 10 N -0.59 -12.76 2.47 -165.62 -0.41 -13.17 16 11 C -0.25 -5.97 8.49 -15.06 -0.13 -6.10 16 12 H 0.07 1.62 6.80 -52.49 -0.36 1.27 16 13 C 0.00 0.04 5.25 -17.43 -0.09 -0.06 16 14 N -0.90 -23.34 8.42 55.49 0.47 -22.87 16 15 Si 0.90 20.64 29.56 -169.99 -5.02 15.61 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 19 C 0.20 4.48 5.09 -4.04 -0.02 4.46 16 20 C -0.07 -1.53 4.36 -90.62 -0.40 -1.93 16 21 C -0.23 -4.10 10.18 -26.73 -0.27 -4.37 16 22 C -0.18 -3.47 10.25 -26.73 -0.27 -3.74 16 23 C -0.14 -2.10 5.30 -26.63 -0.14 -2.25 16 24 C 0.10 1.21 6.16 -3.72 -0.02 1.19 16 25 N -0.36 -4.64 3.32 -55.99 -0.19 -4.83 16 26 C 0.08 0.91 10.26 -17.22 -0.18 0.73 16 27 C -0.28 -3.02 10.80 -40.01 -0.43 -3.45 16 28 C 0.05 0.53 12.03 -17.37 -0.21 0.32 16 29 N -0.30 -4.15 12.58 30.62 0.39 -3.77 16 30 H 0.07 0.69 6.91 -51.93 -0.36 0.33 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.36 7.71 -51.93 -0.40 0.96 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 38 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 39 H 0.10 2.36 6.13 -51.93 -0.32 2.05 16 40 H 0.00 0.04 7.76 -51.93 -0.40 -0.36 16 41 H 0.10 2.53 7.61 -51.93 -0.40 2.13 16 42 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.14 7.04 -51.93 -0.37 0.77 16 48 H 0.08 0.70 5.48 -51.93 -0.28 0.42 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.17 1.59 7.13 -52.48 -0.37 1.21 16 51 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 52 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -29.72 406.94 -10.06 -39.78 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.55 Total: 6.96 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.45 Total: -5.27 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.26 Total: -53.52 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.72 -10.06 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.040 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds