Wall clock time and date at job start Wed Apr 1 2020 05:35:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.46808 * 2 1
4 4 N 1.46495 * 109.47326 * 120.00399 * 2 1 3
5 5 C 1.36937 * 120.00175 * 274.99934 * 4 2 1
6 6 H 1.08000 * 119.99899 * 0.27906 * 5 4 2
7 7 C 1.38808 * 120.00191 * 179.97438 * 5 4 2
8 8 N 1.31621 * 120.00132 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 120.00024 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47464 * 60.00210 * 9 7 5
11 11 H 1.48502 * 109.47270 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.47309 * 300.00457 * 9 7 5
13 13 C 1.53001 * 109.47152 * 240.00545 * 2 1 3
14 14 H 1.08998 * 110.88658 * 299.41360 * 13 2 1
15 15 C 1.55157 * 111.00512 * 63.29637 * 13 2 1
16 16 C 1.54322 * 102.94599 * 153.57877 * 15 13 2
17 17 N 1.47030 * 107.26990 * 337.80652 * 16 15 13
18 18 C 1.34768 * 125.65009 * 178.90961 * 17 16 15
19 19 O 1.21636 * 120.00000 * 185.22439 * 18 17 16
20 20 C 1.47161 * 120.00300 * 5.22305 * 18 17 16
21 21 C 1.37194 * 127.04624 * 92.45284 * 20 18 17
22 22 C 1.40093 * 105.88583 * 180.02562 * 21 20 18
23 23 N 1.30107 * 107.72267 * 359.92504 * 22 21 20
24 24 N 1.28830 * 110.78426 * 359.80729 * 23 22 21
25 25 C 1.46498 * 125.15109 * 180.23541 * 24 23 22
26 26 C 1.50858 * 123.21552 * 179.82120 * 22 21 20
27 27 C 1.53400 * 108.18482 * 343.21401 * 26 22 21
28 28 C 1.53025 * 109.88201 * 50.74858 * 27 26 22
29 29 C 1.50384 * 129.91070 * 0.15014 * 21 20 18
30 30 C 1.47471 * 108.71706 * 358.97543 * 17 16 15
31 31 H 1.08996 * 109.46913 * 174.86340 * 1 2 3
32 32 H 1.08997 * 109.46921 * 294.87049 * 1 2 3
33 33 H 1.09002 * 109.46994 * 54.86611 * 1 2 3
34 34 H 0.97004 * 119.99938 * 94.99904 * 4 2 1
35 35 H 0.96999 * 120.00286 * 179.97438 * 8 7 5
36 36 H 1.09006 * 110.72016 * 271.94056 * 15 13 2
37 37 H 1.08999 * 110.72172 * 35.03661 * 15 13 2
38 38 H 1.08997 * 109.88792 * 97.22101 * 16 15 13
39 39 H 1.09002 * 109.88782 * 218.39187 * 16 15 13
40 40 H 1.09006 * 109.47229 * 274.97297 * 25 24 23
41 41 H 1.08993 * 109.47131 * 34.97443 * 25 24 23
42 42 H 1.08999 * 109.47124 * 154.97381 * 25 24 23
43 43 H 1.09003 * 109.72217 * 223.53808 * 26 22 21
44 44 H 1.09006 * 109.75783 * 102.90927 * 26 22 21
45 45 H 1.08989 * 109.40013 * 290.61698 * 27 26 22
46 46 H 1.08998 * 109.39905 * 170.87009 * 27 26 22
47 47 H 1.09003 * 109.43586 * 168.51647 * 28 27 26
48 48 H 1.09001 * 109.40391 * 48.62747 * 28 27 26
49 49 H 1.08994 * 109.73742 * 283.24191 * 29 21 20
50 50 H 1.09005 * 109.73294 * 43.93174 * 29 21 20
51 51 H 1.08997 * 110.34980 * 265.25046 * 30 17 16
52 52 H 1.09004 * 110.40463 * 142.92331 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1492 -0.0076 2.3757
6 1 1.8881 1.0391 2.4254
7 6 2.6114 -0.6622 3.5091
8 7 2.9245 -1.9393 3.4500
9 14 2.7892 0.2694 5.1184
10 1 1.4667 0.8061 5.5285
11 1 3.2983 -0.6491 6.1684
12 1 3.7444 1.3919 4.9377
13 6 2.0400 -0.7211 -1.2493
14 1 1.6980 -1.7559 -1.2675
15 6 1.6117 0.0289 -2.5382
16 6 2.7036 -0.3739 -3.5516
17 7 3.8829 -0.7921 -2.7795
18 6 5.0441 -1.2377 -3.2985
19 8 5.9218 -1.6471 -2.5627
20 6 5.2502 -1.2288 -4.7556
21 6 5.8252 -0.2323 -5.5030
22 6 5.7956 -0.6821 -6.8294
23 7 5.2411 -1.8591 -6.8362
24 7 4.9127 -2.2166 -5.6429
25 6 4.2720 -3.4856 -5.2889
26 6 6.3322 0.1227 -7.9871
27 6 6.4846 1.5785 -7.5283
28 6 7.2666 1.6307 -6.2139
29 6 6.3948 1.0909 -5.0716
30 6 3.5844 -0.6451 -1.3428
31 1 -0.3633 -1.0235 -0.0920
32 1 -0.3633 0.4322 0.9323
33 1 -0.3633 0.5914 -0.8405
34 1 2.2491 -1.6318 1.1524
35 1 3.2478 -2.3966 4.2419
36 1 0.6310 -0.3090 -2.8733
37 1 1.6117 1.1067 -2.3753
38 1 2.3511 -1.2014 -4.1672
39 1 2.9568 0.4784 -4.1823
40 1 3.1927 -3.3944 -5.4114
41 1 4.6461 -4.2756 -5.9400
42 1 4.5004 -3.7310 -4.2517
43 1 5.6361 0.0718 -8.8244
44 1 7.3023 -0.2707 -8.2911
45 1 5.4977 2.0166 -7.3802
46 1 7.0199 2.1442 -8.2908
47 1 7.5474 2.6619 -5.9997
48 1 8.1657 1.0211 -6.3031
49 1 5.5850 1.7904 -4.8647
50 1 7.0028 0.9558 -4.1770
51 1 3.9394 0.3189 -0.9787
52 1 4.0393 -1.4568 -0.7751
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724529513.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:35:33
Heat of formation + Delta-G solvation = 22.772303 kcal
Electronic energy + Delta-G solvation = -31379.755705 eV
Core-core repulsion = 27379.615068 eV
Total energy + Delta-G solvation = -4000.140637 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-43.73628 -41.10981 -39.12600 -37.97769 -36.84257 -34.38029 -33.75563 -33.03461
-32.03396 -30.45230 -30.07724 -29.44536 -28.22597 -25.98951 -25.41381 -24.37906
-23.12480 -22.93681 -22.63910 -21.11327 -20.25469 -19.99076 -19.16711 -18.54766
-17.81167 -17.12212 -17.02405 -16.69709 -16.47742 -15.91909 -15.58916 -15.40126
-15.17584 -15.03529 -14.72779 -14.55565 -14.38952 -14.11092 -14.02080 -13.84355
-13.73716 -13.64391 -13.48485 -13.37706 -13.12845 -12.88879 -12.73540 -12.69278
-12.40003 -12.27248 -12.25552 -12.04762 -11.81739 -11.71132 -11.65486 -11.55097
-11.45886 -11.33149 -11.18331 -10.91894 -10.09491 -9.89715 -9.62961 -8.97926
-7.91671 -5.18941 0.55402 0.89701 1.46810 1.49275 1.49516 1.54998
1.57367 1.92419 2.57292 3.14133 3.26920 3.42294 3.54985 3.63340
3.81408 3.89906 4.00780 4.03129 4.10117 4.15483 4.16299 4.20891
4.32452 4.35296 4.44741 4.51496 4.52946 4.60578 4.61717 4.64630
4.65759 4.69006 4.82049 4.85699 4.92187 4.98672 5.02360 5.06592
5.10191 5.15500 5.19281 5.23485 5.28149 5.30667 5.40984 5.49925
5.54726 5.56352 5.65864 5.75212 6.22095 6.30570 6.74566 7.00492
7.36668 8.14517 8.35152 9.31755
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.015808 B = 0.002517 C = 0.002457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1770.838962 B =11121.062974 C =11393.021816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.180 3.820
3 H 0.048 0.952
4 N -0.738 5.738
5 C -0.231 4.231
6 H 0.077 0.923
7 C -0.079 4.079
8 N -0.971 5.971
9 Si 0.966 3.034
10 H -0.276 1.276
11 H -0.301 1.301
12 H -0.280 1.280
13 C -0.090 4.090
14 H 0.079 0.921
15 C -0.108 4.108
16 C 0.102 3.898
17 N -0.598 5.598
18 C 0.604 3.396
19 O -0.573 6.573
20 C -0.030 4.030
21 C -0.164 4.164
22 C 0.031 3.969
23 N -0.289 5.289
24 N -0.286 5.286
25 C 0.083 3.917
26 C -0.031 4.031
27 C -0.109 4.109
28 C -0.113 4.113
29 C -0.050 4.050
30 C 0.123 3.877
31 H 0.043 0.957
32 H 0.032 0.968
33 H 0.080 0.920
34 H 0.370 0.630
35 H 0.248 0.752
36 H 0.113 0.887
37 H 0.093 0.907
38 H 0.078 0.922
39 H 0.083 0.917
40 H 0.107 0.893
41 H 0.114 0.886
42 H 0.080 0.920
43 H 0.093 0.907
44 H 0.087 0.913
45 H 0.068 0.932
46 H 0.097 0.903
47 H 0.086 0.914
48 H 0.059 0.941
49 H 0.083 0.917
50 H 0.052 0.948
51 H 0.062 0.938
52 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.166 6.393 -28.138 28.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.071 3.929
3 H 0.066 0.934
4 N -0.377 5.377
5 C -0.363 4.363
6 H 0.095 0.905
7 C -0.270 4.270
8 N -0.623 5.623
9 Si 0.796 3.204
10 H -0.203 1.203
11 H -0.227 1.227
12 H -0.207 1.207
13 C -0.110 4.110
14 H 0.097 0.903
15 C -0.146 4.146
16 C -0.019 4.019
17 N -0.330 5.330
18 C 0.390 3.610
19 O -0.452 6.452
20 C -0.157 4.157
21 C -0.174 4.174
22 C -0.129 4.129
23 N -0.119 5.119
24 N -0.075 5.075
25 C -0.057 4.057
26 C -0.069 4.069
27 C -0.147 4.147
28 C -0.150 4.150
29 C -0.089 4.089
30 C 0.001 3.999
31 H 0.063 0.937
32 H 0.052 0.948
33 H 0.099 0.901
34 H 0.201 0.799
35 H 0.057 0.943
36 H 0.132 0.868
37 H 0.111 0.889
38 H 0.096 0.904
39 H 0.101 0.899
40 H 0.126 0.874
41 H 0.133 0.867
42 H 0.099 0.901
43 H 0.111 0.889
44 H 0.106 0.894
45 H 0.087 0.913
46 H 0.115 0.885
47 H 0.105 0.895
48 H 0.078 0.922
49 H 0.101 0.899
50 H 0.071 0.929
51 H 0.080 0.920
52 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 0.274 5.253 -28.308 28.792
hybrid contribution 0.689 -0.113 2.393 2.492
sum 0.963 5.140 -25.915 26.438
Atomic orbital electron populations
1.22276 0.96873 1.01135 1.01023 1.20411 0.93235 0.94793 0.84421
0.93385 1.42644 1.78489 1.10243 1.06370 1.19550 1.34286 0.94176
0.88242 0.90524 1.25492 1.03405 0.96791 1.01358 1.69808 1.52932
1.10242 1.29276 0.85310 0.77954 0.77298 0.79831 1.20254 1.22717
1.20655 1.22490 0.91883 1.00772 0.95843 0.90273 1.22702 0.98677
1.01722 0.91523 1.22289 0.84224 1.00651 0.94773 1.48566 1.13153
1.62637 1.08617 1.16893 0.81140 0.77244 0.85720 1.90855 1.43996
1.48564 1.61752 1.20694 1.10318 0.94096 0.90562 1.20635 1.05492
0.98288 0.93025 1.22430 1.02240 0.92225 0.96036 1.72782 1.18295
1.16680 1.04102 1.45933 1.44227 1.15148 1.02147 1.22379 0.99587
0.80995 1.02713 1.20184 1.01206 0.93209 0.92330 1.21560 1.01356
0.94673 0.97141 1.21580 0.97786 1.01830 0.93826 1.20098 0.99121
0.90891 0.98755 1.22141 0.97114 1.00885 0.79746 0.93740 0.94840
0.90130 0.79864 0.94340 0.86842 0.88859 0.90350 0.89866 0.87418
0.86747 0.90121 0.88873 0.89441 0.91290 0.88460 0.89500 0.92171
0.89857 0.92944 0.91951 0.93576
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.66 9.22 71.98 0.66 -3.99 16
2 C 0.18 6.30 2.40 44.99 0.11 6.41 16
3 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16
4 N -0.74 -35.60 4.89 -322.95 -1.58 -37.18 16
5 C -0.23 -12.51 9.93 84.03 0.83 -11.67 16
6 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16
7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
8 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16
9 Si 0.97 46.55 29.55 68.60 2.03 48.58 16
10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
11 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16
12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16
13 C -0.09 -2.56 2.63 -9.40 -0.02 -2.58 16
14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
15 C -0.11 -1.98 5.53 31.78 0.18 -1.80 16
16 C 0.10 2.01 6.47 86.73 0.56 2.57 16
17 N -0.60 -17.28 3.33 -815.84 -2.71 -19.99 16
18 C 0.60 20.16 6.98 86.59 0.60 20.76 16
19 O -0.57 -24.78 17.34 -4.15 -0.07 -24.85 16
20 C -0.03 -0.84 5.88 40.43 0.24 -0.60 16
21 C -0.16 -4.08 6.02 -19.76 -0.12 -4.20 16
22 C 0.03 0.68 7.13 43.31 0.31 0.99 16
23 N -0.29 -7.11 11.89 -47.46 -0.56 -7.68 16
24 N -0.29 -7.06 3.77 -356.72 -1.34 -8.41 16
25 C 0.08 1.46 11.22 127.77 1.43 2.90 16
26 C -0.03 -0.43 6.31 30.03 0.19 -0.24 16
27 C -0.11 -1.19 5.85 30.74 0.18 -1.01 16
28 C -0.11 -1.61 5.88 30.77 0.18 -1.43 16
29 C -0.05 -1.05 6.22 29.92 0.19 -0.87 16
30 C 0.12 4.21 6.19 86.84 0.54 4.75 16
31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
33 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16
34 H 0.37 19.68 7.80 -92.71 -0.72 18.95 16
35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16
36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16
37 H 0.09 1.55 8.04 -2.39 -0.02 1.53 16
38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
40 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16
41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
42 H 0.08 1.63 7.67 -2.39 -0.02 1.61 16
43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16
45 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16
46 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16
47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
48 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16
49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
50 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16
51 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16
52 H 0.05 1.95 7.99 -2.38 -0.02 1.93 16
Total: -1.00 -76.73 416.04 2.74 -73.99
By element:
Atomic # 1 Polarization: 29.38 SS G_CDS: 0.18 Total: 29.56 kcal
Atomic # 6 Polarization: -0.60 SS G_CDS: 6.53 Total: 5.93 kcal
Atomic # 7 Polarization: -127.29 SS G_CDS: -5.92 Total: -133.21 kcal
Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.85 kcal
Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal
Total: -76.73 2.74 -73.99 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724529513.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.760 kcal
(2) G-P(sol) polarization free energy of solvation -76.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds