Wall clock time and date at job start Wed Apr 1 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47390 * 2 1 4 4 N 1.46502 * 109.47122 * 119.99997 * 2 1 3 5 5 C 1.36941 * 119.99721 * 274.99977 * 4 2 1 6 6 H 1.07998 * 120.00149 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99490 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99680 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00324 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46943 * 90.00042 * 9 7 5 11 11 H 1.48499 * 109.47149 * 210.00186 * 9 7 5 12 12 H 1.48495 * 109.46966 * 329.99872 * 9 7 5 13 13 C 1.52998 * 109.47406 * 239.99953 * 2 1 3 14 14 H 1.09002 * 110.88494 * 302.42815 * 13 2 1 15 15 C 1.55158 * 111.00187 * 66.34760 * 13 2 1 16 16 C 1.54341 * 103.01848 * 153.38280 * 15 13 2 17 17 N 1.47014 * 107.26435 * 338.14213 * 16 15 13 18 18 C 1.34780 * 125.64638 * 178.84580 * 17 16 15 19 19 O 1.21635 * 119.99987 * 174.71944 * 18 17 16 20 20 C 1.47163 * 120.00014 * 354.72611 * 18 17 16 21 21 C 1.38403 * 126.88701 * 6.02296 * 20 18 17 22 22 C 1.39668 * 105.36168 * 179.97438 * 21 20 18 23 23 N 1.30864 * 107.85961 * 359.74212 * 22 21 20 24 24 N 1.28442 * 110.93060 * 0.43995 * 23 22 21 25 25 C 1.46500 * 125.19306 * 179.82078 * 24 23 22 26 26 C 1.52995 * 109.47070 * 275.38582 * 25 24 23 27 27 C 1.53777 * 113.61493 * 174.44981 * 26 25 24 28 28 C 1.53779 * 87.17419 * 139.93894 * 27 26 25 29 29 C 1.53783 * 113.61346 * 271.94467 * 26 25 24 30 30 C 1.47425 * 108.70363 * 358.58536 * 17 16 15 31 31 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47423 * 300.00262 * 1 2 3 33 33 H 1.09004 * 109.47055 * 60.00276 * 1 2 3 34 34 H 0.96999 * 119.99927 * 94.99969 * 4 2 1 35 35 H 0.97001 * 120.00336 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.72103 * 271.94081 * 15 13 2 37 37 H 1.08994 * 110.72546 * 35.04012 * 15 13 2 38 38 H 1.09001 * 109.98998 * 218.66325 * 16 15 13 39 39 H 1.09007 * 109.77663 * 97.49681 * 16 15 13 40 40 H 1.08006 * 127.31635 * 359.94281 * 21 20 18 41 41 H 1.07997 * 126.06595 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46949 * 155.38267 * 25 24 23 43 43 H 1.09005 * 109.46818 * 35.38524 * 25 24 23 44 44 H 1.09001 * 112.84897 * 43.24767 * 26 25 24 45 45 H 1.09001 * 113.61297 * 254.52514 * 27 26 25 46 46 H 1.09000 * 113.61358 * 25.34335 * 27 26 25 47 47 H 1.09005 * 113.61659 * 89.15359 * 28 27 26 48 48 H 1.08998 * 113.61587 * 220.05796 * 28 27 26 49 49 H 1.08995 * 113.61322 * 334.56920 * 29 26 25 50 50 H 1.09003 * 113.60991 * 105.38781 * 29 26 25 51 51 H 1.09004 * 110.36444 * 143.19478 * 30 17 16 52 52 H 1.09004 * 110.36655 * 265.40184 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5092 8 7 2.7365 -0.0054 4.6431 9 14 3.0556 -2.4744 3.4254 10 1 4.4884 -2.6165 3.0622 11 1 2.8154 -3.1047 4.7484 12 1 2.2160 -3.1428 2.3990 13 6 2.0401 -0.7212 -1.2492 14 1 1.6547 -1.7399 -1.2943 15 6 1.6776 0.0688 -2.5344 16 6 2.7788 -0.3588 -3.5276 17 7 3.9164 -0.8465 -2.7343 18 6 5.0707 -1.3322 -3.2326 19 8 5.9840 -1.6192 -2.4822 20 6 5.2261 -1.5154 -4.6844 21 6 4.3339 -1.1316 -5.6704 22 6 4.9250 -1.5182 -6.8753 23 7 6.0750 -2.0773 -6.5969 24 7 6.2803 -2.0977 -5.3291 25 6 7.4668 -2.6548 -4.6748 26 6 7.2836 -4.1617 -4.4837 27 6 8.5306 -4.8680 -3.9262 28 6 7.5754 -5.7046 -3.0588 29 6 6.5806 -4.5348 -3.1679 30 6 3.5880 -0.7102 -1.3036 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.0598 -0.4627 5.4352 36 1 0.6921 -0.2202 -2.8998 37 1 1.7200 1.1425 -2.3520 38 1 3.0869 0.4941 -4.1323 39 1 2.4062 -1.1564 -4.1705 40 1 3.3824 -0.6384 -5.5365 41 1 4.5088 -1.3772 -7.8618 42 1 7.6030 -2.1792 -3.7035 43 1 8.3439 -2.4711 -5.2955 44 1 6.8599 -4.6511 -5.3607 45 1 9.0702 -5.4535 -4.6707 46 1 9.1828 -4.2121 -3.3496 47 1 7.2308 -6.6176 -3.5446 48 1 7.9412 -5.8750 -2.0463 49 1 6.6989 -3.7881 -2.3827 50 1 5.5455 -4.8498 -3.3000 51 1 3.9934 -1.5504 -0.7397 52 1 3.9764 0.2305 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716961971.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:56 Heat of formation + Delta-G solvation = 64.042219 kcal Electronic energy + Delta-G solvation = -31469.236350 eV Core-core repulsion = 27470.885311 eV Total energy + Delta-G solvation = -3998.351039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.58516 -41.00360 -39.86182 -39.02147 -36.98336 -34.54796 -34.09762 -32.73907 -31.77600 -30.39865 -29.47530 -29.23342 -26.62459 -25.84926 -25.51325 -24.42170 -23.17798 -22.71202 -22.15047 -21.28816 -20.51823 -20.43601 -19.58581 -18.37193 -17.56175 -17.45230 -17.05827 -16.60591 -16.47175 -16.36755 -15.85065 -15.46929 -15.25065 -15.00197 -14.93923 -14.75069 -14.56551 -14.27503 -14.08201 -13.82063 -13.80772 -13.59878 -13.40504 -13.19698 -13.14441 -12.94010 -12.62473 -12.52632 -12.39147 -12.12221 -11.92891 -11.82721 -11.77928 -11.67831 -11.62920 -11.49314 -11.37799 -11.31111 -11.06644 -10.98023 -10.26232 -9.97371 -9.71677 -9.29330 -8.01461 -5.32595 0.20500 1.26815 1.34491 1.38235 1.43659 1.66850 1.99867 2.11133 2.47394 3.21971 3.31449 3.37253 3.51415 3.57791 3.62941 3.64742 3.75615 3.82109 3.86667 4.00006 4.14331 4.19384 4.31103 4.32935 4.37072 4.43276 4.50948 4.57690 4.62900 4.69433 4.69779 4.79921 4.81160 4.82442 4.85635 4.87586 4.95101 4.98010 4.98579 5.09106 5.10466 5.16997 5.23161 5.31637 5.41975 5.45413 5.57598 5.64444 5.74854 5.80914 6.23563 6.35804 6.90178 7.10181 7.10356 7.88280 8.04214 9.20480 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003283 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.856921 B = 8527.917506 C =10574.787275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 H 0.048 0.952 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.061 0.939 7 C -0.063 4.063 8 N -0.985 5.985 9 Si 0.944 3.056 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.252 1.252 13 C -0.096 4.096 14 H 0.087 0.913 15 C -0.113 4.113 16 C 0.087 3.913 17 N -0.601 5.601 18 C 0.593 3.407 19 O -0.574 6.574 20 C -0.053 4.053 21 C -0.187 4.187 22 C -0.005 4.005 23 N -0.298 5.298 24 N -0.262 5.262 25 C 0.118 3.882 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.144 4.144 30 C 0.123 3.877 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.361 0.639 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.199 0.801 41 H 0.221 0.779 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.046 0.954 51 H 0.049 0.951 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -6.146 -28.994 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.079 0.921 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.772 3.228 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.151 4.151 16 C -0.034 4.034 17 N -0.333 5.333 18 C 0.382 3.618 19 O -0.455 6.455 20 C -0.181 4.181 21 C -0.215 4.215 22 C -0.180 4.180 23 N -0.131 5.131 24 N -0.050 5.050 25 C -0.002 4.002 26 C -0.135 4.135 27 C -0.155 4.155 28 C -0.175 4.175 29 C -0.182 4.182 30 C 0.001 3.999 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.194 0.806 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.216 0.784 41 H 0.237 0.763 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.157 -6.694 -28.923 29.977 hybrid contribution -0.129 -0.528 1.530 1.624 sum 4.028 -7.222 -27.393 28.614 Atomic orbital electron populations 1.22260 0.96481 1.01423 1.01268 1.20409 0.93394 0.94920 0.83802 0.93381 1.42877 1.80095 1.09432 1.07297 1.19022 1.34124 0.94392 0.87248 0.92104 1.25373 1.02889 1.01747 0.95444 1.69862 1.55199 1.37442 1.01144 0.85569 0.78220 0.81987 0.76975 1.21504 1.22389 1.17618 1.22556 0.92142 1.01094 0.95807 0.89420 1.22762 0.99476 1.01042 0.91833 1.22790 0.85193 1.00527 0.94852 1.48203 1.15476 1.61221 1.08384 1.16866 0.81622 0.77398 0.85939 1.90740 1.40238 1.53629 1.60850 1.21320 0.93945 1.09380 0.93457 1.23173 1.02144 1.05604 0.90601 1.24242 0.91533 1.01055 1.01211 1.73178 1.21578 1.21558 0.96773 1.45877 1.15692 1.40406 1.02992 1.22420 0.84228 0.94675 0.98850 1.22844 0.99834 0.92772 0.98019 1.22826 0.95066 0.98307 0.99289 1.22838 0.96792 0.97069 1.00832 1.23067 0.98129 0.99314 0.97658 1.22105 0.96580 1.00880 0.80348 0.93180 0.95189 0.89708 0.80595 0.93574 0.86378 0.89363 0.88511 0.88356 0.78417 0.76299 0.87730 0.87163 0.88902 0.89157 0.89398 0.89147 0.91187 0.90727 0.93498 0.93285 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.34 71.98 0.67 -3.78 16 2 C 0.18 6.02 2.41 44.99 0.11 6.13 16 3 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 4 N -0.75 -33.54 4.62 -322.94 -1.49 -35.04 16 5 C -0.22 -12.08 10.41 84.03 0.87 -11.21 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 7 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 8 N -0.99 -63.71 13.97 21.65 0.30 -63.41 16 9 Si 0.94 46.67 27.74 68.60 1.90 48.57 16 10 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 12 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 13 C -0.10 -2.40 2.63 -9.41 -0.02 -2.42 16 14 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 15 C -0.11 -1.69 5.59 31.79 0.18 -1.51 16 16 C 0.09 1.29 5.01 86.74 0.43 1.72 16 17 N -0.60 -15.09 3.33 -815.94 -2.71 -17.80 16 18 C 0.59 17.17 7.82 86.59 0.68 17.85 16 19 O -0.57 -20.43 12.92 -4.14 -0.05 -20.48 16 20 C -0.05 -1.28 6.92 40.79 0.28 -1.00 16 21 C -0.19 -3.12 9.43 22.65 0.21 -2.91 16 22 C -0.01 -0.08 12.03 85.18 1.02 0.94 16 23 N -0.30 -6.59 11.90 -57.14 -0.68 -7.27 16 24 N -0.26 -6.27 3.35 -334.69 -1.12 -7.39 16 25 C 0.12 2.59 5.85 86.38 0.51 3.10 16 26 C -0.12 -2.30 3.97 -10.27 -0.04 -2.34 16 27 C -0.12 -1.86 7.64 31.12 0.24 -1.62 16 28 C -0.14 -2.53 8.10 31.18 0.25 -2.27 16 29 C -0.14 -3.44 7.41 31.18 0.23 -3.21 16 30 C 0.12 3.77 6.06 86.85 0.53 4.29 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.72 7.50 -2.38 -0.02 1.70 16 34 H 0.36 15.92 5.66 -92.71 -0.52 15.39 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.12 1.09 8.13 -2.39 -0.02 1.07 16 37 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 38 H 0.10 1.06 7.17 -2.39 -0.02 1.04 16 39 H 0.10 1.05 6.74 -2.38 -0.02 1.03 16 40 H 0.20 1.90 4.67 -2.91 -0.01 1.89 16 41 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.10 2.73 5.60 -2.39 -0.01 2.72 16 43 H 0.11 1.99 8.14 -2.38 -0.02 1.98 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.37 8.10 -2.39 -0.02 1.36 16 47 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.07 2.21 6.14 -2.39 -0.01 2.20 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.05 1.78 8.09 -2.39 -0.02 1.76 16 52 H 0.06 1.98 8.04 -2.38 -0.02 1.96 16 Total: -1.00 -76.98 404.26 3.10 -73.88 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.34 Total: 30.46 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.62 Total: -1.52 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.70 Total: -130.91 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.57 kcal Total: -76.98 3.10 -73.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716961971.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.920 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds