Wall clock time and date at job start Wed Apr 1 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46750 * 2 1 4 4 N 1.46501 * 109.47432 * 119.99376 * 2 1 3 5 5 C 1.36935 * 120.00208 * 275.00372 * 4 2 1 6 6 H 1.08003 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99884 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00164 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47779 * 90.00038 * 9 7 5 11 11 H 1.48502 * 109.46772 * 210.00069 * 9 7 5 12 12 H 1.48504 * 109.47160 * 329.99470 * 9 7 5 13 13 C 1.52997 * 109.47157 * 239.99767 * 2 1 3 14 14 H 1.08996 * 110.88814 * 308.56954 * 13 2 1 15 15 C 1.55161 * 111.00147 * 184.68916 * 13 2 1 16 16 C 1.54327 * 102.94251 * 206.42311 * 15 13 2 17 17 N 1.47024 * 107.26931 * 22.19178 * 16 15 13 18 18 C 1.34773 * 125.64799 * 181.02004 * 17 16 15 19 19 O 1.21552 * 120.00105 * 184.97948 * 18 17 16 20 20 C 1.47837 * 120.00313 * 4.98556 * 18 17 16 21 21 C 1.39946 * 120.94235 * 172.41515 * 20 18 17 22 22 N 1.32148 * 118.92382 * 179.97438 * 21 20 18 23 23 C 1.31867 * 120.96494 * 359.97438 * 22 21 20 24 24 C 1.50705 * 118.94913 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.46826 * 59.99977 * 24 23 22 26 26 C 1.52992 * 109.47207 * 299.99965 * 24 23 22 27 27 C 1.53000 * 109.47060 * 179.97438 * 24 23 22 28 28 N 1.31867 * 122.09907 * 0.27785 * 23 22 21 29 29 C 1.32150 * 120.96765 * 359.43914 * 28 23 22 30 30 C 1.47423 * 108.70288 * 1.29106 * 17 16 15 31 31 H 1.09001 * 109.47425 * 55.00288 * 1 2 3 32 32 H 1.09004 * 109.46925 * 175.00722 * 1 2 3 33 33 H 1.09001 * 109.47608 * 295.00132 * 1 2 3 34 34 H 0.96998 * 119.99935 * 95.00396 * 4 2 1 35 35 H 0.97003 * 119.99730 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71820 * 88.06207 * 15 13 2 37 37 H 1.09001 * 110.72244 * 324.78642 * 15 13 2 38 38 H 1.08997 * 109.88432 * 262.78126 * 16 15 13 39 39 H 1.08999 * 109.88358 * 141.61045 * 16 15 13 40 40 H 1.07999 * 120.53821 * 359.97438 * 21 20 18 41 41 H 1.08997 * 109.47156 * 299.99973 * 25 24 23 42 42 H 1.08997 * 109.47059 * 60.00057 * 25 24 23 43 43 H 1.09006 * 109.47022 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.47420 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.47119 * 300.00324 * 26 24 23 46 46 H 1.09003 * 109.47495 * 60.00021 * 26 24 23 47 47 H 1.09006 * 109.47370 * 300.00386 * 27 24 23 48 48 H 1.08998 * 109.46897 * 59.99897 * 27 24 23 49 49 H 1.08993 * 109.47132 * 180.02562 * 27 24 23 50 50 H 1.07991 * 120.54093 * 180.25454 * 29 28 23 51 51 H 1.09001 * 110.37074 * 94.48184 * 30 17 16 52 52 H 1.09001 * 110.36635 * 216.80395 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6114 -0.6617 3.5093 8 7 2.9235 -1.9390 3.4505 9 14 2.7891 0.2702 5.1185 10 1 1.5212 0.1789 5.8861 11 1 3.8934 -0.3231 5.9146 12 1 3.0942 1.6954 4.8341 13 6 2.0399 -0.7213 -1.2492 14 1 1.5709 -1.6998 -1.3516 15 6 3.5864 -0.8454 -1.2272 16 6 3.9481 -0.9250 -2.7254 17 7 2.8336 -0.3281 -3.4758 18 6 2.7563 -0.2240 -4.8173 19 8 1.8273 0.3704 -5.3283 20 6 3.8014 -0.8329 -5.6674 21 6 3.6626 -0.8750 -7.0593 22 7 4.6215 -1.4284 -7.7808 23 6 5.6956 -1.9348 -7.2075 24 6 6.7615 -2.5545 -8.0741 25 6 7.3035 -1.5041 -9.0455 26 6 6.1626 -3.7194 -8.8647 27 6 7.9009 -3.0687 -7.1919 28 7 5.8646 -1.9206 -5.8998 29 6 4.9583 -1.3821 -5.1029 30 6 1.8175 0.1438 -2.5175 31 1 -0.3634 0.5894 -0.8418 32 1 -0.3633 -1.0238 -0.0894 33 1 -0.3634 0.4343 0.9313 34 1 2.2491 -1.6316 1.1527 35 1 3.2462 -2.3963 4.2427 36 1 3.8931 -1.7532 -0.7077 37 1 4.0375 0.0343 -0.7679 38 1 4.0780 -1.9662 -3.0206 39 1 4.8645 -0.3664 -2.9158 40 1 2.7859 -0.4620 -7.5361 41 1 6.4919 -1.1374 -9.6740 42 1 7.7302 -0.6742 -8.4823 43 1 8.0747 -1.9522 -9.6721 44 1 6.9335 -4.1679 -9.4911 45 1 5.7763 -4.4678 -8.1726 46 1 5.3510 -3.3528 -9.4933 47 1 8.3276 -2.2384 -6.6289 48 1 7.5151 -3.8168 -6.4995 49 1 8.6720 -3.5164 -7.8187 50 1 5.1056 -1.3706 -4.0331 51 1 1.9702 1.1991 -2.2914 52 1 0.8160 -0.0186 -2.9159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716979174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:30 Heat of formation + Delta-G solvation = 16.639944 kcal Electronic energy + Delta-G solvation = -30450.835148 eV Core-core repulsion = 26450.428592 eV Total energy + Delta-G solvation = -4000.406556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.62863 -41.09009 -39.13660 -37.68686 -36.92476 -35.07656 -34.28766 -32.98266 -31.70932 -30.84498 -29.08033 -28.24230 -28.19696 -26.89390 -25.92046 -25.47844 -24.33933 -22.91963 -21.21750 -21.10029 -21.04235 -19.25599 -19.02057 -18.11496 -17.59185 -17.34141 -16.90203 -16.54511 -16.18688 -15.71564 -15.56177 -15.38079 -14.99375 -14.97502 -14.76983 -14.66804 -14.60395 -14.11274 -13.92434 -13.70798 -13.49142 -13.23082 -13.16334 -13.12325 -12.83055 -12.80484 -12.70102 -12.56490 -12.27793 -12.16627 -12.15404 -12.06883 -11.98317 -11.94678 -11.86045 -11.63989 -11.51757 -11.34954 -11.14957 -10.90072 -10.70337 -10.37223 -9.83396 -8.94754 -7.89063 -5.15232 -0.74165 -0.11733 1.50050 1.50946 1.58275 1.58824 1.69949 2.59095 2.59998 2.64328 2.92425 3.18257 3.33887 3.44990 3.52084 3.60132 3.77737 3.82308 3.86601 3.98818 3.99174 4.14304 4.26245 4.30794 4.34838 4.42085 4.54402 4.59537 4.65258 4.71760 4.77489 4.78680 4.84046 4.88034 4.93657 4.98108 4.99862 5.01865 5.06096 5.09955 5.13475 5.20258 5.31251 5.33918 5.35419 5.39737 5.49276 5.58032 5.63282 5.73228 6.26890 6.33821 6.83025 6.86799 7.41043 8.17190 8.40684 9.34014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002113 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.543240 B =13247.814267 C =14396.061718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.729 5.729 5 C -0.229 4.229 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.962 3.038 10 H -0.293 1.293 11 H -0.298 1.298 12 H -0.271 1.271 13 C -0.094 4.094 14 H 0.082 0.918 15 C -0.111 4.111 16 C 0.085 3.915 17 N -0.606 5.606 18 C 0.585 3.415 19 O -0.568 6.568 20 C -0.253 4.253 21 C 0.206 3.794 22 N -0.524 5.524 23 C 0.336 3.664 24 C -0.007 4.007 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.125 4.125 28 N -0.522 5.522 29 C 0.156 3.844 30 C 0.121 3.879 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.374 0.626 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.188 0.812 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.217 0.783 51 H 0.077 0.923 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -1.317 -25.339 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.066 0.934 4 N -0.369 5.369 5 C -0.361 4.361 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.793 3.207 10 H -0.221 1.221 11 H -0.225 1.225 12 H -0.196 1.196 13 C -0.114 4.114 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.037 4.037 17 N -0.338 5.338 18 C 0.373 3.627 19 O -0.449 6.449 20 C -0.261 4.261 21 C 0.039 3.961 22 N -0.237 5.237 23 C 0.071 3.929 24 C -0.010 4.010 25 C -0.190 4.190 26 C -0.190 4.190 27 C -0.183 4.183 28 N -0.235 5.235 29 C -0.010 4.010 30 C -0.001 4.001 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.207 0.793 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.205 0.795 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.233 0.767 51 H 0.095 0.905 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.684 -1.256 -26.136 27.570 hybrid contribution -0.951 0.495 2.016 2.283 sum 7.733 -0.761 -24.120 25.341 Atomic orbital electron populations 1.22371 0.98165 1.00898 1.00604 1.20306 0.92368 0.95003 0.85054 0.93384 1.42496 1.78269 1.10332 1.05834 1.19533 1.34198 0.94027 0.88307 0.90947 1.25390 1.03470 0.96793 1.00905 1.69784 1.52923 1.09920 1.29109 0.85301 0.76601 0.78190 0.80646 1.22104 1.22509 1.19627 1.22542 0.96517 0.99209 0.93117 0.89982 1.22514 0.95055 1.03874 0.93456 1.22783 0.89644 0.99312 0.91940 1.48407 1.22213 1.58744 1.04388 1.17572 0.84901 0.79484 0.80697 1.90774 1.36192 1.44508 1.73393 1.21593 0.99227 1.08219 0.97016 1.23670 0.96023 0.87218 0.89188 1.68382 1.02490 1.12011 1.40779 1.24042 0.91745 0.88374 0.88779 1.19676 0.91211 0.96214 0.93851 1.21827 1.01652 0.97282 0.98198 1.21828 1.01846 0.95697 0.99612 1.21702 0.96380 1.01278 0.98892 1.68530 1.31078 1.18208 1.05662 1.25455 0.86478 0.85577 1.03491 1.22308 0.92053 0.98460 0.87309 0.91495 0.93768 0.94610 0.79334 0.94263 0.89917 0.90745 0.88687 0.88202 0.79540 0.92110 0.93364 0.89156 0.89155 0.93418 0.92105 0.92669 0.92707 0.90095 0.76722 0.90524 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.34 71.98 0.67 -4.57 16 2 C 0.18 6.28 2.46 44.99 0.11 6.39 16 3 H 0.05 1.70 7.91 -2.38 -0.02 1.68 16 4 N -0.73 -33.08 4.66 -322.94 -1.50 -34.59 16 5 C -0.23 -11.85 9.93 84.03 0.83 -11.01 16 6 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 9 Si 0.96 44.70 29.55 68.60 2.03 46.73 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C -0.09 -2.57 2.62 -9.32 -0.02 -2.60 16 14 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.11 -2.78 5.93 31.79 0.19 -2.59 16 16 C 0.08 1.59 4.88 86.73 0.42 2.02 16 17 N -0.61 -14.08 3.32 -815.48 -2.71 -16.80 16 18 C 0.58 15.02 7.82 86.78 0.68 15.69 16 19 O -0.57 -18.04 16.76 -3.88 -0.07 -18.11 16 20 C -0.25 -5.58 5.90 -19.91 -0.12 -5.70 16 21 C 0.21 4.45 10.88 85.06 0.93 5.37 16 22 N -0.52 -11.18 9.77 -186.80 -1.82 -13.01 16 23 C 0.34 6.80 6.25 138.71 0.87 7.67 16 24 C -0.01 -0.11 0.92 -52.93 -0.05 -0.16 16 25 C -0.13 -1.63 8.36 71.98 0.60 -1.03 16 26 C -0.13 -1.66 8.37 71.98 0.60 -1.05 16 27 C -0.12 -1.64 7.66 71.98 0.55 -1.08 16 28 N -0.52 -10.85 8.98 -186.80 -1.68 -12.53 16 29 C 0.16 3.04 9.87 85.06 0.84 3.88 16 30 C 0.12 3.01 5.92 86.93 0.51 3.52 16 31 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.37 18.28 7.76 -92.71 -0.72 17.56 16 35 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 38 H 0.10 1.51 6.69 -2.39 -0.02 1.49 16 39 H 0.10 1.49 6.81 -2.39 -0.02 1.48 16 40 H 0.19 3.61 7.76 -2.91 -0.02 3.59 16 41 H 0.06 0.85 8.01 -2.39 -0.02 0.83 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.06 0.86 8.01 -2.39 -0.02 0.84 16 47 H 0.05 0.81 8.04 -2.38 -0.02 0.79 16 48 H 0.05 0.82 8.03 -2.39 -0.02 0.80 16 49 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.22 3.31 2.97 -3.19 -0.01 3.30 16 51 H 0.08 1.89 7.92 -2.39 -0.02 1.87 16 52 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 Total: -1.00 -65.79 413.36 2.81 -62.98 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.20 Total: 30.18 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 8.09 Total: 11.21 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -7.44 Total: -132.99 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.07 Total: -18.11 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.79 2.81 -62.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716979174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.617 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds