Wall clock time and date at job start Wed Apr 1 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47390 * 2 1 4 4 N 1.46502 * 109.47122 * 119.99997 * 2 1 3 5 5 C 1.36941 * 119.99721 * 274.99977 * 4 2 1 6 6 H 1.07998 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99490 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99680 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00324 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46943 * 90.00042 * 9 7 5 11 11 H 1.48499 * 109.47149 * 210.00186 * 9 7 5 12 12 H 1.48495 * 109.46966 * 329.99872 * 9 7 5 13 13 C 1.52998 * 109.47406 * 239.99953 * 2 1 3 14 14 H 1.09002 * 110.88494 * 302.42815 * 13 2 1 15 15 C 1.55158 * 111.00187 * 66.34760 * 13 2 1 16 16 C 1.54341 * 103.01848 * 153.38280 * 15 13 2 17 17 N 1.47014 * 107.26435 * 338.14213 * 16 15 13 18 18 C 1.34780 * 125.64638 * 178.84580 * 17 16 15 19 19 O 1.21635 * 119.99987 * 174.71944 * 18 17 16 20 20 C 1.47163 * 120.00014 * 354.72611 * 18 17 16 21 21 C 1.38403 * 126.88701 * 6.02296 * 20 18 17 22 22 C 1.39668 * 105.36168 * 179.97438 * 21 20 18 23 23 N 1.30864 * 107.85961 * 359.74212 * 22 21 20 24 24 N 1.28442 * 110.93060 * 0.43995 * 23 22 21 25 25 C 1.46500 * 125.19306 * 179.82078 * 24 23 22 26 26 C 1.52995 * 109.47070 * 275.38582 * 25 24 23 27 27 C 1.53777 * 113.61493 * 174.44981 * 26 25 24 28 28 C 1.53779 * 87.17419 * 139.93894 * 27 26 25 29 29 C 1.53783 * 113.61346 * 271.94467 * 26 25 24 30 30 C 1.47425 * 108.70363 * 358.58536 * 17 16 15 31 31 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47423 * 300.00262 * 1 2 3 33 33 H 1.09004 * 109.47055 * 60.00276 * 1 2 3 34 34 H 0.96999 * 119.99927 * 94.99969 * 4 2 1 35 35 H 0.97001 * 120.00336 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.72103 * 271.94081 * 15 13 2 37 37 H 1.08994 * 110.72546 * 35.04012 * 15 13 2 38 38 H 1.09001 * 109.98998 * 218.66325 * 16 15 13 39 39 H 1.09007 * 109.77663 * 97.49681 * 16 15 13 40 40 H 1.08006 * 127.31635 * 359.94281 * 21 20 18 41 41 H 1.07997 * 126.06595 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46949 * 155.38267 * 25 24 23 43 43 H 1.09005 * 109.46818 * 35.38524 * 25 24 23 44 44 H 1.09001 * 112.84897 * 43.24767 * 26 25 24 45 45 H 1.09001 * 113.61297 * 254.52514 * 27 26 25 46 46 H 1.09000 * 113.61358 * 25.34335 * 27 26 25 47 47 H 1.09005 * 113.61659 * 89.15359 * 28 27 26 48 48 H 1.08998 * 113.61587 * 220.05796 * 28 27 26 49 49 H 1.08995 * 113.61322 * 334.56920 * 29 26 25 50 50 H 1.09003 * 113.60991 * 105.38781 * 29 26 25 51 51 H 1.09004 * 110.36444 * 143.19478 * 30 17 16 52 52 H 1.09004 * 110.36655 * 265.40184 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5092 8 7 2.7365 -0.0054 4.6431 9 14 3.0556 -2.4744 3.4254 10 1 4.4884 -2.6165 3.0622 11 1 2.8154 -3.1047 4.7484 12 1 2.2160 -3.1428 2.3990 13 6 2.0401 -0.7212 -1.2492 14 1 1.6547 -1.7399 -1.2943 15 6 1.6776 0.0688 -2.5344 16 6 2.7788 -0.3588 -3.5276 17 7 3.9164 -0.8465 -2.7343 18 6 5.0707 -1.3322 -3.2326 19 8 5.9840 -1.6192 -2.4822 20 6 5.2261 -1.5154 -4.6844 21 6 4.3339 -1.1316 -5.6704 22 6 4.9250 -1.5182 -6.8753 23 7 6.0750 -2.0773 -6.5969 24 7 6.2803 -2.0977 -5.3291 25 6 7.4668 -2.6548 -4.6748 26 6 7.2836 -4.1617 -4.4837 27 6 8.5306 -4.8680 -3.9262 28 6 7.5754 -5.7046 -3.0588 29 6 6.5806 -4.5348 -3.1679 30 6 3.5880 -0.7102 -1.3036 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.0598 -0.4627 5.4352 36 1 0.6921 -0.2202 -2.8998 37 1 1.7200 1.1425 -2.3520 38 1 3.0869 0.4941 -4.1323 39 1 2.4062 -1.1564 -4.1705 40 1 3.3824 -0.6384 -5.5365 41 1 4.5088 -1.3772 -7.8618 42 1 7.6030 -2.1792 -3.7035 43 1 8.3439 -2.4711 -5.2955 44 1 6.8599 -4.6511 -5.3607 45 1 9.0702 -5.4535 -4.6707 46 1 9.1828 -4.2121 -3.3496 47 1 7.2308 -6.6176 -3.5446 48 1 7.9412 -5.8750 -2.0463 49 1 6.6989 -3.7881 -2.3827 50 1 5.5455 -4.8498 -3.3000 51 1 3.9934 -1.5504 -0.7397 52 1 3.9764 0.2305 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716961971.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:57 Heat of formation + Delta-G solvation = 84.294292 kcal Electronic energy + Delta-G solvation = -31468.358154 eV Core-core repulsion = 27470.885311 eV Total energy + Delta-G solvation = -3997.472843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.74471 -39.94993 -39.05663 -37.84737 -35.50378 -33.47439 -32.60209 -31.38346 -30.61753 -29.03148 -28.41892 -28.32679 -25.81976 -24.72049 -23.83930 -23.59518 -22.12426 -21.69690 -21.06072 -19.91269 -19.66025 -19.56502 -17.78611 -17.28009 -16.60069 -16.42544 -16.00648 -15.66377 -15.44157 -14.91417 -14.52166 -14.36286 -14.17977 -14.07766 -13.85878 -13.67840 -13.31530 -12.98487 -12.86137 -12.61073 -12.57103 -12.41525 -12.31738 -12.22506 -11.81247 -11.75226 -11.63325 -11.03751 -10.98550 -10.93142 -10.88621 -10.67708 -10.65695 -10.62033 -10.50934 -10.28634 -10.05715 -9.94099 -9.59206 -9.35494 -9.17049 -8.95518 -8.68865 -7.29785 -5.77971 -3.13929 1.12663 2.14674 2.44643 2.95959 3.09831 3.37616 3.40802 3.46223 4.13833 4.21978 4.37225 4.40901 4.50495 4.52591 4.58694 4.64783 4.69342 4.85697 4.96386 4.98247 5.08860 5.16634 5.18771 5.30020 5.39003 5.43202 5.45132 5.52275 5.53041 5.57485 5.61907 5.64952 5.70240 5.74169 5.78367 5.84067 5.93222 5.96802 6.02132 6.09626 6.16306 6.24610 6.27064 6.33266 6.35334 6.44451 6.57035 6.73609 6.95260 7.36375 7.85729 7.97229 8.02091 8.40849 9.18883 9.91621 10.10426 11.40333 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003283 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.856921 B = 8527.917506 C =10574.787275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.081 0.919 15 C -0.125 4.125 16 C 0.093 3.907 17 N -0.602 5.602 18 C 0.601 3.399 19 O -0.536 6.536 20 C -0.027 4.027 21 C -0.204 4.204 22 C -0.008 4.008 23 N -0.280 5.280 24 N -0.251 5.251 25 C 0.119 3.881 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.142 4.142 29 C -0.138 4.138 30 C 0.121 3.879 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.060 0.940 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -5.211 -24.703 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.099 0.901 15 C -0.163 4.163 16 C -0.030 4.030 17 N -0.334 5.334 18 C 0.389 3.611 19 O -0.415 6.415 20 C -0.156 4.156 21 C -0.232 4.232 22 C -0.184 4.184 23 N -0.113 5.113 24 N -0.038 5.038 25 C -0.001 4.001 26 C -0.144 4.144 27 C -0.165 4.165 28 C -0.179 4.179 29 C -0.175 4.175 30 C 0.000 4.000 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.186 0.814 41 H 0.201 0.799 42 H 0.142 0.858 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.120 0.880 50 H 0.079 0.921 51 H 0.099 0.901 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.606 -5.767 -24.548 25.832 hybrid contribution -0.523 -0.955 0.285 1.126 sum 5.083 -6.722 -24.262 25.684 Atomic orbital electron populations 1.22408 0.98515 1.00932 1.00588 1.20133 0.92132 0.95459 0.84249 0.92312 1.42798 1.79845 1.09369 1.07167 1.19033 1.37065 0.95471 0.85655 0.89169 1.24647 1.01358 0.97344 0.95566 1.69694 1.52558 1.35584 1.00277 0.86613 0.78616 0.86894 0.76790 1.20955 1.21790 1.20387 1.22731 0.93860 1.00461 0.95596 0.90061 1.22716 0.97778 1.01313 0.94506 1.22469 0.86716 0.98928 0.94905 1.48177 1.14748 1.61530 1.08990 1.16481 0.81776 0.77797 0.85075 1.90756 1.38845 1.52089 1.59761 1.21360 0.92551 1.07453 0.94194 1.22773 1.01866 1.07099 0.91496 1.23568 0.92483 1.02582 0.99735 1.73179 1.20286 1.20795 0.97014 1.45775 1.15430 1.39830 1.02800 1.22444 0.83695 0.94453 0.99477 1.22927 0.99286 0.93123 0.99078 1.22850 0.95655 0.98704 0.99289 1.22816 0.97387 0.97291 1.00445 1.23149 0.98281 0.98762 0.97293 1.22336 0.95250 1.03394 0.79002 0.93624 0.92242 0.94016 0.80697 0.93062 0.89718 0.89970 0.90804 0.90755 0.81379 0.79855 0.85761 0.88618 0.88816 0.91160 0.89560 0.90387 0.91026 0.88021 0.92108 0.90110 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.34 37.16 0.35 -2.21 16 2 C 0.19 3.24 2.41 -67.93 -0.16 3.07 16 3 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 4 N -0.75 -16.60 4.62 -53.43 -0.25 -16.85 16 5 C -0.24 -6.57 10.41 -15.06 -0.16 -6.73 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 9 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 13 C -0.11 -1.44 2.63 -88.48 -0.23 -1.67 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.20 5.59 -24.89 -0.14 -1.34 16 16 C 0.09 0.87 5.01 -3.06 -0.02 0.85 16 17 N -0.60 -7.88 3.33 -171.88 -0.57 -8.46 16 18 C 0.60 8.68 7.82 -12.64 -0.10 8.58 16 19 O -0.54 -9.01 12.92 5.25 0.07 -8.94 16 20 C -0.03 -0.34 6.92 -82.06 -0.57 -0.91 16 21 C -0.20 -2.07 9.43 -38.99 -0.37 -2.44 16 22 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 23 N -0.28 -3.39 11.90 30.59 0.36 -3.03 16 24 N -0.25 -3.11 3.35 -57.14 -0.19 -3.30 16 25 C 0.12 1.30 5.85 -4.04 -0.02 1.27 16 26 C -0.12 -1.26 3.97 -89.81 -0.36 -1.62 16 27 C -0.13 -1.07 7.64 -25.92 -0.20 -1.27 16 28 C -0.14 -1.33 8.10 -25.83 -0.21 -1.54 16 29 C -0.14 -1.58 7.41 -25.83 -0.19 -1.77 16 30 C 0.12 1.84 6.06 -2.53 -0.02 1.82 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.51 7.50 -51.93 -0.39 0.12 16 34 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 37 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 38 H 0.07 0.59 7.17 -51.93 -0.37 0.21 16 39 H 0.07 0.60 6.74 -51.93 -0.35 0.25 16 40 H 0.17 1.26 4.67 -52.48 -0.25 1.02 16 41 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 1.52 5.60 -51.93 -0.29 1.23 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.10 1.39 6.14 -51.93 -0.32 1.07 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 52 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -32.83 404.26 -9.65 -42.48 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.53 Total: 9.04 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.69 Total: -6.09 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.13 Total: -59.87 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.83 -9.65 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716961971.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.773 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds