Wall clock time and date at job start Wed Apr 1 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46808 * 2 1 4 4 N 1.46495 * 109.47326 * 120.00399 * 2 1 3 5 5 C 1.36937 * 120.00175 * 274.99934 * 4 2 1 6 6 H 1.08000 * 119.99899 * 0.27906 * 5 4 2 7 7 C 1.38808 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00132 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47464 * 60.00210 * 9 7 5 11 11 H 1.48502 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47309 * 300.00457 * 9 7 5 13 13 C 1.53001 * 109.47152 * 240.00545 * 2 1 3 14 14 H 1.08998 * 110.88658 * 299.41360 * 13 2 1 15 15 C 1.55157 * 111.00512 * 63.29637 * 13 2 1 16 16 C 1.54322 * 102.94599 * 153.57877 * 15 13 2 17 17 N 1.47030 * 107.26990 * 337.80652 * 16 15 13 18 18 C 1.34768 * 125.65009 * 178.90961 * 17 16 15 19 19 O 1.21636 * 120.00000 * 185.22439 * 18 17 16 20 20 C 1.47161 * 120.00300 * 5.22305 * 18 17 16 21 21 C 1.37194 * 127.04624 * 92.45284 * 20 18 17 22 22 C 1.40093 * 105.88583 * 180.02562 * 21 20 18 23 23 N 1.30107 * 107.72267 * 359.92504 * 22 21 20 24 24 N 1.28830 * 110.78426 * 359.80729 * 23 22 21 25 25 C 1.46498 * 125.15109 * 180.23541 * 24 23 22 26 26 C 1.50858 * 123.21552 * 179.82120 * 22 21 20 27 27 C 1.53400 * 108.18482 * 343.21401 * 26 22 21 28 28 C 1.53025 * 109.88201 * 50.74858 * 27 26 22 29 29 C 1.50384 * 129.91070 * 0.15014 * 21 20 18 30 30 C 1.47471 * 108.71706 * 358.97543 * 17 16 15 31 31 H 1.08996 * 109.46913 * 174.86340 * 1 2 3 32 32 H 1.08997 * 109.46921 * 294.87049 * 1 2 3 33 33 H 1.09002 * 109.46994 * 54.86611 * 1 2 3 34 34 H 0.97004 * 119.99938 * 94.99904 * 4 2 1 35 35 H 0.96999 * 120.00286 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.72016 * 271.94056 * 15 13 2 37 37 H 1.08999 * 110.72172 * 35.03661 * 15 13 2 38 38 H 1.08997 * 109.88792 * 97.22101 * 16 15 13 39 39 H 1.09002 * 109.88782 * 218.39187 * 16 15 13 40 40 H 1.09006 * 109.47229 * 274.97297 * 25 24 23 41 41 H 1.08993 * 109.47131 * 34.97443 * 25 24 23 42 42 H 1.08999 * 109.47124 * 154.97381 * 25 24 23 43 43 H 1.09003 * 109.72217 * 223.53808 * 26 22 21 44 44 H 1.09006 * 109.75783 * 102.90927 * 26 22 21 45 45 H 1.08989 * 109.40013 * 290.61698 * 27 26 22 46 46 H 1.08998 * 109.39905 * 170.87009 * 27 26 22 47 47 H 1.09003 * 109.43586 * 168.51647 * 28 27 26 48 48 H 1.09001 * 109.40391 * 48.62747 * 28 27 26 49 49 H 1.08994 * 109.73742 * 283.24191 * 29 21 20 50 50 H 1.09005 * 109.73294 * 43.93174 * 29 21 20 51 51 H 1.08997 * 110.34980 * 265.25046 * 30 17 16 52 52 H 1.09004 * 110.40463 * 142.92331 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8881 1.0391 2.4254 7 6 2.6114 -0.6622 3.5091 8 7 2.9245 -1.9393 3.4500 9 14 2.7892 0.2694 5.1184 10 1 1.4667 0.8061 5.5285 11 1 3.2983 -0.6491 6.1684 12 1 3.7444 1.3919 4.9377 13 6 2.0400 -0.7211 -1.2493 14 1 1.6980 -1.7559 -1.2675 15 6 1.6117 0.0289 -2.5382 16 6 2.7036 -0.3739 -3.5516 17 7 3.8829 -0.7921 -2.7795 18 6 5.0441 -1.2377 -3.2985 19 8 5.9218 -1.6471 -2.5627 20 6 5.2502 -1.2288 -4.7556 21 6 5.8252 -0.2323 -5.5030 22 6 5.7956 -0.6821 -6.8294 23 7 5.2411 -1.8591 -6.8362 24 7 4.9127 -2.2166 -5.6429 25 6 4.2720 -3.4856 -5.2889 26 6 6.3322 0.1227 -7.9871 27 6 6.4846 1.5785 -7.5283 28 6 7.2666 1.6307 -6.2139 29 6 6.3948 1.0909 -5.0716 30 6 3.5844 -0.6451 -1.3428 31 1 -0.3633 -1.0235 -0.0920 32 1 -0.3633 0.4322 0.9323 33 1 -0.3633 0.5914 -0.8405 34 1 2.2491 -1.6318 1.1524 35 1 3.2478 -2.3966 4.2419 36 1 0.6310 -0.3090 -2.8733 37 1 1.6117 1.1067 -2.3753 38 1 2.3511 -1.2014 -4.1672 39 1 2.9568 0.4784 -4.1823 40 1 3.1927 -3.3944 -5.4114 41 1 4.6461 -4.2756 -5.9400 42 1 4.5004 -3.7310 -4.2517 43 1 5.6361 0.0718 -8.8244 44 1 7.3023 -0.2707 -8.2911 45 1 5.4977 2.0166 -7.3802 46 1 7.0199 2.1442 -8.2908 47 1 7.5474 2.6619 -5.9997 48 1 8.1657 1.0211 -6.3031 49 1 5.5850 1.7904 -4.8647 50 1 7.0028 0.9558 -4.1770 51 1 3.9394 0.3189 -0.9787 52 1 4.0393 -1.4568 -0.7751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724529513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:34 Heat of formation + Delta-G solvation = 43.364201 kcal Electronic energy + Delta-G solvation = -31378.862773 eV Core-core repulsion = 27379.615068 eV Total energy + Delta-G solvation = -3999.247705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.79121 -39.87246 -37.78222 -37.25150 -35.24552 -32.98554 -32.57388 -32.06901 -30.61879 -29.50611 -28.63956 -28.13586 -27.43254 -24.44385 -23.88093 -23.59369 -22.32816 -21.73410 -21.45143 -19.72026 -19.39899 -18.96248 -17.68301 -17.02495 -16.67051 -16.06105 -15.89540 -15.55355 -15.16157 -14.72279 -14.39968 -14.13594 -14.06824 -13.80669 -13.71105 -13.45040 -13.20507 -13.07733 -12.98669 -12.78834 -12.76496 -12.60813 -12.24119 -12.06921 -12.02433 -11.70452 -11.46253 -11.38792 -11.10070 -11.01926 -10.90462 -10.81034 -10.64683 -10.59989 -10.37885 -10.26732 -10.14678 -9.91242 -9.64329 -9.12291 -8.92317 -8.72169 -8.65477 -6.98332 -5.76938 -3.06304 1.57122 1.98628 2.46445 2.63709 3.01369 3.43844 3.48547 3.49549 4.06680 4.22536 4.56099 4.59719 4.61736 4.66169 4.69981 4.81570 4.84059 4.90778 4.94048 5.10627 5.12578 5.25023 5.27684 5.33754 5.36389 5.43082 5.44885 5.52893 5.60260 5.65145 5.71574 5.82498 5.83336 5.83935 5.87210 5.89398 5.99777 6.04909 6.09689 6.11564 6.20750 6.26827 6.34416 6.43422 6.48939 6.58846 6.63989 6.81147 7.03547 7.41425 7.68730 7.94459 8.00173 8.40992 9.52389 10.08530 10.42887 11.45453 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002517 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.838962 B =11121.062974 C =11393.021816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.101 4.101 14 H 0.081 0.919 15 C -0.123 4.123 16 C 0.103 3.897 17 N -0.604 5.604 18 C 0.602 3.398 19 O -0.518 6.518 20 C -0.008 4.008 21 C -0.158 4.158 22 C 0.034 3.966 23 N -0.279 5.279 24 N -0.284 5.284 25 C 0.090 3.910 26 C -0.030 4.030 27 C -0.116 4.116 28 C -0.116 4.116 29 C -0.047 4.047 30 C 0.119 3.881 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.383 0.617 35 H 0.256 0.744 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.076 0.924 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 4.299 -25.012 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.365 5.365 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.161 4.161 16 C -0.020 4.020 17 N -0.338 5.338 18 C 0.386 3.614 19 O -0.392 6.392 20 C -0.135 4.135 21 C -0.169 4.169 22 C -0.126 4.126 23 N -0.108 5.108 24 N -0.072 5.072 25 C -0.050 4.050 26 C -0.069 4.069 27 C -0.154 4.154 28 C -0.153 4.153 29 C -0.086 4.086 30 C -0.002 4.002 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.906 3.106 -25.121 25.384 hybrid contribution 0.208 0.516 1.504 1.603 sum 2.114 3.621 -23.617 23.987 Atomic orbital electron populations 1.22444 0.99057 1.00528 1.00410 1.20147 0.91934 0.95173 0.85266 0.93237 1.42408 1.78191 1.10696 1.05253 1.19144 1.36807 0.93865 0.87273 0.91267 1.24727 1.02078 0.95928 0.98024 1.69642 1.50647 1.08637 1.29031 0.86301 0.77725 0.78657 0.83678 1.21343 1.21743 1.21254 1.22681 0.93643 1.00565 0.95180 0.90034 1.22677 0.97463 1.01488 0.94510 1.22043 0.85753 0.99366 0.94798 1.48550 1.12520 1.63569 1.09186 1.16598 0.81574 0.78258 0.84973 1.90894 1.42088 1.46004 1.60233 1.20902 1.08348 0.92608 0.91665 1.20273 1.06179 0.97822 0.92586 1.21820 1.02968 0.92495 0.95319 1.72777 1.17827 1.16112 1.04131 1.45659 1.44289 1.14765 1.02516 1.22143 0.98250 0.81580 1.03073 1.19986 1.00698 0.92950 0.93234 1.21565 1.01101 0.95342 0.97367 1.21570 0.98453 1.01171 0.94154 1.20007 0.98741 0.91340 0.98462 1.22380 0.95778 1.03341 0.78705 0.93654 0.92537 0.94415 0.78285 0.93443 0.89980 0.90126 0.92122 0.91457 0.89758 0.88441 0.88827 0.90280 0.90249 0.91502 0.91055 0.91230 0.91585 0.90727 0.90687 0.90602 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.22 37.16 0.34 -2.34 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.16 16 3 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -17.12 4.89 -53.43 -0.26 -17.38 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 9 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C -0.10 -1.48 2.63 -88.47 -0.23 -1.71 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.35 5.53 -24.90 -0.14 -1.48 16 16 C 0.10 1.15 6.47 -3.06 -0.02 1.13 16 17 N -0.60 -8.68 3.33 -171.85 -0.57 -9.25 16 18 C 0.60 9.65 6.98 -12.64 -0.09 9.57 16 19 O -0.52 -10.41 17.34 5.25 0.09 -10.32 16 20 C -0.01 -0.12 5.88 -82.31 -0.48 -0.60 16 21 C -0.16 -2.03 6.02 -104.46 -0.63 -2.65 16 22 C 0.03 0.41 7.13 -82.55 -0.59 -0.18 16 23 N -0.28 -3.64 11.89 33.65 0.40 -3.24 16 24 N -0.28 -3.62 3.77 -64.10 -0.24 -3.86 16 25 C 0.09 0.83 11.22 59.85 0.67 1.50 16 26 C -0.03 -0.25 6.31 -27.60 -0.17 -0.42 16 27 C -0.12 -0.81 5.85 -26.51 -0.16 -0.97 16 28 C -0.12 -0.94 5.88 -26.46 -0.16 -1.10 16 29 C -0.05 -0.51 6.22 -27.78 -0.17 -0.68 16 30 C 0.12 1.95 6.19 -2.51 -0.02 1.94 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.50 7.58 -51.93 -0.39 0.10 16 34 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.92 7.67 -51.93 -0.40 0.52 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.48 8.10 -51.94 -0.42 0.06 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 52 H 0.09 1.70 7.99 -51.93 -0.41 1.29 16 LS Contribution 416.04 15.07 6.27 6.27 Total: -1.00 -33.38 416.04 -9.95 -43.33 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -9.08 Total: 6.20 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.25 Total: -1.83 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.05 Total: -60.84 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.38 -9.95 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724529513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.694 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds