Wall clock time and date at job start Wed Apr 1 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46787 * 2 1 4 4 C 1.52996 * 109.47038 * 240.00348 * 2 1 3 5 5 C 1.50697 * 109.47609 * 64.99915 * 4 2 1 6 6 O 1.21279 * 119.99892 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99820 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99492 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46770 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.43728 * 300.16603 * 9 8 7 11 11 C 1.53788 * 109.95055 * 59.97566 * 9 8 7 12 12 C 1.53699 * 108.29630 * 65.61453 * 11 9 8 13 13 H 1.08993 * 112.10479 * 188.30710 * 12 11 9 14 14 C 1.54608 * 108.36886 * 312.66644 * 12 11 9 15 15 C 1.54310 * 104.75286 * 88.88868 * 14 12 11 16 16 C 1.54997 * 104.71384 * 359.83263 * 15 14 12 17 17 H 1.08997 * 112.26541 * 146.97788 * 16 15 14 18 18 C 1.53148 * 109.43393 * 180.25527 * 9 8 7 19 19 N 1.48297 * 107.27548 * 64.69340 * 12 11 9 20 20 C 1.36937 * 128.20852 * 106.79408 * 19 12 11 21 21 H 1.08001 * 119.99563 * 165.07634 * 20 19 12 22 22 C 1.38808 * 119.99873 * 345.06814 * 20 19 12 23 23 N 1.31622 * 120.00074 * 351.76492 * 22 20 19 24 24 Si 1.86800 * 119.99877 * 171.76142 * 22 20 19 25 25 H 1.48506 * 109.47195 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47409 * 300.00372 * 24 22 20 27 27 H 1.48499 * 109.46874 * 60.00603 * 24 22 20 28 28 N 1.46498 * 109.46987 * 119.99882 * 2 1 3 29 29 C 1.34946 * 126.03887 * 34.99812 * 28 2 1 30 30 C 1.35311 * 107.74710 * 179.97438 * 29 28 2 31 31 C 1.39873 * 107.92043 * 0.02562 * 30 29 28 32 32 N 1.30837 * 108.20160 * 359.73833 * 31 30 29 33 33 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47303 * 300.00477 * 1 2 3 35 35 H 1.09002 * 109.47263 * 60.00152 * 1 2 3 36 36 H 1.09001 * 109.46897 * 304.99485 * 4 2 1 37 37 H 1.09000 * 109.47098 * 185.00337 * 4 2 1 38 38 H 0.96998 * 120.00238 * 0.02562 * 7 5 4 39 39 H 1.09001 * 109.47200 * 60.00486 * 8 7 5 40 40 H 1.08994 * 109.47110 * 299.99457 * 8 7 5 41 41 H 1.08997 * 109.29216 * 306.30695 * 11 9 8 42 42 H 1.09004 * 110.43112 * 185.58742 * 11 9 8 43 43 H 1.09007 * 110.38366 * 207.71080 * 14 12 11 44 44 H 1.08998 * 110.38461 * 330.07250 * 14 12 11 45 45 H 1.09001 * 110.38424 * 118.82124 * 15 14 12 46 46 H 1.08999 * 110.38456 * 241.18237 * 15 14 12 47 47 H 1.09010 * 109.56912 * 174.05332 * 18 9 8 48 48 H 1.08997 * 109.67205 * 53.75087 * 18 9 8 49 49 H 0.97008 * 119.99724 * 179.97438 * 23 22 20 50 50 H 1.07999 * 126.12696 * 0.02562 * 29 28 2 51 51 H 1.07997 * 126.04404 * 180.02562 * 30 29 28 52 52 H 1.08002 * 125.89803 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0109 1.0870 -2.3633 7 7 1.9845 -0.3919 -3.7002 8 6 1.5964 0.3645 -4.8933 9 6 2.1066 -0.3568 -6.1425 10 1 3.1927 -0.4368 -6.0970 11 6 1.5008 -1.7683 -6.2177 12 6 -0.0162 -1.6320 -6.4239 13 1 -0.5291 -2.5902 -6.3414 14 6 -0.5539 -0.5930 -5.4130 15 6 -0.4309 0.7626 -6.1399 16 6 0.1751 0.4140 -7.5233 17 1 -0.1864 1.0750 -8.3109 18 6 1.7060 0.4379 -7.3890 19 7 -0.2254 -0.9962 -7.7472 20 6 -0.6759 -1.5754 -8.9034 21 1 -1.0084 -0.9563 -9.7235 22 6 -0.7051 -2.9582 -9.0213 23 7 -0.1522 -3.7097 -8.0929 24 14 -1.5290 -3.7524 -10.4977 25 1 -1.4253 -5.2297 -10.3872 26 1 -2.9603 -3.3587 -10.5371 27 1 -0.8568 -3.3004 -11.7423 28 7 2.0183 -0.6906 1.1962 29 6 1.4402 -1.7558 1.7895 30 6 2.1967 -2.0929 2.8596 31 6 3.2738 -1.2027 2.9227 32 7 3.1708 -0.3650 1.9230 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.6054 -1.7197 -1.2951 37 1 3.1263 -0.7994 -1.2056 38 1 2.4877 -1.2162 -3.7908 39 1 2.0311 1.3630 -4.8479 40 1 0.5101 0.4425 -4.9366 41 1 1.6964 -2.2943 -5.2833 42 1 1.9337 -2.3244 -7.0492 43 1 -1.5964 -0.8016 -5.1724 44 1 0.0531 -0.5947 -4.5077 45 1 -1.4129 1.2210 -6.2570 46 1 0.2366 1.4278 -5.5923 47 1 2.1571 -0.0157 -8.2717 48 1 2.0480 1.4683 -7.2928 49 1 -0.1729 -4.6760 -8.1752 50 1 0.5361 -2.2511 1.4675 51 1 2.0031 -2.9055 3.5440 52 1 4.0575 -1.2086 3.6658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716999542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:36 Heat of formation + Delta-G solvation = 143.663652 kcal Electronic energy + Delta-G solvation = -31846.303875 eV Core-core repulsion = 27851.405480 eV Total energy + Delta-G solvation = -3994.898394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.52 seconds Orbital eigenvalues (eV) -42.70273 -42.08893 -40.37775 -36.60422 -35.91150 -34.59756 -32.91390 -32.11048 -31.67039 -31.22126 -30.67404 -29.28156 -27.77397 -25.40541 -24.79158 -24.23158 -22.17999 -21.93172 -21.77065 -21.00023 -20.73845 -20.26813 -18.81812 -18.41681 -17.90341 -17.24091 -16.89539 -16.65159 -16.16345 -15.80652 -15.60606 -15.47065 -14.71439 -14.68776 -14.50103 -14.44129 -14.19349 -14.03950 -13.80249 -13.67193 -13.49997 -13.25259 -13.11223 -13.02991 -12.97910 -12.76391 -12.56808 -12.46305 -12.39868 -12.31662 -12.18704 -11.99785 -11.56932 -11.42035 -11.18936 -11.03342 -10.94388 -10.87185 -10.73137 -10.41543 -10.35525 -9.48665 -9.43393 -8.69622 -7.79986 -5.13817 1.01900 1.47752 1.49008 1.49423 1.54763 1.66205 2.01350 2.39899 2.52567 3.36131 3.48339 3.63028 3.65404 3.85603 3.96189 4.02698 4.03815 4.04798 4.15083 4.20846 4.29229 4.31946 4.43213 4.45469 4.53122 4.56927 4.63642 4.74122 4.77235 4.81634 4.83420 4.86526 4.94749 5.00482 5.01217 5.08313 5.17539 5.19647 5.21223 5.26674 5.31713 5.39994 5.52706 5.56308 5.57026 5.63962 5.81186 5.85165 5.95466 6.18191 6.33031 6.60303 6.83886 7.14798 7.27789 7.80879 8.61674 9.29986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002419 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.261844 B =11573.886800 C =12213.531185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.179 3.821 3 H 0.089 0.911 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.570 6.570 7 N -0.713 5.713 8 C 0.014 3.986 9 C -0.078 4.078 10 H 0.065 0.935 11 C -0.098 4.098 12 C 0.176 3.824 13 H 0.066 0.934 14 C -0.163 4.163 15 C -0.150 4.150 16 C 0.138 3.862 17 H 0.066 0.934 18 C -0.116 4.116 19 N -0.608 5.608 20 C -0.232 4.232 21 H 0.071 0.929 22 C -0.057 4.057 23 N -0.932 5.932 24 Si 0.966 3.034 25 H -0.296 1.296 26 H -0.284 1.284 27 H -0.282 1.282 28 N -0.374 5.374 29 C 0.053 3.947 30 C -0.285 4.285 31 C 0.036 3.964 32 N -0.344 5.344 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.406 0.594 39 H 0.054 0.946 40 H 0.185 0.815 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.042 0.958 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.114 0.886 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.245 0.755 50 H 0.199 0.801 51 H 0.168 0.832 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 4.361 18.832 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.077 3.923 3 H 0.107 0.893 4 C -0.186 4.186 5 C 0.304 3.696 6 O -0.450 6.450 7 N -0.365 5.365 8 C -0.106 4.106 9 C -0.096 4.096 10 H 0.084 0.916 11 C -0.137 4.137 12 C 0.069 3.931 13 H 0.084 0.916 14 C -0.201 4.201 15 C -0.188 4.188 16 C 0.032 3.968 17 H 0.084 0.916 18 C -0.156 4.156 19 N -0.329 5.329 20 C -0.361 4.361 21 H 0.088 0.912 22 C -0.251 4.251 23 N -0.580 5.580 24 Si 0.796 3.204 25 H -0.222 1.222 26 H -0.210 1.210 27 H -0.208 1.208 28 N -0.156 5.156 29 C -0.093 4.093 30 C -0.314 4.314 31 C -0.149 4.149 32 N -0.165 5.165 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.201 0.799 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.132 0.868 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.054 0.946 50 H 0.215 0.785 51 H 0.185 0.815 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.790 5.949 18.028 19.579 hybrid contribution -0.168 -1.885 -0.902 2.097 sum 4.623 4.064 17.125 18.198 Atomic orbital electron populations 1.22259 0.91255 1.04148 1.04353 1.20835 0.95862 0.95894 0.79688 0.89286 1.22015 1.04258 1.01302 0.91065 1.20473 0.78992 0.85306 0.84838 1.90672 1.41521 1.25831 1.87003 1.46231 1.56802 1.27734 1.05691 1.24867 1.09533 0.93631 0.82533 1.21253 0.99077 0.95376 0.93939 0.91636 1.21942 0.97829 0.94753 0.99193 1.21401 0.93430 0.95067 0.83197 0.91587 1.23501 1.00568 0.95919 1.00083 1.23389 1.01410 0.97101 0.96864 1.21879 0.92833 0.86771 0.95348 0.91615 1.22029 0.97429 0.99438 0.96735 1.45382 1.75339 1.05587 1.06631 1.19221 1.33944 0.89987 0.92966 0.91152 1.25468 1.02028 0.96844 1.00775 1.70025 1.48775 1.03422 1.35811 0.85344 0.78432 0.76903 0.79723 1.22206 1.21039 1.20840 1.48996 1.19168 1.24756 1.22726 1.23084 1.00567 0.90462 0.95154 1.21869 0.98999 1.06889 1.03651 1.24411 1.00079 0.93502 0.96926 1.77338 1.04254 1.25752 1.09164 0.90093 0.91644 0.89285 0.86184 0.87829 0.75834 0.92745 0.79936 0.92621 0.94825 0.93957 0.86875 0.92218 0.86832 0.94129 0.90448 0.94580 0.78462 0.81495 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.58 71.98 0.62 -2.13 16 2 C 0.18 3.45 3.05 44.99 0.14 3.59 16 3 H 0.09 2.08 7.96 -2.39 -0.02 2.06 16 4 C -0.15 -2.53 5.50 29.85 0.16 -2.36 16 5 C 0.52 11.80 7.30 87.66 0.64 12.44 16 6 O -0.57 -16.31 13.96 -3.03 -0.04 -16.35 16 7 N -0.71 -16.20 4.39 -463.06 -2.03 -18.23 16 8 C 0.01 0.37 2.68 86.38 0.23 0.61 16 9 C -0.08 -2.39 2.75 -10.48 -0.03 -2.42 16 10 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 11 C -0.10 -3.72 5.28 31.10 0.16 -3.55 16 12 C 0.18 7.63 3.11 45.43 0.14 7.77 16 13 H 0.07 3.44 6.29 -2.39 -0.02 3.42 16 14 C -0.16 -5.69 5.72 31.59 0.18 -5.51 16 15 C -0.15 -4.84 5.74 31.72 0.18 -4.66 16 16 C 0.14 5.25 4.34 45.56 0.20 5.45 16 17 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 18 C -0.12 -3.90 5.37 30.88 0.17 -3.74 16 19 N -0.61 -28.89 2.82 -636.50 -1.79 -30.68 16 20 C -0.23 -12.47 10.38 84.03 0.87 -11.59 16 21 H 0.07 3.71 7.84 -2.91 -0.02 3.68 16 22 C -0.06 -3.10 5.43 84.86 0.46 -2.64 16 23 N -0.93 -52.47 10.53 21.65 0.23 -52.24 16 24 Si 0.97 44.69 29.56 68.60 2.03 46.71 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 N -0.37 -7.45 3.53 -327.51 -1.15 -8.60 16 29 C 0.05 0.83 10.59 83.54 0.88 1.71 16 30 C -0.28 -4.32 10.80 21.99 0.24 -4.08 16 31 C 0.04 0.64 12.03 85.24 1.03 1.67 16 32 N -0.34 -8.05 12.58 -57.02 -0.72 -8.76 16 33 H 0.08 1.03 7.16 -2.39 -0.02 1.01 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.86 5.95 -2.39 -0.01 1.85 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 7.97 7.33 -92.71 -0.68 7.29 16 39 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 40 H 0.19 5.33 1.12 -109.84 -0.12 5.20 16 41 H 0.06 1.83 6.75 -2.39 -0.02 1.82 16 42 H 0.03 1.56 7.99 -2.38 -0.02 1.55 16 43 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.11 3.46 3.93 -2.39 -0.01 3.45 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.11 3.18 4.85 -2.39 -0.01 3.17 16 47 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.24 13.61 8.31 -92.70 -0.77 12.84 16 50 H 0.20 1.81 7.26 -2.91 -0.02 1.79 16 51 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 52 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -67.67 387.47 2.93 -64.74 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.14 Total: 32.87 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 6.27 Total: -9.45 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -5.47 Total: -118.52 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.35 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.67 2.93 -64.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716999542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.404 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds