Wall clock time and date at job start Wed Apr 1 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47098 * 2 1 4 4 C 1.50702 * 109.46887 * 240.00181 * 2 1 3 5 5 O 1.21282 * 119.99921 * 274.05089 * 4 2 1 6 6 N 1.34782 * 119.99878 * 94.05680 * 4 2 1 7 7 C 1.46924 * 120.62756 * 175.24474 * 6 4 2 8 8 C 1.53198 * 108.77108 * 126.41120 * 7 6 4 9 9 C 1.53041 * 109.31079 * 54.63486 * 8 7 6 10 10 N 1.46501 * 109.45746 * 178.62385 * 9 8 7 11 11 C 1.36938 * 120.00127 * 60.02935 * 10 9 8 12 12 H 1.07999 * 119.99737 * 20.43223 * 11 10 9 13 13 C 1.38809 * 120.00228 * 200.43742 * 11 10 9 14 14 N 1.31616 * 119.99854 * 4.32635 * 13 11 10 15 15 Si 1.86803 * 119.99952 * 184.33439 * 13 11 10 16 16 H 1.48493 * 109.47551 * 59.99492 * 15 13 11 17 17 H 1.48506 * 109.47152 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46989 * 299.99310 * 15 13 11 19 19 C 1.46505 * 120.00286 * 240.02507 * 10 9 8 20 20 C 1.52999 * 109.46998 * 84.91607 * 19 10 9 21 21 C 1.53002 * 117.50040 * 243.62879 * 20 19 10 22 22 C 1.52996 * 117.50164 * 175.00030 * 20 19 10 23 23 C 1.53032 * 109.52761 * 298.63767 * 9 8 7 24 24 C 1.46925 * 120.62809 * 355.26558 * 6 4 2 25 25 N 1.46501 * 109.47102 * 120.00438 * 2 1 3 26 26 C 1.34945 * 126.03929 * 34.71433 * 25 2 1 27 27 C 1.35317 * 107.74472 * 179.84119 * 26 25 2 28 28 C 1.39870 * 107.91926 * 0.42453 * 27 26 25 29 29 N 1.30834 * 108.20209 * 359.73665 * 28 27 26 30 30 H 1.09002 * 109.46725 * 184.83206 * 1 2 3 31 31 H 1.08994 * 109.46922 * 304.83236 * 1 2 3 32 32 H 1.08999 * 109.47074 * 64.83692 * 1 2 3 33 33 H 1.08997 * 109.58813 * 6.62586 * 7 6 4 34 34 H 1.08998 * 109.58340 * 246.19699 * 7 6 4 35 35 H 1.08998 * 109.50001 * 294.67973 * 8 7 6 36 36 H 1.09002 * 109.49433 * 174.58349 * 8 7 6 37 37 H 1.09004 * 109.45953 * 58.65631 * 9 8 7 38 38 H 0.97002 * 120.00081 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.47394 * 204.91407 * 19 10 9 40 40 H 1.08998 * 109.46784 * 324.91942 * 19 10 9 41 41 H 1.09006 * 115.55135 * 29.32587 * 20 19 10 42 42 H 1.09000 * 117.49730 * 359.97438 * 21 20 19 43 43 H 1.08993 * 117.49937 * 145.02004 * 21 20 19 44 44 H 1.09004 * 117.50139 * 214.97971 * 22 20 19 45 45 H 1.09001 * 117.49504 * 0.02562 * 22 20 19 46 46 H 1.09002 * 109.50035 * 181.31401 * 23 9 8 47 47 H 1.09002 * 109.49890 * 301.40828 * 23 9 8 48 48 H 1.09002 * 109.58838 * 353.37486 * 24 6 4 49 49 H 1.09005 * 109.58390 * 113.66388 * 24 6 4 50 50 H 1.08005 * 126.12861 * 359.97438 * 26 25 2 51 51 H 1.08004 * 126.04059 * 180.16028 * 27 26 25 52 52 H 1.08003 * 125.89649 * 179.71786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1645 -1.9160 -1.2232 6 7 2.3348 -0.0059 -2.3391 7 6 2.9230 -0.6697 -3.5104 8 6 2.0715 -0.3431 -4.7414 9 6 1.9418 1.1756 -4.8786 10 7 1.1554 1.4923 -6.0734 11 6 -0.1319 1.0391 -6.1859 12 1 -0.6804 0.7467 -5.3028 13 6 -0.7317 0.9555 -7.4349 14 7 -0.0367 1.2302 -8.5184 15 14 -2.5252 0.4533 -7.5780 16 1 -3.3715 1.4234 -6.8378 17 1 -2.9232 0.4408 -9.0087 18 1 -2.7070 -0.9030 -7.0013 19 6 1.7463 2.2938 -7.1481 20 6 2.5383 1.3824 -8.0877 21 6 4.0484 1.6086 -8.1847 22 6 3.1379 2.0143 -9.3455 23 6 1.2411 1.7430 -3.6420 24 6 2.0830 1.4403 -2.3988 25 7 2.0184 -0.6907 1.1961 26 6 1.4374 -1.7527 1.7925 27 6 2.1967 -2.0929 2.8596 28 6 3.2736 -1.2025 2.9230 29 7 3.1677 -0.3616 1.9263 30 1 -0.3633 -1.0241 0.0866 31 1 -0.3633 0.5870 0.8435 32 1 -0.3633 0.4370 -0.9301 33 1 2.9365 -1.7478 -3.3511 34 1 3.9398 -0.3079 -3.6631 35 1 1.0813 -0.7839 -4.6262 36 1 2.5497 -0.7494 -5.6327 37 1 2.9338 1.6181 -4.9690 38 1 -0.4559 1.1722 -9.3912 39 1 0.9544 2.7920 -7.7072 40 1 2.4136 3.0412 -6.7189 41 1 2.1769 0.3568 -8.1630 42 1 4.4775 2.4070 -7.5793 43 1 4.6807 0.7318 -8.3237 44 1 3.1713 1.4042 -10.2483 45 1 2.9684 3.0794 -9.5034 46 1 1.1281 2.8216 -3.7507 47 1 0.2587 1.2825 -3.5372 48 1 1.5423 1.7543 -1.5059 49 1 3.0315 1.9742 -2.4583 50 1 0.5301 -2.2444 1.4739 51 1 2.0030 -2.9055 3.5442 52 1 4.0570 -1.2081 3.6664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716714308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:34 Heat of formation + Delta-G solvation = 94.217216 kcal Electronic energy + Delta-G solvation = -31717.730526 eV Core-core repulsion = 27720.687974 eV Total energy + Delta-G solvation = -3997.042553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.34245 -41.14149 -39.24086 -37.93166 -36.15196 -35.65759 -33.78311 -32.14335 -31.45989 -30.98534 -30.33910 -27.95853 -26.83202 -25.57169 -24.10638 -23.77765 -22.97742 -22.29682 -21.92365 -21.25309 -20.94820 -19.97957 -18.77051 -18.31528 -18.03741 -17.12247 -16.81926 -16.28101 -16.11754 -15.60391 -15.58404 -15.41112 -15.18716 -15.06098 -14.88677 -14.56998 -14.38898 -14.30199 -13.82985 -13.64736 -13.46654 -13.35173 -13.23377 -13.15913 -12.93542 -12.67241 -12.63494 -12.51707 -12.32570 -12.24640 -12.13346 -12.00808 -11.77198 -11.67126 -11.51668 -11.28538 -11.11825 -10.92695 -10.48504 -10.35288 -10.06114 -9.73481 -9.51148 -8.58492 -7.64700 -5.12090 0.84028 1.20831 1.48306 1.50651 1.54295 1.55688 1.97755 2.04230 2.56503 3.22089 3.35419 3.45668 3.48514 3.60053 3.71667 3.93762 3.97636 4.11002 4.13231 4.19974 4.28294 4.35610 4.43043 4.47835 4.49983 4.54388 4.58692 4.66972 4.70155 4.77278 4.80597 4.84896 4.86342 4.87623 4.95329 5.03518 5.06316 5.15607 5.16579 5.17854 5.38031 5.44494 5.55315 5.57088 5.65468 5.74733 5.75991 5.93086 6.00660 6.03243 6.28316 6.51100 6.74907 6.94304 7.33039 8.04792 8.45088 9.32272 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002839 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.414785 B = 9858.759224 C =10994.336201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.140 0.860 4 C 0.501 3.499 5 O -0.576 6.576 6 N -0.598 5.598 7 C 0.122 3.878 8 C -0.122 4.122 9 C 0.177 3.823 10 N -0.601 5.601 11 C -0.238 4.238 12 H 0.066 0.934 13 C -0.048 4.048 14 N -0.914 5.914 15 Si 0.948 3.052 16 H -0.281 1.281 17 H -0.302 1.302 18 H -0.291 1.291 19 C 0.212 3.788 20 C -0.091 4.091 21 C -0.197 4.197 22 C -0.181 4.181 23 C -0.132 4.132 24 C 0.107 3.893 25 N -0.369 5.369 26 C 0.063 3.937 27 C -0.284 4.284 28 C 0.044 3.956 29 N -0.336 5.336 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.240 0.760 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.186 0.814 51 H 0.170 0.830 52 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 1.328 18.199 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.158 0.842 4 C 0.288 3.712 5 O -0.456 6.456 6 N -0.330 5.330 7 C -0.001 4.001 8 C -0.162 4.162 9 C 0.070 3.930 10 N -0.321 5.321 11 C -0.369 4.369 12 H 0.084 0.916 13 C -0.243 4.243 14 N -0.561 5.561 15 Si 0.780 3.220 16 H -0.208 1.208 17 H -0.229 1.229 18 H -0.218 1.218 19 C 0.086 3.914 20 C -0.112 4.112 21 C -0.234 4.234 22 C -0.219 4.219 23 C -0.172 4.172 24 C -0.014 4.014 25 N -0.152 5.152 26 C -0.082 4.082 27 C -0.313 4.313 28 C -0.142 4.142 29 N -0.157 5.157 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.126 0.874 49 H 0.110 0.890 50 H 0.203 0.797 51 H 0.188 0.812 52 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.420 1.805 17.302 18.221 hybrid contribution -1.501 -1.545 -0.731 2.275 sum 3.920 0.260 16.571 17.030 Atomic orbital electron populations 1.22159 0.88334 1.04851 1.06000 1.21320 0.97923 0.97409 0.79365 0.84238 1.21213 0.77286 0.87441 0.85267 1.90685 1.55049 1.15848 1.83985 1.48220 1.60925 1.10197 1.13623 1.21569 0.96745 0.97866 0.83955 1.22158 0.98749 0.99412 0.95863 1.20415 0.93881 0.91999 0.86690 1.44228 1.10769 1.59571 1.17491 1.19208 0.89726 1.36326 0.91620 0.91650 1.25478 1.00519 1.02304 0.95987 1.70278 1.34516 1.54654 0.96693 0.85636 0.82822 0.77887 0.75691 1.20757 1.22859 1.21754 1.20219 0.93895 0.89953 0.87304 1.22543 0.90690 0.99837 0.98118 1.23141 0.94598 1.02786 1.02909 1.22615 1.06037 1.00324 0.92894 1.22242 0.99038 1.01742 0.94148 1.22097 1.01473 0.78285 0.99593 1.48458 1.19733 1.25380 1.21611 1.22908 1.00507 0.90289 0.94513 1.21849 0.98908 1.06821 1.03757 1.24455 0.99738 0.93173 0.96843 1.77290 1.03409 1.26126 1.08869 0.91042 0.87940 0.88575 0.91333 0.89856 0.94300 0.92903 0.91578 0.94991 0.92175 0.96068 0.92060 0.88674 0.89942 0.90891 0.89799 0.90092 0.93036 0.87391 0.88969 0.79742 0.81228 0.77233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.82 71.98 0.63 -1.81 16 2 C 0.15 3.08 2.92 44.25 0.13 3.21 16 3 H 0.14 2.40 6.19 -2.39 -0.01 2.39 16 4 C 0.50 14.22 6.83 87.66 0.60 14.82 16 5 O -0.58 -21.10 15.90 -3.04 -0.05 -21.14 16 6 N -0.60 -15.79 2.97 -818.94 -2.43 -18.22 16 7 C 0.12 3.61 6.44 86.36 0.56 4.17 16 8 C -0.12 -4.28 5.31 30.67 0.16 -4.12 16 9 C 0.18 6.07 2.60 45.02 0.12 6.19 16 10 N -0.60 -26.13 2.47 -677.90 -1.67 -27.80 16 11 C -0.24 -11.75 8.49 84.03 0.71 -11.03 16 12 H 0.07 3.20 6.80 -2.91 -0.02 3.18 16 13 C -0.05 -2.48 5.25 84.86 0.45 -2.04 16 14 N -0.91 -49.14 8.42 21.65 0.18 -48.96 16 15 Si 0.95 43.55 29.56 68.60 2.03 45.58 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 C 0.21 9.26 5.09 86.38 0.44 9.70 16 20 C -0.09 -3.86 4.36 -10.79 -0.05 -3.91 16 21 C -0.20 -6.69 10.18 30.60 0.31 -6.38 16 22 C -0.18 -6.77 10.25 30.60 0.31 -6.45 16 23 C -0.13 -3.65 5.30 30.66 0.16 -3.49 16 24 C 0.11 2.20 6.16 86.35 0.53 2.73 16 25 N -0.37 -8.97 3.32 -331.04 -1.10 -10.07 16 26 C 0.06 1.37 10.26 83.54 0.86 2.23 16 27 C -0.28 -5.52 10.80 21.99 0.24 -5.28 16 28 C 0.04 0.90 12.03 85.24 1.02 1.93 16 29 N -0.34 -8.74 12.58 -57.02 -0.72 -9.46 16 30 H 0.07 1.20 6.91 -2.39 -0.02 1.18 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.07 2.28 7.00 -2.39 -0.02 2.26 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.04 1.58 7.71 -2.39 -0.02 1.56 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.12 7.86 -2.38 -0.02 2.10 16 38 H 0.24 13.06 8.31 -92.71 -0.77 12.29 16 39 H 0.06 3.06 6.13 -2.39 -0.01 3.04 16 40 H 0.02 0.83 7.76 -2.39 -0.02 0.82 16 41 H 0.06 3.13 7.61 -2.38 -0.02 3.11 16 42 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 45 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.05 1.62 7.04 -2.39 -0.02 1.61 16 48 H 0.11 1.57 5.48 -2.39 -0.01 1.56 16 49 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 50 H 0.19 3.20 7.13 -2.91 -0.02 3.17 16 51 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 52 H 0.21 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -67.14 406.94 4.33 -62.81 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.90 Total: 26.80 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 7.19 Total: 0.46 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -5.74 Total: -114.51 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.14 4.33 -62.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716714308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.029 kcal (2) G-P(sol) polarization free energy of solvation -67.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds