Wall clock time and date at job start Wed Apr 1 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47678 * 2 1 4 4 N 1.46503 * 109.47412 * 119.99977 * 2 1 3 5 5 C 1.36936 * 119.99809 * 274.99934 * 4 2 1 6 6 H 1.08003 * 120.00479 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31624 * 120.00377 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00314 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47275 * 89.99724 * 9 7 5 11 11 H 1.48492 * 109.47541 * 210.00233 * 9 7 5 12 12 H 1.48504 * 109.46555 * 330.00235 * 9 7 5 13 13 C 1.52998 * 109.47048 * 239.99844 * 2 1 3 14 14 H 1.08999 * 110.91758 * 302.44669 * 13 2 1 15 15 C 1.55157 * 111.00752 * 178.54852 * 13 2 1 16 16 C 1.54324 * 102.94316 * 206.42516 * 15 13 2 17 17 N 1.47019 * 107.27051 * 22.19110 * 16 15 13 18 18 C 1.34784 * 125.64415 * 181.02469 * 17 16 15 19 19 O 1.21282 * 119.99302 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99976 * 0.02562 * 18 17 16 21 21 C 1.50701 * 109.46716 * 180.02562 * 20 18 17 22 22 C 1.34857 * 125.96491 * 125.04963 * 21 20 18 23 23 N 1.36313 * 106.69132 * 179.97438 * 22 21 20 24 24 C 1.35416 * 107.39752 * 0.06206 * 23 22 21 25 25 N 1.30094 * 108.63314 * 359.91470 * 24 23 22 26 26 C 1.51043 * 123.98033 * 179.89412 * 24 23 22 27 27 C 1.53397 * 108.21228 * 344.06382 * 26 24 23 28 28 C 1.53144 * 109.23717 * 48.82146 * 27 26 24 29 29 C 1.46470 * 127.77942 * 180.10850 * 23 22 21 30 30 C 1.47421 * 108.70439 * 1.28819 * 17 16 15 31 31 H 1.09003 * 109.47678 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47024 * 300.00513 * 1 2 3 33 33 H 1.08997 * 109.47186 * 59.99870 * 1 2 3 34 34 H 0.97001 * 120.00006 * 94.99368 * 4 2 1 35 35 H 0.96994 * 120.00528 * 179.97438 * 8 7 5 36 36 H 1.09001 * 110.72435 * 88.05960 * 15 13 2 37 37 H 1.09004 * 110.71674 * 324.78459 * 15 13 2 38 38 H 1.08996 * 109.88228 * 262.76827 * 16 15 13 39 39 H 1.08999 * 110.01035 * 141.68138 * 16 15 13 40 40 H 1.08997 * 109.47158 * 60.00019 * 20 18 17 41 41 H 1.09003 * 109.47002 * 299.99485 * 20 18 17 42 42 H 1.07998 * 126.64929 * 359.92219 * 22 21 20 43 43 H 1.09004 * 109.71370 * 103.74390 * 26 24 23 44 44 H 1.09002 * 109.71349 * 224.38046 * 26 24 23 45 45 H 1.08998 * 109.50531 * 168.75126 * 27 26 24 46 46 H 1.08998 * 109.50744 * 288.84085 * 27 26 24 47 47 H 1.09002 * 109.47457 * 50.51779 * 28 27 26 48 48 H 1.08999 * 109.46847 * 170.51355 * 28 27 26 49 49 H 1.09006 * 109.58237 * 43.03909 * 29 23 22 50 50 H 1.09001 * 109.69359 * 282.70418 * 29 23 22 51 51 H 1.08993 * 110.36554 * 94.48636 * 30 17 16 52 52 H 1.09005 * 110.36390 * 216.80951 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8927 1.0406 2.4242 7 6 2.6114 -0.6619 3.5092 8 7 2.9245 -1.9390 3.4502 9 14 2.7892 0.2698 5.1185 10 1 1.5212 0.1786 5.8860 11 1 3.8934 -0.3234 5.9146 12 1 3.0942 1.6951 4.8341 13 6 2.0399 -0.7213 -1.2492 14 1 1.6546 -1.7399 -1.2950 15 6 3.5904 -0.7104 -1.3037 16 6 3.8839 -0.8151 -2.8152 17 7 2.6858 -0.3455 -3.5260 18 6 2.5341 -0.2994 -4.8645 19 8 1.4974 0.1089 -5.3435 20 6 3.6527 -0.7553 -5.7657 21 6 3.2322 -0.6024 -7.2048 22 6 3.8978 0.0842 -8.1557 23 7 3.1737 -0.0357 -9.3043 24 6 2.0862 -0.7911 -9.0204 25 7 2.1295 -1.1263 -7.7642 26 6 1.0250 -1.1566 -10.0312 27 6 1.1770 -0.2283 -11.2429 28 6 2.6451 -0.2026 -11.6778 29 6 3.4790 0.5295 -10.6206 30 6 1.6801 0.0726 -2.5325 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2489 -1.6318 1.1526 35 1 3.2478 -2.3962 4.2421 36 1 4.0012 -1.5680 -0.7708 37 1 3.9840 0.2217 -0.8982 38 1 4.0907 -1.8516 -3.0817 39 1 4.7377 -0.1887 -3.0736 40 1 3.8796 -1.8018 -5.5622 41 1 4.5390 -0.1485 -5.5801 42 1 4.8243 0.6249 -8.0310 43 1 1.1557 -2.1928 -10.3431 44 1 0.0368 -1.0267 -9.5900 45 1 0.5606 -0.5965 -12.0630 46 1 0.8590 0.7785 -10.9721 47 1 3.0103 -1.2240 -11.7852 48 1 2.7322 0.3165 -12.6323 49 1 4.5394 0.3993 -10.8371 50 1 3.2318 1.5910 -10.6309 51 1 1.7501 1.1449 -2.3501 52 1 0.6785 -0.1907 -2.8726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716960517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:20 Heat of formation + Delta-G solvation = 5.689424 kcal Electronic energy + Delta-G solvation = -29990.794714 eV Core-core repulsion = 25989.913308 eV Total energy + Delta-G solvation = -4000.881406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.23969 -41.00985 -39.00354 -37.49162 -36.70887 -34.25748 -34.13728 -32.93891 -31.66616 -30.76730 -29.85570 -29.05739 -28.04486 -26.15747 -24.97275 -24.19872 -23.12693 -22.75492 -21.56384 -21.05381 -20.11495 -19.78583 -19.11792 -18.06604 -17.74114 -17.40524 -16.77827 -16.57023 -16.24872 -15.70366 -15.50355 -15.31082 -15.09822 -14.93779 -14.84295 -14.67079 -14.50303 -14.48382 -14.02752 -13.91733 -13.63413 -13.46281 -13.38097 -13.23459 -13.00376 -12.83752 -12.77569 -12.63071 -12.28684 -12.15222 -12.05582 -11.95961 -11.94743 -11.86095 -11.62711 -11.51936 -11.35563 -10.94311 -10.88432 -10.70334 -10.38537 -9.58457 -9.13223 -8.95748 -7.88954 -5.16019 1.10910 1.49897 1.50874 1.58857 1.73366 1.86860 1.99021 2.32848 2.59736 3.35058 3.43716 3.49068 3.62664 3.72893 3.73860 3.80824 3.86120 3.93915 4.13341 4.18241 4.28819 4.34008 4.36138 4.40152 4.41909 4.45686 4.53837 4.55221 4.61308 4.62835 4.71882 4.81904 4.82154 4.84017 4.93140 4.96524 4.98775 5.01719 5.07695 5.10198 5.22731 5.25525 5.27522 5.39184 5.40073 5.43373 5.56813 5.61405 5.83098 6.32980 6.34655 6.61551 7.26972 7.27610 7.40002 8.15657 8.40243 9.34267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.001708 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.363459 B =16390.974455 C =16748.232233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.729 5.729 5 C -0.232 4.232 6 H 0.073 0.927 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.966 3.034 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.271 1.271 13 C -0.093 4.093 14 H 0.073 0.927 15 C -0.112 4.112 16 C 0.104 3.896 17 N -0.622 5.622 18 C 0.525 3.475 19 O -0.576 6.576 20 C -0.039 4.039 21 C -0.023 4.023 22 C -0.041 4.041 23 N -0.456 5.456 24 C 0.187 3.813 25 N -0.516 5.516 26 C -0.036 4.036 27 C -0.120 4.120 28 C -0.129 4.129 29 C 0.094 3.906 30 C 0.122 3.878 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.208 0.792 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.092 0.908 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 4.457 -34.953 35.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.369 5.369 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.796 3.204 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.196 1.196 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.150 4.150 16 C -0.018 4.018 17 N -0.356 5.356 18 C 0.315 3.685 19 O -0.455 6.455 20 C -0.080 4.080 21 C -0.152 4.152 22 C -0.175 4.175 23 N -0.139 5.139 24 C -0.076 4.076 25 N -0.235 5.235 26 C -0.075 4.075 27 C -0.158 4.158 28 C -0.167 4.167 29 C -0.026 4.026 30 C -0.001 4.001 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.225 0.775 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.135 0.865 49 H 0.129 0.871 50 H 0.110 0.890 51 H 0.086 0.914 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.708 4.435 -34.937 35.530 hybrid contribution 0.355 0.325 1.380 1.462 sum 5.063 4.760 -33.556 34.268 Atomic orbital electron populations 1.22360 0.98430 1.00696 1.00458 1.20285 0.92194 0.94941 0.85180 0.93470 1.42495 1.78275 1.10270 1.05865 1.19569 1.34448 0.94068 0.88318 0.90909 1.25439 1.03302 0.96831 1.01048 1.69802 1.52830 1.10045 1.29179 0.85240 0.76660 0.78138 0.80333 1.22003 1.22334 1.19552 1.22481 0.96688 0.99165 0.93008 0.90893 1.22478 0.94667 1.03240 0.94568 1.22244 0.87355 1.00996 0.91171 1.48672 1.17919 1.64282 1.04724 1.20812 0.89282 0.77476 0.80951 1.90689 1.31323 1.48513 1.74996 1.19895 0.96626 1.04675 0.86774 1.20364 0.94653 1.04128 0.96067 1.22708 1.01878 1.07261 0.85662 1.45584 1.18571 1.39238 1.10510 1.23802 0.92730 0.98041 0.93004 1.69870 1.21343 1.25782 1.06466 1.20320 0.94089 1.01352 0.91735 1.21671 0.97626 0.99476 0.97012 1.21916 0.94073 1.02020 0.98653 1.22339 1.02799 0.98954 0.78542 1.22106 0.92330 0.98567 0.87127 0.94075 0.94326 0.91890 0.79450 0.94224 0.90519 0.91030 0.89774 0.88615 0.87007 0.84456 0.77487 0.88645 0.90172 0.87821 0.91862 0.90717 0.86471 0.87091 0.88966 0.91377 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 9.34 71.98 0.67 -5.22 16 2 C 0.18 7.08 2.41 44.99 0.11 7.19 16 3 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 4 N -0.73 -35.53 4.82 -322.95 -1.56 -37.09 16 5 C -0.23 -12.61 9.93 84.03 0.83 -11.78 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 8 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 9 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.09 -3.03 2.64 -9.33 -0.02 -3.05 16 14 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -3.20 6.13 31.78 0.19 -3.01 16 16 C 0.10 2.29 6.48 86.73 0.56 2.85 16 17 N -0.62 -17.37 3.32 -811.37 -2.70 -20.07 16 18 C 0.52 16.09 7.84 87.66 0.69 16.77 16 19 O -0.58 -23.34 15.82 -3.04 -0.05 -23.38 16 20 C -0.04 -0.86 5.46 29.10 0.16 -0.71 16 21 C -0.02 -0.60 5.87 41.41 0.24 -0.35 16 22 C -0.04 -0.78 11.53 83.22 0.96 0.18 16 23 N -0.46 -8.10 3.13 -513.81 -1.61 -9.71 16 24 C 0.19 4.45 7.65 138.24 1.06 5.50 16 25 N -0.52 -16.21 10.62 -175.68 -1.86 -18.07 16 26 C -0.04 -0.57 6.33 30.09 0.19 -0.38 16 27 C -0.12 -0.98 5.96 30.78 0.18 -0.79 16 28 C -0.13 -0.61 5.94 30.73 0.18 -0.43 16 29 C 0.09 0.72 6.98 86.47 0.60 1.32 16 30 C 0.12 3.76 5.57 86.93 0.48 4.25 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.99 7.45 -2.39 -0.02 1.97 16 34 H 0.37 19.57 7.80 -92.71 -0.72 18.85 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.14 1.89 8.11 -2.39 -0.02 1.87 16 42 H 0.21 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.10 1.29 8.14 -2.38 -0.02 1.28 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 47 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 48 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 50 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.07 2.07 8.01 -2.39 -0.02 2.05 16 52 H 0.06 2.04 7.95 -2.38 -0.02 2.02 16 Total: -1.00 -81.57 414.87 2.27 -79.30 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.18 Total: 30.46 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 7.56 Total: 8.62 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -7.45 Total: -142.96 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -81.57 2.27 -79.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716960517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.989 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds