Wall clock time and date at job start Wed Apr 1 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47393 * 2 1 4 4 N 1.46508 * 109.46908 * 119.99655 * 2 1 3 5 5 C 1.36932 * 120.00199 * 274.99801 * 4 2 1 6 6 H 1.08001 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99419 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00402 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47072 * 90.00079 * 9 7 5 11 11 H 1.48500 * 109.46891 * 210.00162 * 9 7 5 12 12 H 1.48504 * 109.46934 * 330.00101 * 9 7 5 13 13 C 1.53003 * 109.47590 * 239.99842 * 2 1 3 14 14 H 1.09006 * 110.88249 * 300.68228 * 13 2 1 15 15 C 1.55155 * 111.00363 * 176.76002 * 13 2 1 16 16 C 1.54330 * 102.93538 * 206.42518 * 15 13 2 17 17 N 1.47015 * 107.27695 * 22.19184 * 16 15 13 18 18 C 1.34773 * 125.64910 * 181.09965 * 17 16 15 19 19 O 1.21637 * 119.99638 * 185.07507 * 18 17 16 20 20 C 1.47156 * 120.00545 * 5.06944 * 18 17 16 21 21 C 1.38413 * 126.87975 * 354.50829 * 20 18 17 22 22 C 1.39671 * 105.35929 * 179.97438 * 21 20 18 23 23 N 1.30870 * 107.85831 * 0.02562 * 22 21 20 24 24 N 1.28439 * 110.93181 * 359.71495 * 23 22 21 25 25 C 1.46494 * 125.19511 * 180.27798 * 24 23 22 26 26 C 1.53000 * 109.47218 * 276.59494 * 25 24 23 27 27 C 1.53777 * 113.61033 * 272.07283 * 26 25 24 28 28 C 1.53779 * 87.08245 * 220.02090 * 27 26 25 29 29 C 1.53782 * 113.61250 * 174.57704 * 26 25 24 30 30 C 1.47431 * 108.69944 * 1.05808 * 17 16 15 31 31 H 1.09004 * 109.46970 * 54.95882 * 1 2 3 32 32 H 1.08996 * 109.47343 * 294.96100 * 1 2 3 33 33 H 1.09003 * 109.47072 * 174.95604 * 1 2 3 34 34 H 0.96997 * 119.99479 * 95.00703 * 4 2 1 35 35 H 0.97009 * 120.00062 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.72162 * 324.78363 * 15 13 2 37 37 H 1.08999 * 110.72254 * 88.06229 * 15 13 2 38 38 H 1.09006 * 109.88066 * 262.76925 * 16 15 13 39 39 H 1.09000 * 110.01093 * 141.68408 * 16 15 13 40 40 H 1.08000 * 127.31831 * 0.02871 * 21 20 18 41 41 H 1.08000 * 126.07336 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46808 * 36.59594 * 25 24 23 43 43 H 1.09001 * 109.47257 * 156.58647 * 25 24 23 44 44 H 1.08998 * 112.84665 * 43.38109 * 26 25 24 45 45 H 1.09007 * 113.61984 * 334.56770 * 27 26 25 46 46 H 1.09001 * 113.61358 * 105.47376 * 27 26 25 47 47 H 1.09006 * 113.61516 * 270.88792 * 28 27 26 48 48 H 1.08992 * 113.69799 * 139.99416 * 28 27 26 49 49 H 1.08996 * 113.61232 * 254.52717 * 29 26 25 50 50 H 1.08996 * 113.61718 * 25.34674 * 29 26 25 51 51 H 1.08996 * 110.36618 * 217.02976 * 30 17 16 52 52 H 1.09005 * 110.45911 * 94.76271 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0404 2.4244 7 6 2.6112 -0.6618 3.5094 8 7 2.9241 -1.9389 3.4503 9 14 2.7889 0.2699 5.1186 10 1 1.5210 0.1788 5.8860 11 1 3.8932 -0.3234 5.9148 12 1 3.0941 1.6952 4.8343 13 6 2.0401 -0.7213 -1.2492 14 1 1.6796 -1.7496 -1.2785 15 6 3.5889 -0.6715 -1.3266 16 6 3.8629 -0.7847 -2.8412 17 7 2.6429 -0.3533 -3.5390 18 6 2.4702 -0.3267 -4.8754 19 8 1.4495 0.1368 -5.3475 20 6 3.5165 -0.8581 -5.7634 21 6 4.7679 -1.3173 -5.3907 22 6 5.3856 -1.7134 -6.5791 23 7 4.5468 -1.4951 -7.5596 24 7 3.4452 -1.0022 -7.1199 25 6 2.2901 -0.6455 -7.9472 26 6 2.4959 0.7520 -8.5351 27 6 1.9930 1.8838 -7.6235 28 6 1.4709 2.5707 -8.8964 29 6 1.3984 1.1704 -9.5278 30 6 1.6395 0.0444 -2.5348 31 1 -0.3633 0.5901 -0.8414 32 1 -0.3634 0.4337 0.9316 33 1 -0.3633 -1.0237 -0.0904 34 1 2.2490 -1.6317 1.1527 35 1 3.2475 -2.3962 4.2424 36 1 3.9643 0.2746 -0.9365 37 1 4.0291 -1.5126 -0.7911 38 1 4.0923 -1.8184 -3.1001 39 1 4.6965 -0.1395 -3.1187 40 1 5.1789 -1.3610 -4.3929 41 1 6.3795 -2.1257 -6.6725 42 1 2.1857 -1.3683 -8.7564 43 1 1.3884 -0.6530 -7.3349 44 1 3.5071 0.9085 -8.9105 45 1 1.2031 1.5748 -6.9388 46 1 2.7933 2.4333 -7.1277 47 1 2.2020 3.2259 -9.3702 48 1 0.4972 3.0440 -8.7708 49 1 1.7187 1.1438 -10.5693 50 1 0.4464 0.6653 -9.3647 51 1 0.6416 -0.2522 -2.8576 52 1 1.6777 1.1201 -2.3632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716961972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:01 Heat of formation + Delta-G solvation = 63.717591 kcal Electronic energy + Delta-G solvation = -31012.639920 eV Core-core repulsion = 27014.274804 eV Total energy + Delta-G solvation = -3998.365116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.57723 -40.98767 -39.81456 -38.94377 -36.84017 -34.49656 -34.05006 -32.52927 -31.45568 -30.72615 -29.22318 -28.73956 -26.57524 -26.39119 -25.33686 -24.38725 -23.25823 -22.69355 -22.18742 -21.05754 -20.49756 -20.34991 -19.13564 -18.35528 -17.59801 -17.44988 -17.09300 -16.56730 -16.39945 -16.26818 -15.66769 -15.38172 -15.22130 -14.97921 -14.87259 -14.74306 -14.66424 -14.12475 -13.91255 -13.75664 -13.70897 -13.48356 -13.23650 -13.15678 -13.09003 -12.81041 -12.75729 -12.49249 -12.28454 -12.16308 -11.95588 -11.82145 -11.72091 -11.57908 -11.52578 -11.42399 -11.33551 -11.26897 -11.02897 -10.88279 -10.24400 -9.96464 -9.70294 -8.94429 -7.88506 -5.14926 0.20766 1.28830 1.50598 1.51342 1.59040 1.65250 2.01292 2.11699 2.60183 3.24002 3.42022 3.45494 3.62451 3.63898 3.65812 3.70389 3.78993 3.87844 3.92710 4.17242 4.19247 4.25953 4.30405 4.33415 4.41435 4.42105 4.52694 4.59404 4.62974 4.71061 4.74823 4.76769 4.83741 4.85306 4.88259 4.91034 5.00013 5.03017 5.03849 5.08295 5.15527 5.23308 5.24119 5.35055 5.41578 5.51363 5.57814 5.58571 5.64068 5.76247 6.32914 6.35392 6.90860 7.09859 7.41178 8.17492 8.40846 9.34690 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002246 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.577568 B =12465.845871 C =13407.215883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.073 0.927 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.293 1.293 11 H -0.298 1.298 12 H -0.271 1.271 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.113 4.113 16 C 0.096 3.904 17 N -0.600 5.600 18 C 0.600 3.400 19 O -0.561 6.561 20 C -0.052 4.052 21 C -0.194 4.194 22 C -0.007 4.007 23 N -0.297 5.297 24 N -0.259 5.259 25 C 0.121 3.879 26 C -0.121 4.121 27 C -0.140 4.140 28 C -0.138 4.138 29 C -0.117 4.117 30 C 0.126 3.874 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.374 0.626 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.190 0.810 41 H 0.216 0.784 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 3.699 -26.141 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.220 1.220 11 H -0.225 1.225 12 H -0.196 1.196 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.151 4.151 16 C -0.026 4.026 17 N -0.332 5.332 18 C 0.388 3.612 19 O -0.442 6.442 20 C -0.180 4.180 21 C -0.223 4.223 22 C -0.182 4.182 23 N -0.130 5.130 24 N -0.047 5.047 25 C 0.002 3.998 26 C -0.140 4.140 27 C -0.177 4.177 28 C -0.176 4.176 29 C -0.155 4.155 30 C 0.004 3.996 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.206 0.794 41 H 0.233 0.767 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.096 0.904 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.003 4.049 -27.598 27.912 hybrid contribution 0.302 -0.054 2.296 2.316 sum 1.305 3.995 -25.302 25.649 Atomic orbital electron populations 1.22372 0.98186 1.00865 1.00612 1.20296 0.92342 0.94925 0.85022 0.93436 1.42505 1.78301 1.10301 1.05885 1.19535 1.34232 0.94024 0.88278 0.90922 1.25407 1.03442 0.96801 1.00969 1.69793 1.52904 1.09993 1.29134 0.85285 0.76622 0.78185 0.80557 1.22046 1.22496 1.19579 1.22472 0.96250 0.99639 0.93004 0.90388 1.22527 0.95169 1.03507 0.93876 1.22621 0.86857 1.01369 0.91727 1.48144 1.17132 1.64003 1.03876 1.16651 0.85142 0.78582 0.80777 1.90704 1.30399 1.48182 1.74905 1.21360 0.98629 1.11953 0.86073 1.23145 0.92850 1.04087 1.02214 1.24175 1.01428 1.04373 0.88251 1.73171 0.94417 1.16223 1.29146 1.45915 1.12087 1.42574 1.04118 1.22421 0.84647 0.97917 0.94832 1.22872 1.00393 0.92266 0.98472 1.23067 1.00696 0.96970 0.96967 1.22807 1.01922 0.96688 0.96141 1.22836 0.98051 0.96132 0.98474 1.22198 0.92002 0.99387 0.86034 0.91449 0.94595 0.93827 0.79430 0.94262 0.90911 0.90180 0.89148 0.88993 0.79350 0.76735 0.87334 0.87328 0.89535 0.89406 0.93901 0.89709 0.90690 0.89644 0.88957 0.90428 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 9.24 71.98 0.67 -4.64 16 2 C 0.18 6.44 2.40 44.99 0.11 6.55 16 3 H 0.05 1.71 8.07 -2.38 -0.02 1.69 16 4 N -0.73 -33.69 4.86 -322.93 -1.57 -35.26 16 5 C -0.23 -11.97 9.93 84.03 0.83 -11.13 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.97 -56.92 13.06 21.65 0.28 -56.63 16 9 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 C -0.09 -2.65 2.63 -9.40 -0.02 -2.67 16 14 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 15 C -0.11 -2.91 6.17 31.78 0.20 -2.71 16 16 C 0.10 1.94 5.02 86.73 0.43 2.37 16 17 N -0.60 -14.48 3.33 -815.96 -2.71 -17.19 16 18 C 0.60 15.78 7.81 86.59 0.68 16.45 16 19 O -0.56 -16.61 12.33 -4.15 -0.05 -16.67 16 20 C -0.05 -1.24 6.92 40.79 0.28 -0.96 16 21 C -0.19 -3.74 9.43 22.66 0.21 -3.53 16 22 C -0.01 -0.13 12.03 85.18 1.02 0.89 16 23 N -0.30 -6.73 11.90 -57.14 -0.68 -7.41 16 24 N -0.26 -6.00 3.35 -334.70 -1.12 -7.12 16 25 C 0.12 2.37 5.78 86.38 0.50 2.87 16 26 C -0.12 -2.14 3.96 -10.27 -0.04 -2.18 16 27 C -0.14 -2.83 7.13 31.12 0.22 -2.61 16 28 C -0.14 -2.06 8.08 31.12 0.25 -1.81 16 29 C -0.12 -1.53 7.64 31.12 0.24 -1.29 16 30 C 0.13 3.20 5.53 86.85 0.48 3.68 16 31 H 0.07 1.82 7.62 -2.39 -0.02 1.80 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.37 18.62 7.80 -92.71 -0.72 17.90 16 35 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 36 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.09 1.59 6.72 -2.38 -0.02 1.57 16 39 H 0.09 1.55 7.17 -2.39 -0.02 1.53 16 40 H 0.19 2.73 4.66 -2.91 -0.01 2.72 16 41 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.38 5.81 -2.39 -0.01 2.37 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 2.13 5.78 -2.38 -0.01 2.12 16 46 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.09 1.09 8.10 -2.39 -0.02 1.08 16 51 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 52 H 0.08 1.89 8.03 -2.38 -0.02 1.87 16 Total: -1.00 -65.40 406.40 2.90 -62.50 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.20 Total: 35.17 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 6.53 Total: -4.33 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.80 Total: -123.62 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.67 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.40 2.90 -62.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716961972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.214 kcal (2) G-P(sol) polarization free energy of solvation -65.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds