Wall clock time and date at job start Wed Apr 1 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46750 * 2 1 4 4 N 1.46501 * 109.47432 * 119.99376 * 2 1 3 5 5 C 1.36935 * 120.00208 * 275.00372 * 4 2 1 6 6 H 1.08003 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99884 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00164 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47779 * 90.00038 * 9 7 5 11 11 H 1.48502 * 109.46772 * 210.00069 * 9 7 5 12 12 H 1.48504 * 109.47160 * 329.99470 * 9 7 5 13 13 C 1.52997 * 109.47157 * 239.99767 * 2 1 3 14 14 H 1.08996 * 110.88814 * 308.56954 * 13 2 1 15 15 C 1.55161 * 111.00147 * 184.68916 * 13 2 1 16 16 C 1.54327 * 102.94251 * 206.42311 * 15 13 2 17 17 N 1.47024 * 107.26931 * 22.19178 * 16 15 13 18 18 C 1.34773 * 125.64799 * 181.02004 * 17 16 15 19 19 O 1.21552 * 120.00105 * 184.97948 * 18 17 16 20 20 C 1.47837 * 120.00313 * 4.98556 * 18 17 16 21 21 C 1.39946 * 120.94235 * 172.41515 * 20 18 17 22 22 N 1.32148 * 118.92382 * 179.97438 * 21 20 18 23 23 C 1.31867 * 120.96494 * 359.97438 * 22 21 20 24 24 C 1.50705 * 118.94913 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.46826 * 59.99977 * 24 23 22 26 26 C 1.52992 * 109.47207 * 299.99965 * 24 23 22 27 27 C 1.53000 * 109.47060 * 179.97438 * 24 23 22 28 28 N 1.31867 * 122.09907 * 0.27785 * 23 22 21 29 29 C 1.32150 * 120.96765 * 359.43914 * 28 23 22 30 30 C 1.47423 * 108.70288 * 1.29106 * 17 16 15 31 31 H 1.09001 * 109.47425 * 55.00288 * 1 2 3 32 32 H 1.09004 * 109.46925 * 175.00722 * 1 2 3 33 33 H 1.09001 * 109.47608 * 295.00132 * 1 2 3 34 34 H 0.96998 * 119.99935 * 95.00396 * 4 2 1 35 35 H 0.97003 * 119.99730 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71820 * 88.06207 * 15 13 2 37 37 H 1.09001 * 110.72244 * 324.78642 * 15 13 2 38 38 H 1.08997 * 109.88432 * 262.78126 * 16 15 13 39 39 H 1.08999 * 109.88358 * 141.61045 * 16 15 13 40 40 H 1.07999 * 120.53821 * 359.97438 * 21 20 18 41 41 H 1.08997 * 109.47156 * 299.99973 * 25 24 23 42 42 H 1.08997 * 109.47059 * 60.00057 * 25 24 23 43 43 H 1.09006 * 109.47022 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.47420 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.47119 * 300.00324 * 26 24 23 46 46 H 1.09003 * 109.47495 * 60.00021 * 26 24 23 47 47 H 1.09006 * 109.47370 * 300.00386 * 27 24 23 48 48 H 1.08998 * 109.46897 * 59.99897 * 27 24 23 49 49 H 1.08993 * 109.47132 * 180.02562 * 27 24 23 50 50 H 1.07991 * 120.54093 * 180.25454 * 29 28 23 51 51 H 1.09001 * 110.37074 * 94.48184 * 30 17 16 52 52 H 1.09001 * 110.36635 * 216.80395 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6114 -0.6617 3.5093 8 7 2.9235 -1.9390 3.4505 9 14 2.7891 0.2702 5.1185 10 1 1.5212 0.1789 5.8861 11 1 3.8934 -0.3231 5.9146 12 1 3.0942 1.6954 4.8341 13 6 2.0399 -0.7213 -1.2492 14 1 1.5709 -1.6998 -1.3516 15 6 3.5864 -0.8454 -1.2272 16 6 3.9481 -0.9250 -2.7254 17 7 2.8336 -0.3281 -3.4758 18 6 2.7563 -0.2240 -4.8173 19 8 1.8273 0.3704 -5.3283 20 6 3.8014 -0.8329 -5.6674 21 6 3.6626 -0.8750 -7.0593 22 7 4.6215 -1.4284 -7.7808 23 6 5.6956 -1.9348 -7.2075 24 6 6.7615 -2.5545 -8.0741 25 6 7.3035 -1.5041 -9.0455 26 6 6.1626 -3.7194 -8.8647 27 6 7.9009 -3.0687 -7.1919 28 7 5.8646 -1.9206 -5.8998 29 6 4.9583 -1.3821 -5.1029 30 6 1.8175 0.1438 -2.5175 31 1 -0.3634 0.5894 -0.8418 32 1 -0.3633 -1.0238 -0.0894 33 1 -0.3634 0.4343 0.9313 34 1 2.2491 -1.6316 1.1527 35 1 3.2462 -2.3963 4.2427 36 1 3.8931 -1.7532 -0.7077 37 1 4.0375 0.0343 -0.7679 38 1 4.0780 -1.9662 -3.0206 39 1 4.8645 -0.3664 -2.9158 40 1 2.7859 -0.4620 -7.5361 41 1 6.4919 -1.1374 -9.6740 42 1 7.7302 -0.6742 -8.4823 43 1 8.0747 -1.9522 -9.6721 44 1 6.9335 -4.1679 -9.4911 45 1 5.7763 -4.4678 -8.1726 46 1 5.3510 -3.3528 -9.4933 47 1 8.3276 -2.2384 -6.6289 48 1 7.5151 -3.8168 -6.4995 49 1 8.6720 -3.5164 -7.8187 50 1 5.1056 -1.3706 -4.0331 51 1 1.9702 1.1991 -2.2914 52 1 0.8160 -0.0186 -2.9159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716979174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:32 Heat of formation + Delta-G solvation = 34.139681 kcal Electronic energy + Delta-G solvation = -30450.076303 eV Core-core repulsion = 26450.428592 eV Total energy + Delta-G solvation = -3999.647710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.76816 -40.07039 -37.97123 -36.99385 -35.46770 -34.15350 -32.73910 -31.83032 -30.54958 -29.36995 -27.84275 -27.64759 -27.57126 -25.90103 -24.64734 -24.28159 -23.10699 -21.65814 -20.37085 -20.18670 -19.73737 -18.24565 -17.36593 -17.00152 -16.83264 -16.18680 -15.85957 -15.41742 -14.91792 -14.77573 -14.31742 -14.27672 -14.04221 -13.92779 -13.83913 -13.56276 -13.31541 -12.97568 -12.63614 -12.58582 -12.51359 -12.39991 -12.22103 -12.12630 -11.97876 -11.67765 -11.42230 -11.37656 -11.26829 -11.23973 -11.16430 -10.94190 -10.79185 -10.65531 -10.45115 -10.27208 -10.13028 -9.91366 -9.83710 -9.68526 -9.52666 -8.96863 -8.81273 -7.02195 -5.82122 -3.10700 0.12918 0.72606 2.58016 2.70874 3.38642 3.39829 3.45597 3.45897 3.46735 3.72478 4.13296 4.18906 4.46614 4.52155 4.56020 4.57156 4.58915 4.65500 4.83052 4.94378 5.01556 5.13652 5.23477 5.27731 5.28218 5.41704 5.45403 5.47797 5.52471 5.55210 5.58383 5.60118 5.74805 5.77983 5.81044 5.87602 5.91547 5.96529 5.99335 6.07623 6.08429 6.13624 6.30768 6.35260 6.53262 6.56659 6.57798 6.80392 7.03937 7.28464 7.65695 7.69101 7.88067 8.36377 9.48122 10.04326 10.39340 11.40359 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002113 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.543240 B =13247.814267 C =14396.061718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.080 3.920 17 N -0.607 5.607 18 C 0.582 3.418 19 O -0.535 6.535 20 C -0.244 4.244 21 C 0.209 3.791 22 N -0.517 5.517 23 C 0.342 3.658 24 C -0.003 4.003 25 C -0.136 4.136 26 C -0.136 4.136 27 C -0.130 4.130 28 N -0.513 5.513 29 C 0.150 3.850 30 C 0.115 3.885 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.181 0.819 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.202 0.798 51 H 0.074 0.926 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -1.513 -23.843 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.043 4.043 17 N -0.340 5.340 18 C 0.370 3.630 19 O -0.414 6.414 20 C -0.252 4.252 21 C 0.041 3.959 22 N -0.229 5.229 23 C 0.076 3.924 24 C -0.005 4.005 25 C -0.194 4.194 26 C -0.194 4.194 27 C -0.187 4.187 28 N -0.225 5.225 29 C -0.016 4.016 30 C -0.007 4.007 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.198 0.802 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.218 0.782 51 H 0.092 0.908 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.685 -1.481 -24.614 25.829 hybrid contribution -0.620 0.531 1.636 1.828 sum 7.065 -0.949 -22.979 24.059 Atomic orbital electron populations 1.22492 0.99152 1.00650 1.00501 1.20133 0.91860 0.95207 0.85371 0.93177 1.42360 1.78159 1.10670 1.05105 1.19206 1.36455 0.93862 0.87275 0.91219 1.24715 1.02209 0.95959 0.97984 1.69649 1.50964 1.08610 1.28860 0.86228 0.77295 0.78817 0.84064 1.21797 1.21821 1.20798 1.22758 0.95719 0.99538 0.94276 0.89964 1.22620 0.96089 1.04857 0.91690 1.22703 0.89552 0.97839 0.94161 1.48420 1.21998 1.59001 1.04557 1.17399 0.85044 0.79983 0.80593 1.90792 1.34797 1.42931 1.72830 1.21739 0.99149 1.07186 0.97092 1.23479 0.95744 0.87549 0.89110 1.68304 1.02253 1.11612 1.40773 1.23440 0.91438 0.89049 0.88458 1.19478 0.91602 0.95694 0.93745 1.21849 1.01401 0.97705 0.98457 1.21849 1.01435 0.96331 0.99809 1.21735 0.96252 1.01831 0.98914 1.68445 1.30947 1.17781 1.05372 1.25226 0.87084 0.86429 1.02821 1.22442 0.91752 0.98648 0.87850 0.94392 0.93570 0.92498 0.78276 0.93529 0.89042 0.89589 0.90558 0.90516 0.80249 0.91361 0.92676 0.91369 0.91366 0.92640 0.91364 0.91840 0.91779 0.92196 0.78224 0.90764 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.34 37.15 0.35 -2.47 16 2 C 0.18 3.26 2.46 -67.93 -0.17 3.09 16 3 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 4 N -0.72 -16.36 4.66 -53.43 -0.25 -16.61 16 5 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 9 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C -0.10 -1.46 2.62 -88.35 -0.23 -1.69 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.11 -1.50 5.93 -24.89 -0.15 -1.65 16 16 C 0.08 0.84 4.88 -3.06 -0.01 0.82 16 17 N -0.61 -7.57 3.32 -171.72 -0.57 -8.14 16 18 C 0.58 7.84 7.82 -12.33 -0.10 7.74 16 19 O -0.54 -8.69 16.76 5.32 0.09 -8.60 16 20 C -0.24 -2.85 5.90 -104.69 -0.62 -3.47 16 21 C 0.21 2.34 10.88 -16.78 -0.18 2.15 16 22 N -0.52 -5.77 9.77 -10.39 -0.10 -5.87 16 23 C 0.34 3.68 6.25 -157.07 -0.98 2.70 16 24 C 0.00 -0.03 0.92 -155.66 -0.14 -0.17 16 25 C -0.14 -0.97 8.36 37.16 0.31 -0.66 16 26 C -0.14 -0.98 8.37 37.15 0.31 -0.67 16 27 C -0.13 -0.97 7.66 37.16 0.28 -0.69 16 28 N -0.51 -5.72 8.98 -10.39 -0.09 -5.81 16 29 C 0.15 1.60 9.87 -16.77 -0.17 1.44 16 30 C 0.12 1.52 5.92 -2.41 -0.01 1.50 16 31 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.38 9.27 7.76 -40.82 -0.32 8.95 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.22 8.04 -51.93 -0.42 0.81 16 38 H 0.08 0.71 6.69 -51.93 -0.35 0.36 16 39 H 0.08 0.68 6.81 -51.93 -0.35 0.33 16 40 H 0.18 1.78 7.76 -52.49 -0.41 1.37 16 41 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 47 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 48 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.20 1.79 2.97 -52.79 -0.16 1.63 16 51 H 0.07 0.98 7.92 -51.93 -0.41 0.56 16 52 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -30.74 413.36 -9.42 -40.15 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.67 Total: 6.90 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.76 Total: 1.23 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.29 Total: -62.52 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.74 -9.42 -40.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716979174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.293 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds