Wall clock time and date at job start Wed Apr 1 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46787 * 2 1 4 4 C 1.52996 * 109.47038 * 240.00348 * 2 1 3 5 5 C 1.50697 * 109.47609 * 64.99915 * 4 2 1 6 6 O 1.21279 * 119.99892 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99820 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99492 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46770 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.43728 * 300.16603 * 9 8 7 11 11 C 1.53788 * 109.95055 * 59.97566 * 9 8 7 12 12 C 1.53699 * 108.29630 * 65.61453 * 11 9 8 13 13 H 1.08993 * 112.10479 * 188.30710 * 12 11 9 14 14 C 1.54608 * 108.36886 * 312.66644 * 12 11 9 15 15 C 1.54310 * 104.75286 * 88.88868 * 14 12 11 16 16 C 1.54997 * 104.71384 * 359.83263 * 15 14 12 17 17 H 1.08997 * 112.26541 * 146.97788 * 16 15 14 18 18 C 1.53148 * 109.43393 * 180.25527 * 9 8 7 19 19 N 1.48297 * 107.27548 * 64.69340 * 12 11 9 20 20 C 1.36937 * 128.20852 * 106.79408 * 19 12 11 21 21 H 1.08001 * 119.99563 * 165.07634 * 20 19 12 22 22 C 1.38808 * 119.99873 * 345.06814 * 20 19 12 23 23 N 1.31622 * 120.00074 * 351.76492 * 22 20 19 24 24 Si 1.86800 * 119.99877 * 171.76142 * 22 20 19 25 25 H 1.48506 * 109.47195 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47409 * 300.00372 * 24 22 20 27 27 H 1.48499 * 109.46874 * 60.00603 * 24 22 20 28 28 N 1.46498 * 109.46987 * 119.99882 * 2 1 3 29 29 C 1.34946 * 126.03887 * 34.99812 * 28 2 1 30 30 C 1.35311 * 107.74710 * 179.97438 * 29 28 2 31 31 C 1.39873 * 107.92043 * 0.02562 * 30 29 28 32 32 N 1.30837 * 108.20160 * 359.73833 * 31 30 29 33 33 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47303 * 300.00477 * 1 2 3 35 35 H 1.09002 * 109.47263 * 60.00152 * 1 2 3 36 36 H 1.09001 * 109.46897 * 304.99485 * 4 2 1 37 37 H 1.09000 * 109.47098 * 185.00337 * 4 2 1 38 38 H 0.96998 * 120.00238 * 0.02562 * 7 5 4 39 39 H 1.09001 * 109.47200 * 60.00486 * 8 7 5 40 40 H 1.08994 * 109.47110 * 299.99457 * 8 7 5 41 41 H 1.08997 * 109.29216 * 306.30695 * 11 9 8 42 42 H 1.09004 * 110.43112 * 185.58742 * 11 9 8 43 43 H 1.09007 * 110.38366 * 207.71080 * 14 12 11 44 44 H 1.08998 * 110.38461 * 330.07250 * 14 12 11 45 45 H 1.09001 * 110.38424 * 118.82124 * 15 14 12 46 46 H 1.08999 * 110.38456 * 241.18237 * 15 14 12 47 47 H 1.09010 * 109.56912 * 174.05332 * 18 9 8 48 48 H 1.08997 * 109.67205 * 53.75087 * 18 9 8 49 49 H 0.97008 * 119.99724 * 179.97438 * 23 22 20 50 50 H 1.07999 * 126.12696 * 0.02562 * 29 28 2 51 51 H 1.07997 * 126.04404 * 180.02562 * 30 29 28 52 52 H 1.08002 * 125.89803 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 1.5964 0.3645 -4.8933 9 6 2.1066 -0.3568 -6.1425 10 1 3.1927 -0.4368 -6.0970 11 6 1.5008 -1.7683 -6.2177 12 6 -0.0162 -1.6320 -6.4239 13 1 -0.5291 -2.5902 -6.3414 14 6 -0.5539 -0.5930 -5.4130 15 6 -0.4309 0.7626 -6.1399 16 6 0.1751 0.4140 -7.5233 17 1 -0.1864 1.0750 -8.3109 18 6 1.7060 0.4379 -7.3890 19 7 -0.2254 -0.9962 -7.7472 20 6 -0.6759 -1.5754 -8.9034 21 1 -1.0084 -0.9563 -9.7235 22 6 -0.7051 -2.9582 -9.0213 23 7 -0.1522 -3.7097 -8.0929 24 14 -1.5290 -3.7524 -10.4977 25 1 -1.4253 -5.2297 -10.3872 26 1 -2.9603 -3.3587 -10.5371 27 1 -0.8568 -3.3004 -11.7423 28 7 2.0183 -0.6906 1.1962 29 6 1.4402 -1.7558 1.7895 30 6 2.1967 -2.0929 2.8596 31 6 3.2738 -1.2027 2.9227 32 7 3.1708 -0.3650 1.9230 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.6054 -1.7197 -1.2951 37 1 3.1263 -0.7994 -1.2056 38 1 2.4877 -1.2162 -3.7908 39 1 2.0311 1.3630 -4.8479 40 1 0.5101 0.4425 -4.9366 41 1 1.6964 -2.2943 -5.2833 42 1 1.9337 -2.3244 -7.0492 43 1 -1.5964 -0.8016 -5.1724 44 1 0.0531 -0.5947 -4.5077 45 1 -1.4129 1.2210 -6.2570 46 1 0.2366 1.4278 -5.5923 47 1 2.1571 -0.0157 -8.2717 48 1 2.0480 1.4683 -7.2928 49 1 -0.1729 -4.6760 -8.1752 50 1 0.5361 -2.2511 1.4675 51 1 2.0031 -2.9055 3.5440 52 1 4.0575 -1.2086 3.6658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716999542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:38 Heat of formation + Delta-G solvation = 160.847252 kcal Electronic energy + Delta-G solvation = -31845.558738 eV Core-core repulsion = 27851.405480 eV Total energy + Delta-G solvation = -3994.153258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.47085 -41.21479 -39.28480 -35.64978 -34.67196 -32.94408 -31.48421 -30.74533 -30.31919 -30.05712 -29.83599 -28.30164 -26.34664 -23.95515 -23.29227 -23.21484 -21.23218 -20.83836 -20.62263 -19.91643 -19.46369 -18.76824 -17.69960 -17.05202 -16.82093 -16.09349 -15.89638 -15.16805 -14.79123 -14.77806 -14.61011 -14.10160 -13.84418 -13.65702 -13.27584 -13.04001 -12.98952 -12.87597 -12.81810 -12.65751 -12.16929 -11.98164 -11.73589 -11.69092 -11.48501 -11.44970 -11.42239 -11.25208 -10.85466 -10.83990 -10.77336 -10.59987 -10.22658 -9.97518 -9.77295 -9.63504 -9.53747 -9.46212 -9.41252 -9.25115 -8.78736 -8.64679 -8.18374 -6.83731 -5.79975 -3.14555 1.72209 2.23769 2.64216 2.68315 3.36119 3.38680 3.41499 3.41963 4.24313 4.42720 4.43933 4.64213 4.74215 4.80741 4.98749 5.15927 5.18922 5.23501 5.26641 5.41954 5.44335 5.44590 5.52631 5.54970 5.57723 5.70956 5.72462 5.78239 5.83365 5.87157 5.99287 6.01755 6.04992 6.12700 6.22344 6.37401 6.43342 6.47400 6.52832 6.58805 6.65883 6.73451 6.79481 6.85529 6.88577 7.02621 7.07124 7.50843 7.53970 7.55098 7.62371 7.72523 8.21099 8.27066 9.10899 9.72859 10.52033 11.32056 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002419 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.261844 B =11573.886800 C =12213.531185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.177 3.823 3 H 0.110 0.890 4 C -0.157 4.157 5 C 0.515 3.485 6 O -0.545 6.545 7 N -0.715 5.715 8 C 0.004 3.996 9 C -0.088 4.088 10 H 0.049 0.951 11 C -0.109 4.109 12 C 0.182 3.818 13 H 0.109 0.891 14 C -0.174 4.174 15 C -0.161 4.161 16 C 0.148 3.852 17 H 0.067 0.933 18 C -0.120 4.120 19 N -0.584 5.584 20 C -0.222 4.222 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.914 5.914 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.365 5.365 29 C 0.057 3.943 30 C -0.279 4.279 31 C 0.040 3.960 32 N -0.299 5.299 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.397 0.603 39 H 0.047 0.953 40 H 0.196 0.804 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.045 0.955 49 H 0.253 0.747 50 H 0.172 0.828 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 3.959 17.132 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.075 3.925 3 H 0.128 0.872 4 C -0.198 4.198 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.366 5.366 8 C -0.115 4.115 9 C -0.107 4.107 10 H 0.067 0.933 11 C -0.148 4.148 12 C 0.075 3.925 13 H 0.126 0.874 14 C -0.212 4.212 15 C -0.199 4.199 16 C 0.040 3.960 17 H 0.085 0.915 18 C -0.161 4.161 19 N -0.305 5.305 20 C -0.350 4.350 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.560 5.560 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.212 1.212 28 N -0.148 5.148 29 C -0.090 4.090 30 C -0.309 4.309 31 C -0.146 4.146 32 N -0.120 5.120 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.231 0.769 39 H 0.065 0.935 40 H 0.211 0.789 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.189 0.811 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.415 5.529 16.312 17.781 hybrid contribution -0.057 -1.781 -0.418 1.830 sum 4.357 3.749 15.895 16.902 Atomic orbital electron populations 1.22340 0.91998 1.03164 1.05178 1.20948 0.95389 0.96836 0.79341 0.87158 1.22094 1.03926 1.00984 0.92792 1.20098 0.79825 0.85634 0.84428 1.90671 1.40411 1.24612 1.86648 1.46329 1.56606 1.27487 1.06149 1.25228 1.10367 0.93297 0.82611 1.21380 0.98357 0.97426 0.93564 0.93250 1.22172 0.99592 0.93038 1.00012 1.21472 0.92199 0.96023 0.82832 0.87350 1.23561 1.00870 0.96560 1.00216 1.23436 1.00735 0.97382 0.98345 1.21637 0.91382 0.88927 0.94071 0.91463 1.22112 0.99145 0.97640 0.97171 1.45173 1.74865 1.03723 1.06743 1.18953 1.34445 0.89598 0.91990 0.90830 1.24814 1.00773 0.96259 0.98388 1.69840 1.47603 1.03997 1.34586 0.86244 0.79342 0.78245 0.82166 1.21683 1.21253 1.21199 1.49000 1.19095 1.24097 1.22559 1.22546 0.99920 0.91131 0.95368 1.21509 0.99481 1.06546 1.03339 1.23882 0.99346 0.94079 0.97246 1.77381 1.02866 1.24025 1.07699 0.92004 0.91736 0.87616 0.88203 0.88289 0.76899 0.93475 0.78903 0.94664 0.90481 0.93136 0.89038 0.92589 0.89293 0.91603 0.93628 0.93732 0.81078 0.83698 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 8.58 37.16 0.32 -1.26 16 2 C 0.18 1.83 3.05 -67.93 -0.21 1.63 16 3 H 0.11 1.31 7.96 -51.93 -0.41 0.89 16 4 C -0.16 -1.54 5.50 -27.89 -0.15 -1.70 16 5 C 0.52 6.49 7.30 -10.99 -0.08 6.41 16 6 O -0.54 -8.33 13.96 5.56 0.08 -8.25 16 7 N -0.72 -9.12 4.39 -60.29 -0.26 -9.38 16 8 C 0.00 0.05 2.68 -4.04 -0.01 0.04 16 9 C -0.09 -1.44 2.75 -90.13 -0.25 -1.69 16 10 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.08 5.28 -25.96 -0.14 -2.21 16 12 C 0.18 3.90 3.11 -65.73 -0.20 3.70 16 13 H 0.11 2.72 6.29 -51.93 -0.33 2.40 16 14 C -0.17 -3.13 5.72 -25.20 -0.14 -3.28 16 15 C -0.16 -2.75 5.74 -24.99 -0.14 -2.89 16 16 C 0.15 2.86 4.34 -65.52 -0.28 2.57 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.12 -2.11 5.37 -26.29 -0.14 -2.25 16 19 N -0.58 -13.67 2.82 -152.53 -0.43 -14.10 16 20 C -0.22 -5.81 10.38 -15.06 -0.16 -5.97 16 21 H 0.07 1.90 7.84 -52.49 -0.41 1.48 16 22 C -0.01 -0.15 5.43 -17.43 -0.09 -0.24 16 23 N -0.91 -24.83 10.53 55.49 0.58 -24.24 16 24 Si 0.91 21.24 29.56 -169.99 -5.03 16.21 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 N -0.37 -3.95 3.53 -54.87 -0.19 -4.14 16 29 C 0.06 0.52 10.59 -17.23 -0.18 0.33 16 30 C -0.28 -2.47 10.80 -40.01 -0.43 -2.90 16 31 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 32 N -0.30 -3.66 12.58 30.63 0.39 -3.28 16 33 H 0.06 0.48 7.16 -51.93 -0.37 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.11 1.18 5.95 -51.93 -0.31 0.87 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.49 7.33 -40.82 -0.30 4.19 16 39 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 40 H 0.20 3.08 1.12 -166.32 -0.19 2.89 16 41 H 0.03 0.60 6.75 -51.93 -0.35 0.24 16 42 H 0.08 1.76 7.99 -51.93 -0.41 1.35 16 43 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.09 1.50 3.93 -51.93 -0.20 1.29 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.39 4.85 -51.93 -0.25 1.14 16 47 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 50 H 0.17 1.09 7.26 -52.49 -0.38 0.71 16 51 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 52 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -30.15 387.47 -9.66 -39.81 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.12 Total: 11.07 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.51 Total: -9.54 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.08 Total: -55.14 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.15 -9.66 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716999542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.653 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds