Wall clock time and date at job start Wed Apr 1 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47524 * 2 1 4 4 C 1.53005 * 109.47383 * 120.00345 * 2 1 3 5 5 C 1.50702 * 109.46801 * 294.99677 * 4 2 1 6 6 O 1.21278 * 120.00078 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99792 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00076 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47565 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.43664 * 300.77968 * 9 8 7 11 11 C 1.53147 * 109.43397 * 60.68922 * 9 8 7 12 12 C 1.53698 * 108.87558 * 66.17422 * 11 9 8 13 13 H 1.09005 * 112.10141 * 187.62085 * 12 11 9 14 14 C 1.54609 * 107.83592 * 311.59643 * 12 11 9 15 15 C 1.55893 * 103.99310 * 88.87976 * 14 12 11 16 16 C 1.54600 * 104.90240 * 359.97438 * 15 14 12 17 17 H 1.09006 * 112.19258 * 146.81742 * 16 15 14 18 18 C 1.53146 * 109.43893 * 180.91246 * 9 8 7 19 19 N 1.48293 * 107.27486 * 64.01393 * 12 11 9 20 20 C 1.36935 * 128.21179 * 107.41429 * 19 12 11 21 21 H 1.08006 * 120.00240 * 34.90909 * 20 19 12 22 22 C 1.38815 * 120.00067 * 214.90965 * 20 19 12 23 23 N 1.31618 * 119.99987 * 5.00760 * 22 20 19 24 24 Si 1.86800 * 119.99795 * 185.00421 * 22 20 19 25 25 H 1.48496 * 109.46994 * 90.00556 * 24 22 20 26 26 H 1.48504 * 109.46969 * 209.99834 * 24 22 20 27 27 H 1.48496 * 109.47531 * 330.00226 * 24 22 20 28 28 N 1.46500 * 109.46935 * 239.99852 * 2 1 3 29 29 C 1.34950 * 126.03840 * 324.71813 * 28 2 1 30 30 C 1.35318 * 107.74188 * 179.83671 * 29 28 2 31 31 C 1.39869 * 107.92396 * 0.42250 * 30 29 28 32 32 N 1.30833 * 108.20135 * 359.73874 * 31 30 29 33 33 H 1.09001 * 109.47204 * 59.99458 * 1 2 3 34 34 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 35 35 H 1.09011 * 109.47152 * 299.99955 * 1 2 3 36 36 H 1.08995 * 109.47003 * 54.99495 * 4 2 1 37 37 H 1.08995 * 109.47553 * 174.99687 * 4 2 1 38 38 H 0.96995 * 120.00264 * 0.02562 * 7 5 4 39 39 H 1.09005 * 109.47185 * 300.00828 * 8 7 5 40 40 H 1.09004 * 109.46905 * 60.00355 * 8 7 5 41 41 H 1.09003 * 109.57326 * 185.99341 * 11 9 8 42 42 H 1.09005 * 109.56664 * 306.23579 * 11 9 8 43 43 H 1.08998 * 110.38450 * 207.48738 * 14 12 11 44 44 H 1.09002 * 110.37926 * 329.85441 * 14 12 11 45 45 H 1.09002 * 110.29938 * 241.11477 * 15 14 12 46 46 H 1.09000 * 110.31895 * 118.85221 * 15 14 12 47 47 H 1.08996 * 109.56989 * 53.64216 * 18 9 8 48 48 H 1.09002 * 109.57056 * 174.00893 * 18 9 8 49 49 H 0.97000 * 120.00046 * 180.02562 * 23 22 20 50 50 H 1.07991 * 126.12336 * 359.97438 * 29 28 2 51 51 H 1.08007 * 126.03446 * 180.16358 * 30 29 28 52 52 H 1.08004 * 125.89812 * 179.75366 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0118 1.0873 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.5976 0.3648 4.8933 9 6 2.1075 -0.3564 6.1425 10 1 1.6830 -1.3596 6.1808 11 6 3.6350 -0.4513 6.0883 12 6 4.2250 0.9644 6.1889 13 1 5.3023 0.9725 6.0225 14 6 3.4718 1.8640 5.1821 15 6 2.2581 2.4067 5.9961 16 6 2.4084 1.7783 7.4006 17 1 2.0481 2.4400 8.1884 18 6 1.6829 0.4234 7.3903 19 7 3.8599 1.4998 7.5228 20 6 4.6706 1.6916 8.6095 21 1 5.6977 1.9952 8.4701 22 6 4.1725 1.4957 9.8903 23 7 2.9524 1.0313 10.0580 24 14 5.2338 1.8913 11.3758 25 1 5.0177 3.3048 11.7762 26 1 4.8635 0.9959 12.5012 27 1 6.6637 1.6875 11.0310 28 7 2.0182 -0.6906 -1.1962 29 6 1.4430 -1.7592 -1.7864 30 6 2.1961 -2.0924 -2.8601 31 6 3.2736 -1.2028 -2.9228 32 7 3.1680 -0.3621 -1.9259 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3634 0.5139 0.8901 36 1 1.6053 -1.7198 1.2951 37 1 3.1263 -0.7996 1.2056 38 1 2.4884 -1.2159 3.7908 39 1 2.0329 1.3631 4.8474 40 1 0.5113 0.4438 4.9369 41 1 3.9932 -1.0562 6.9214 42 1 3.9392 -0.9095 5.1471 43 1 4.1105 2.6842 4.8542 44 1 3.1360 1.2778 4.3267 45 1 1.3221 2.0893 5.5364 46 1 2.3010 3.4940 6.0600 47 1 0.6054 0.5864 7.3699 48 1 1.9517 -0.1415 8.2829 49 1 2.6042 0.8948 10.9530 50 1 0.5417 -2.2576 -1.4614 51 1 2.0020 -2.9046 -3.5450 52 1 4.0573 -1.2087 -3.6659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716999541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:29 Heat of formation + Delta-G solvation = 155.801058 kcal Electronic energy + Delta-G solvation = -31698.817345 eV Core-core repulsion = 27704.445268 eV Total energy + Delta-G solvation = -3994.372077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.48661 -41.17464 -39.29090 -35.67901 -34.67076 -32.84626 -31.46688 -30.74846 -30.51054 -30.08086 -29.70001 -28.33629 -26.33489 -23.93484 -23.36358 -23.12960 -21.26897 -20.83065 -20.66796 -19.95173 -19.41692 -18.75913 -17.75254 -17.01821 -16.85189 -16.02117 -15.62875 -15.52733 -14.93923 -14.83210 -14.43773 -14.06555 -13.95277 -13.61272 -13.31523 -13.11594 -12.99484 -12.89674 -12.74674 -12.66700 -12.17165 -11.97210 -11.78032 -11.67204 -11.49965 -11.48428 -11.40988 -11.20209 -10.91442 -10.86545 -10.75928 -10.54550 -10.16882 -9.98984 -9.78471 -9.71619 -9.58725 -9.45003 -9.39041 -9.19645 -8.82700 -8.55273 -8.19769 -6.57835 -5.86334 -3.32946 1.68378 2.20101 2.61296 2.64891 3.33573 3.36482 3.40628 3.41383 4.19488 4.38594 4.41961 4.57810 4.70094 4.77174 4.93602 5.10940 5.16411 5.22467 5.27291 5.39676 5.40521 5.47524 5.49451 5.50735 5.58577 5.67467 5.73509 5.79064 5.81193 5.89744 5.91552 6.07821 6.09640 6.17169 6.29239 6.40698 6.42105 6.43969 6.56330 6.63369 6.66134 6.73265 6.81437 6.88279 6.96550 7.09003 7.15373 7.43252 7.52040 7.55627 7.68181 7.80095 8.24774 8.28719 9.08518 9.68033 10.59557 11.26265 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002203 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.090888 B =12705.500898 C =13047.041761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.113 0.887 4 C -0.156 4.156 5 C 0.513 3.487 6 O -0.543 6.543 7 N -0.717 5.717 8 C 0.002 3.998 9 C -0.084 4.084 10 H 0.049 0.951 11 C -0.121 4.121 12 C 0.148 3.852 13 H 0.063 0.937 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.186 3.814 17 H 0.080 0.920 18 C -0.114 4.114 19 N -0.578 5.578 20 C -0.235 4.235 21 H 0.065 0.935 22 C 0.012 3.988 23 N -0.897 5.897 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 N -0.365 5.365 29 C 0.055 3.945 30 C -0.279 4.279 31 C 0.041 3.959 32 N -0.296 5.296 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.394 0.606 39 H 0.194 0.806 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.035 0.965 48 H 0.099 0.901 49 H 0.254 0.746 50 H 0.171 0.829 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -7.427 -20.438 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.131 0.869 4 C -0.197 4.197 5 C 0.299 3.701 6 O -0.421 6.421 7 N -0.367 5.367 8 C -0.116 4.116 9 C -0.103 4.103 10 H 0.068 0.932 11 C -0.161 4.161 12 C 0.041 3.959 13 H 0.081 0.919 14 C -0.199 4.199 15 C -0.208 4.208 16 C 0.079 3.921 17 H 0.098 0.902 18 C -0.154 4.154 19 N -0.300 5.300 20 C -0.364 4.364 21 H 0.082 0.918 22 C -0.188 4.188 23 N -0.540 5.540 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.204 1.204 28 N -0.147 5.147 29 C -0.092 4.092 30 C -0.308 4.308 31 C -0.145 4.145 32 N -0.117 5.117 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.229 0.771 39 H 0.209 0.791 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.117 0.883 49 H 0.064 0.936 50 H 0.188 0.812 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.930 -5.619 -19.481 20.866 hybrid contribution 0.268 -1.450 0.495 1.556 sum -4.662 -7.069 -18.986 20.789 Atomic orbital electron populations 1.22326 0.92165 1.02887 1.05178 1.20955 0.95253 0.97059 0.79342 0.86941 1.22093 1.04123 1.00658 0.92864 1.20107 0.79807 0.85794 0.84442 1.90681 1.40397 1.24441 1.86613 1.46392 1.56440 1.27608 1.06293 1.25304 1.00149 1.03389 0.82760 1.21254 0.96215 0.98130 0.94690 0.93248 1.22156 0.94885 0.99674 0.99370 1.21540 0.96188 0.90545 0.87661 0.91893 1.23621 0.97418 0.99829 0.99019 1.23768 0.97517 1.00109 0.99440 1.21185 0.85914 0.93148 0.91836 0.90214 1.22130 0.97068 0.99188 0.96985 1.44942 1.04959 1.71671 1.08381 1.18817 0.94353 1.39986 0.83284 0.91751 1.25286 0.96978 0.98501 0.98023 1.69871 1.15537 1.47506 1.21109 0.86251 0.80017 0.77685 0.82516 1.21423 1.21650 1.20441 1.49007 1.19381 1.23803 1.22554 1.22511 0.99945 0.91262 0.95460 1.21509 0.99527 1.06631 1.03177 1.23896 0.99305 0.94034 0.97308 1.77415 1.02781 1.23815 1.07644 0.91685 0.92250 0.87729 0.88568 0.88077 0.77146 0.79088 0.93228 0.91747 0.94422 0.93029 0.88959 0.89461 0.92773 0.94599 0.88285 0.93615 0.81230 0.83721 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.58 37.15 0.32 -1.13 16 2 C 0.18 1.75 3.05 -67.93 -0.21 1.54 16 3 H 0.11 1.32 7.95 -51.93 -0.41 0.90 16 4 C -0.16 -1.44 5.50 -27.88 -0.15 -1.59 16 5 C 0.51 6.24 7.31 -10.98 -0.08 6.16 16 6 O -0.54 -8.21 13.97 5.56 0.08 -8.13 16 7 N -0.72 -8.75 4.39 -60.29 -0.26 -9.02 16 8 C 0.00 0.04 2.66 -4.05 -0.01 0.03 16 9 C -0.08 -1.41 2.75 -90.47 -0.25 -1.66 16 10 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.12 -2.12 5.27 -26.29 -0.14 -2.26 16 12 C 0.15 2.93 4.28 -65.73 -0.28 2.65 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.16 -2.81 5.79 -24.34 -0.14 -2.96 16 15 C -0.17 -3.13 5.75 -24.34 -0.14 -3.27 16 16 C 0.19 4.08 3.12 -65.74 -0.20 3.88 16 17 H 0.08 1.99 7.66 -51.93 -0.40 1.59 16 18 C -0.11 -2.31 5.18 -26.29 -0.14 -2.45 16 19 N -0.58 -13.74 2.73 -152.76 -0.42 -14.16 16 20 C -0.24 -6.25 10.28 -15.06 -0.15 -6.40 16 21 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 22 C 0.01 0.32 5.43 -17.43 -0.09 0.22 16 23 N -0.90 -24.48 10.38 55.49 0.58 -23.90 16 24 Si 0.91 21.14 29.56 -169.99 -5.02 16.11 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 N -0.36 -3.78 3.52 -54.87 -0.19 -3.98 16 29 C 0.05 0.46 10.59 -17.22 -0.18 0.28 16 30 C -0.28 -2.32 10.80 -40.01 -0.43 -2.75 16 31 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 32 N -0.30 -3.56 12.58 30.62 0.39 -3.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.40 7.16 -51.93 -0.37 0.03 16 35 H 0.10 1.09 5.95 -51.92 -0.31 0.78 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 4.08 7.36 -40.82 -0.30 3.78 16 39 H 0.19 3.12 1.13 -164.63 -0.19 2.94 16 40 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.04 0.54 6.76 -51.93 -0.35 0.19 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.47 4.04 -51.93 -0.21 1.26 16 45 H 0.09 1.49 4.83 -51.93 -0.25 1.24 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 2.37 6.67 -51.93 -0.35 2.02 16 49 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 50 H 0.17 0.92 7.27 -52.49 -0.38 0.54 16 51 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 52 H 0.18 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -30.28 387.12 -9.65 -39.93 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -8.13 Total: 10.03 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.50 Total: -9.55 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.09 Total: -54.23 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.28 -9.65 -39.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716999541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.734 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds