Wall clock time and date at job start Wed Apr 1 2020 05:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47524 * 2 1 4 4 C 1.53005 * 109.47383 * 120.00345 * 2 1 3 5 5 C 1.50702 * 109.46801 * 294.99677 * 4 2 1 6 6 O 1.21278 * 120.00078 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99792 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00076 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47565 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.43664 * 300.77968 * 9 8 7 11 11 C 1.53147 * 109.43397 * 60.68922 * 9 8 7 12 12 C 1.53698 * 108.87558 * 66.17422 * 11 9 8 13 13 H 1.09005 * 112.10141 * 187.62085 * 12 11 9 14 14 C 1.54609 * 107.83592 * 311.59643 * 12 11 9 15 15 C 1.55893 * 103.99310 * 88.87976 * 14 12 11 16 16 C 1.54600 * 104.90240 * 359.97438 * 15 14 12 17 17 H 1.09006 * 112.19258 * 146.81742 * 16 15 14 18 18 C 1.53146 * 109.43893 * 180.91246 * 9 8 7 19 19 N 1.48293 * 107.27486 * 64.01393 * 12 11 9 20 20 C 1.36935 * 128.21179 * 107.41429 * 19 12 11 21 21 H 1.08006 * 120.00240 * 34.90909 * 20 19 12 22 22 C 1.38815 * 120.00067 * 214.90965 * 20 19 12 23 23 N 1.31618 * 119.99987 * 5.00760 * 22 20 19 24 24 Si 1.86800 * 119.99795 * 185.00421 * 22 20 19 25 25 H 1.48496 * 109.46994 * 90.00556 * 24 22 20 26 26 H 1.48504 * 109.46969 * 209.99834 * 24 22 20 27 27 H 1.48496 * 109.47531 * 330.00226 * 24 22 20 28 28 N 1.46500 * 109.46935 * 239.99852 * 2 1 3 29 29 C 1.34950 * 126.03840 * 324.71813 * 28 2 1 30 30 C 1.35318 * 107.74188 * 179.83671 * 29 28 2 31 31 C 1.39869 * 107.92396 * 0.42250 * 30 29 28 32 32 N 1.30833 * 108.20135 * 359.73874 * 31 30 29 33 33 H 1.09001 * 109.47204 * 59.99458 * 1 2 3 34 34 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 35 35 H 1.09011 * 109.47152 * 299.99955 * 1 2 3 36 36 H 1.08995 * 109.47003 * 54.99495 * 4 2 1 37 37 H 1.08995 * 109.47553 * 174.99687 * 4 2 1 38 38 H 0.96995 * 120.00264 * 0.02562 * 7 5 4 39 39 H 1.09005 * 109.47185 * 300.00828 * 8 7 5 40 40 H 1.09004 * 109.46905 * 60.00355 * 8 7 5 41 41 H 1.09003 * 109.57326 * 185.99341 * 11 9 8 42 42 H 1.09005 * 109.56664 * 306.23579 * 11 9 8 43 43 H 1.08998 * 110.38450 * 207.48738 * 14 12 11 44 44 H 1.09002 * 110.37926 * 329.85441 * 14 12 11 45 45 H 1.09002 * 110.29938 * 241.11477 * 15 14 12 46 46 H 1.09000 * 110.31895 * 118.85221 * 15 14 12 47 47 H 1.08996 * 109.56989 * 53.64216 * 18 9 8 48 48 H 1.09002 * 109.57056 * 174.00893 * 18 9 8 49 49 H 0.97000 * 120.00046 * 180.02562 * 23 22 20 50 50 H 1.07991 * 126.12336 * 359.97438 * 29 28 2 51 51 H 1.08007 * 126.03446 * 180.16358 * 30 29 28 52 52 H 1.08004 * 125.89812 * 179.75366 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0118 1.0873 2.3633 7 7 1.9846 -0.3920 3.7001 8 6 1.5976 0.3648 4.8933 9 6 2.1075 -0.3564 6.1425 10 1 1.6830 -1.3596 6.1808 11 6 3.6350 -0.4513 6.0883 12 6 4.2250 0.9644 6.1889 13 1 5.3023 0.9725 6.0225 14 6 3.4718 1.8640 5.1821 15 6 2.2581 2.4067 5.9961 16 6 2.4084 1.7783 7.4006 17 1 2.0481 2.4400 8.1884 18 6 1.6829 0.4234 7.3903 19 7 3.8599 1.4998 7.5228 20 6 4.6706 1.6916 8.6095 21 1 5.6977 1.9952 8.4701 22 6 4.1725 1.4957 9.8903 23 7 2.9524 1.0313 10.0580 24 14 5.2338 1.8913 11.3758 25 1 5.0177 3.3048 11.7762 26 1 4.8635 0.9959 12.5012 27 1 6.6637 1.6875 11.0310 28 7 2.0182 -0.6906 -1.1962 29 6 1.4430 -1.7592 -1.7864 30 6 2.1961 -2.0924 -2.8601 31 6 3.2736 -1.2028 -2.9228 32 7 3.1680 -0.3621 -1.9259 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 -0.3634 0.5139 0.8901 36 1 1.6053 -1.7198 1.2951 37 1 3.1263 -0.7996 1.2056 38 1 2.4884 -1.2159 3.7908 39 1 2.0329 1.3631 4.8474 40 1 0.5113 0.4438 4.9369 41 1 3.9932 -1.0562 6.9214 42 1 3.9392 -0.9095 5.1471 43 1 4.1105 2.6842 4.8542 44 1 3.1360 1.2778 4.3267 45 1 1.3221 2.0893 5.5364 46 1 2.3010 3.4940 6.0600 47 1 0.6054 0.5864 7.3699 48 1 1.9517 -0.1415 8.2829 49 1 2.6042 0.8948 10.9530 50 1 0.5417 -2.2576 -1.4614 51 1 2.0020 -2.9046 -3.5450 52 1 4.0573 -1.2087 -3.6659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716999541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:28 Heat of formation + Delta-G solvation = 138.267776 kcal Electronic energy + Delta-G solvation = -31699.577645 eV Core-core repulsion = 27704.445268 eV Total energy + Delta-G solvation = -3995.132377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.66632 -42.07679 -40.36719 -36.59341 -35.90614 -34.53167 -32.95346 -32.26107 -31.62293 -31.16461 -30.65401 -29.27898 -27.77045 -25.38334 -24.83422 -24.21487 -22.19744 -21.92635 -21.80905 -20.94166 -20.73434 -20.32629 -18.81317 -18.40222 -17.88591 -17.21409 -16.83676 -16.53001 -16.39822 -15.90880 -15.65763 -15.23368 -14.82848 -14.61104 -14.50861 -14.42836 -14.19204 -14.07910 -13.81967 -13.67384 -13.47472 -13.31980 -13.11955 -13.07735 -12.92391 -12.78774 -12.62699 -12.46132 -12.40387 -12.27828 -12.17620 -11.95323 -11.57352 -11.54052 -11.25663 -11.00839 -10.94719 -10.79920 -10.68310 -10.47612 -10.34442 -9.48442 -9.44091 -8.47236 -7.87753 -5.35605 1.03580 1.45233 1.46369 1.50580 1.54564 1.67652 2.02505 2.40185 2.48618 3.29377 3.48915 3.62977 3.67009 3.87744 3.94607 3.99329 4.04370 4.07939 4.16366 4.22141 4.25545 4.31536 4.41101 4.47407 4.53123 4.57858 4.63721 4.73830 4.78399 4.82096 4.83405 4.87544 4.93210 5.01543 5.04035 5.04923 5.10509 5.20390 5.21708 5.24586 5.34201 5.42359 5.51983 5.58057 5.60702 5.64586 5.74426 5.81837 6.00607 6.20218 6.36816 6.62976 6.85505 7.11269 7.30753 7.72424 8.65297 9.22758 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027415 B = 0.002203 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.090888 B =12705.500898 C =13047.041761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.177 3.823 3 H 0.086 0.914 4 C -0.143 4.143 5 C 0.516 3.484 6 O -0.572 6.572 7 N -0.711 5.711 8 C 0.016 3.984 9 C -0.073 4.073 10 H 0.067 0.933 11 C -0.112 4.112 12 C 0.139 3.861 13 H 0.059 0.941 14 C -0.146 4.146 15 C -0.160 4.160 16 C 0.181 3.819 17 H 0.036 0.964 18 C -0.109 4.109 19 N -0.601 5.601 20 C -0.249 4.249 21 H 0.058 0.942 22 C -0.037 4.037 23 N -0.917 5.917 24 Si 0.965 3.035 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.272 1.272 28 N -0.373 5.373 29 C 0.055 3.945 30 C -0.285 4.285 31 C 0.035 3.965 32 N -0.345 5.345 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.408 0.592 39 H 0.181 0.819 40 H 0.049 0.951 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.049 0.951 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.248 0.752 50 H 0.201 0.799 51 H 0.168 0.832 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -9.356 -23.020 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.075 3.925 3 H 0.104 0.896 4 C -0.184 4.184 5 C 0.303 3.697 6 O -0.452 6.452 7 N -0.363 5.363 8 C -0.104 4.104 9 C -0.092 4.092 10 H 0.085 0.915 11 C -0.152 4.152 12 C 0.032 3.968 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.198 4.198 16 C 0.074 3.926 17 H 0.055 0.945 18 C -0.148 4.148 19 N -0.323 5.323 20 C -0.379 4.379 21 H 0.076 0.924 22 C -0.234 4.234 23 N -0.561 5.561 24 Si 0.794 3.206 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.197 1.197 28 N -0.156 5.156 29 C -0.091 4.091 30 C -0.314 4.314 31 C -0.150 4.150 32 N -0.166 5.166 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.244 0.756 39 H 0.196 0.804 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.218 0.782 51 H 0.185 0.815 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.277 -7.568 -22.100 23.949 hybrid contribution 0.382 -0.836 1.222 1.530 sum -4.895 -8.404 -20.878 23.032 Atomic orbital electron populations 1.22238 0.91178 1.04181 1.04194 1.20853 0.95920 0.95935 0.79827 0.89591 1.22006 1.04384 1.01275 0.90738 1.20536 0.78864 0.85403 0.84911 1.90688 1.41649 1.25883 1.87019 1.46193 1.56669 1.27931 1.05462 1.24802 0.99899 1.02687 0.82963 1.21094 0.95694 0.98596 0.93773 0.91461 1.22028 0.95157 0.97780 1.00215 1.21759 0.96566 0.92290 0.86147 0.92293 1.23555 0.96493 0.99628 0.98758 1.23719 0.99039 0.99688 0.97399 1.21141 0.85292 0.93626 0.92507 0.94524 1.21933 0.97425 0.98159 0.97329 1.45132 1.05447 1.72650 1.09118 1.19036 0.94541 1.39654 0.84668 0.92394 1.25936 0.98136 0.99086 1.00276 1.70039 1.16622 1.48567 1.20922 0.85318 0.78879 0.77009 0.79437 1.21576 1.21919 1.19694 1.48998 1.19397 1.24512 1.22703 1.23092 1.00565 0.90400 0.95070 1.21874 0.98994 1.06968 1.03598 1.24404 1.00106 0.93570 0.96966 1.77369 1.04393 1.25655 1.09226 0.91844 0.89773 0.89481 0.85715 0.87758 0.75587 0.80412 0.93301 0.94690 0.90364 0.92929 0.86654 0.87481 0.93175 0.93634 0.92297 0.94270 0.78177 0.81450 0.78146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.58 71.98 0.62 -1.77 16 2 C 0.18 3.16 3.05 44.99 0.14 3.30 16 3 H 0.09 1.98 7.95 -2.39 -0.02 1.96 16 4 C -0.14 -2.18 5.50 29.85 0.16 -2.01 16 5 C 0.52 11.00 7.31 87.66 0.64 11.64 16 6 O -0.57 -16.16 13.97 -3.02 -0.04 -16.20 16 7 N -0.71 -14.81 4.39 -463.06 -2.03 -16.84 16 8 C 0.02 0.45 2.66 86.38 0.23 0.68 16 9 C -0.07 -2.31 2.75 -10.70 -0.03 -2.34 16 10 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 11 C -0.11 -3.77 5.27 30.88 0.16 -3.60 16 12 C 0.14 5.41 4.28 45.43 0.19 5.61 16 13 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 14 C -0.15 -4.91 5.79 32.14 0.19 -4.72 16 15 C -0.16 -5.84 5.75 32.14 0.18 -5.65 16 16 C 0.18 8.16 3.12 45.42 0.14 8.30 16 17 H 0.04 1.93 7.66 -2.38 -0.02 1.91 16 18 C -0.11 -4.46 5.18 30.88 0.16 -4.30 16 19 N -0.60 -29.28 2.73 -637.22 -1.74 -31.02 16 20 C -0.25 -13.64 10.28 84.03 0.86 -12.78 16 21 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 22 C -0.04 -2.04 5.43 84.86 0.46 -1.58 16 23 N -0.92 -52.14 10.38 21.65 0.22 -51.91 16 24 Si 0.97 44.66 29.56 68.60 2.03 46.69 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 N -0.37 -6.92 3.52 -327.50 -1.15 -8.08 16 29 C 0.05 0.74 10.59 83.54 0.89 1.62 16 30 C -0.29 -3.89 10.80 21.99 0.24 -3.66 16 31 C 0.03 0.60 12.03 85.24 1.02 1.62 16 32 N -0.35 -7.88 12.58 -57.02 -0.72 -8.60 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.81 7.16 -2.39 -0.02 0.79 16 35 H 0.09 1.67 5.95 -2.38 -0.01 1.65 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 6.59 7.36 -92.71 -0.68 5.91 16 39 H 0.18 5.41 1.13 -108.25 -0.12 5.29 16 40 H 0.05 1.40 7.98 -2.38 -0.02 1.38 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.99 6.76 -2.38 -0.02 1.97 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.12 3.36 4.04 -2.39 -0.01 3.35 16 45 H 0.11 3.51 4.83 -2.39 -0.01 3.49 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 48 H 0.06 2.92 6.67 -2.39 -0.02 2.90 16 49 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.20 1.25 7.27 -2.92 -0.02 1.23 16 51 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -69.31 387.12 2.97 -66.34 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.14 Total: 29.26 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.26 Total: -9.64 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.42 Total: -116.44 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.04 Total: -16.20 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.31 2.97 -66.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716999541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.607 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds