Wall clock time and date at job start Wed Apr 1 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46808 * 2 1 4 4 N 1.46495 * 109.47326 * 120.00399 * 2 1 3 5 5 C 1.36937 * 120.00175 * 274.99934 * 4 2 1 6 6 H 1.08000 * 119.99899 * 0.27906 * 5 4 2 7 7 C 1.38808 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00132 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47464 * 60.00210 * 9 7 5 11 11 H 1.48502 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47309 * 300.00457 * 9 7 5 13 13 C 1.53001 * 109.47152 * 240.00545 * 2 1 3 14 14 H 1.08998 * 110.88658 * 299.41360 * 13 2 1 15 15 C 1.55157 * 111.00512 * 63.29637 * 13 2 1 16 16 C 1.54322 * 102.94599 * 153.57877 * 15 13 2 17 17 N 1.47030 * 107.26990 * 337.80652 * 16 15 13 18 18 C 1.34768 * 125.65009 * 178.90961 * 17 16 15 19 19 O 1.21636 * 120.00000 * 185.22439 * 18 17 16 20 20 C 1.47161 * 120.00300 * 5.22305 * 18 17 16 21 21 C 1.37194 * 127.04624 * 92.45284 * 20 18 17 22 22 C 1.40093 * 105.88583 * 180.02562 * 21 20 18 23 23 N 1.30107 * 107.72267 * 359.92504 * 22 21 20 24 24 N 1.28830 * 110.78426 * 359.80729 * 23 22 21 25 25 C 1.46498 * 125.15109 * 180.23541 * 24 23 22 26 26 C 1.50858 * 123.21552 * 179.82120 * 22 21 20 27 27 C 1.53400 * 108.18482 * 343.21401 * 26 22 21 28 28 C 1.53025 * 109.88201 * 50.74858 * 27 26 22 29 29 C 1.50384 * 129.91070 * 0.15014 * 21 20 18 30 30 C 1.47471 * 108.71706 * 358.97543 * 17 16 15 31 31 H 1.08996 * 109.46913 * 174.86340 * 1 2 3 32 32 H 1.08997 * 109.46921 * 294.87049 * 1 2 3 33 33 H 1.09002 * 109.46994 * 54.86611 * 1 2 3 34 34 H 0.97004 * 119.99938 * 94.99904 * 4 2 1 35 35 H 0.96999 * 120.00286 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.72016 * 271.94056 * 15 13 2 37 37 H 1.08999 * 110.72172 * 35.03661 * 15 13 2 38 38 H 1.08997 * 109.88792 * 97.22101 * 16 15 13 39 39 H 1.09002 * 109.88782 * 218.39187 * 16 15 13 40 40 H 1.09006 * 109.47229 * 274.97297 * 25 24 23 41 41 H 1.08993 * 109.47131 * 34.97443 * 25 24 23 42 42 H 1.08999 * 109.47124 * 154.97381 * 25 24 23 43 43 H 1.09003 * 109.72217 * 223.53808 * 26 22 21 44 44 H 1.09006 * 109.75783 * 102.90927 * 26 22 21 45 45 H 1.08989 * 109.40013 * 290.61698 * 27 26 22 46 46 H 1.08998 * 109.39905 * 170.87009 * 27 26 22 47 47 H 1.09003 * 109.43586 * 168.51647 * 28 27 26 48 48 H 1.09001 * 109.40391 * 48.62747 * 28 27 26 49 49 H 1.08994 * 109.73742 * 283.24191 * 29 21 20 50 50 H 1.09005 * 109.73294 * 43.93174 * 29 21 20 51 51 H 1.08997 * 110.34980 * 265.25046 * 30 17 16 52 52 H 1.09004 * 110.40463 * 142.92331 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8881 1.0391 2.4254 7 6 2.6114 -0.6622 3.5091 8 7 2.9245 -1.9393 3.4500 9 14 2.7892 0.2694 5.1184 10 1 1.4667 0.8061 5.5285 11 1 3.2983 -0.6491 6.1684 12 1 3.7444 1.3919 4.9377 13 6 2.0400 -0.7211 -1.2493 14 1 1.6980 -1.7559 -1.2675 15 6 1.6117 0.0289 -2.5382 16 6 2.7036 -0.3739 -3.5516 17 7 3.8829 -0.7921 -2.7795 18 6 5.0441 -1.2377 -3.2985 19 8 5.9218 -1.6471 -2.5627 20 6 5.2502 -1.2288 -4.7556 21 6 5.8252 -0.2323 -5.5030 22 6 5.7956 -0.6821 -6.8294 23 7 5.2411 -1.8591 -6.8362 24 7 4.9127 -2.2166 -5.6429 25 6 4.2720 -3.4856 -5.2889 26 6 6.3322 0.1227 -7.9871 27 6 6.4846 1.5785 -7.5283 28 6 7.2666 1.6307 -6.2139 29 6 6.3948 1.0909 -5.0716 30 6 3.5844 -0.6451 -1.3428 31 1 -0.3633 -1.0235 -0.0920 32 1 -0.3633 0.4322 0.9323 33 1 -0.3633 0.5914 -0.8405 34 1 2.2491 -1.6318 1.1524 35 1 3.2478 -2.3966 4.2419 36 1 0.6310 -0.3090 -2.8733 37 1 1.6117 1.1067 -2.3753 38 1 2.3511 -1.2014 -4.1672 39 1 2.9568 0.4784 -4.1823 40 1 3.1927 -3.3944 -5.4114 41 1 4.6461 -4.2756 -5.9400 42 1 4.5004 -3.7310 -4.2517 43 1 5.6361 0.0718 -8.8244 44 1 7.3023 -0.2707 -8.2911 45 1 5.4977 2.0166 -7.3802 46 1 7.0199 2.1442 -8.2908 47 1 7.5474 2.6619 -5.9997 48 1 8.1657 1.0211 -6.3031 49 1 5.5850 1.7904 -4.8647 50 1 7.0028 0.9558 -4.1770 51 1 3.9394 0.3189 -0.9787 52 1 4.0393 -1.4568 -0.7751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724529513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:33 Heat of formation + Delta-G solvation = 22.772303 kcal Electronic energy + Delta-G solvation = -31379.755705 eV Core-core repulsion = 27379.615068 eV Total energy + Delta-G solvation = -4000.140637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.73628 -41.10981 -39.12600 -37.97769 -36.84257 -34.38029 -33.75563 -33.03461 -32.03396 -30.45230 -30.07724 -29.44536 -28.22597 -25.98951 -25.41381 -24.37906 -23.12480 -22.93681 -22.63910 -21.11327 -20.25469 -19.99076 -19.16711 -18.54766 -17.81167 -17.12212 -17.02405 -16.69709 -16.47742 -15.91909 -15.58916 -15.40126 -15.17584 -15.03529 -14.72779 -14.55565 -14.38952 -14.11092 -14.02080 -13.84355 -13.73716 -13.64391 -13.48485 -13.37706 -13.12845 -12.88879 -12.73540 -12.69278 -12.40003 -12.27248 -12.25552 -12.04762 -11.81739 -11.71132 -11.65486 -11.55097 -11.45886 -11.33149 -11.18331 -10.91894 -10.09491 -9.89715 -9.62961 -8.97926 -7.91671 -5.18941 0.55402 0.89701 1.46810 1.49275 1.49516 1.54998 1.57367 1.92419 2.57292 3.14133 3.26920 3.42294 3.54985 3.63340 3.81408 3.89906 4.00780 4.03129 4.10117 4.15483 4.16299 4.20891 4.32452 4.35296 4.44741 4.51496 4.52946 4.60578 4.61717 4.64630 4.65759 4.69006 4.82049 4.85699 4.92187 4.98672 5.02360 5.06592 5.10191 5.15500 5.19281 5.23485 5.28149 5.30667 5.40984 5.49925 5.54726 5.56352 5.65864 5.75212 6.22095 6.30570 6.74566 7.00492 7.36668 8.14517 8.35152 9.31755 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002517 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.838962 B =11121.062974 C =11393.021816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.280 1.280 13 C -0.090 4.090 14 H 0.079 0.921 15 C -0.108 4.108 16 C 0.102 3.898 17 N -0.598 5.598 18 C 0.604 3.396 19 O -0.573 6.573 20 C -0.030 4.030 21 C -0.164 4.164 22 C 0.031 3.969 23 N -0.289 5.289 24 N -0.286 5.286 25 C 0.083 3.917 26 C -0.031 4.031 27 C -0.109 4.109 28 C -0.113 4.113 29 C -0.050 4.050 30 C 0.123 3.877 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.062 0.938 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 6.393 -28.138 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.066 0.934 4 N -0.377 5.377 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.623 5.623 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.110 4.110 14 H 0.097 0.903 15 C -0.146 4.146 16 C -0.019 4.019 17 N -0.330 5.330 18 C 0.390 3.610 19 O -0.452 6.452 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.129 4.129 23 N -0.119 5.119 24 N -0.075 5.075 25 C -0.057 4.057 26 C -0.069 4.069 27 C -0.147 4.147 28 C -0.150 4.150 29 C -0.089 4.089 30 C 0.001 3.999 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.274 5.253 -28.308 28.792 hybrid contribution 0.689 -0.113 2.393 2.492 sum 0.963 5.140 -25.915 26.438 Atomic orbital electron populations 1.22276 0.96873 1.01135 1.01023 1.20411 0.93235 0.94793 0.84421 0.93385 1.42644 1.78489 1.10243 1.06370 1.19550 1.34286 0.94176 0.88242 0.90524 1.25492 1.03405 0.96791 1.01358 1.69808 1.52932 1.10242 1.29276 0.85310 0.77954 0.77298 0.79831 1.20254 1.22717 1.20655 1.22490 0.91883 1.00772 0.95843 0.90273 1.22702 0.98677 1.01722 0.91523 1.22289 0.84224 1.00651 0.94773 1.48566 1.13153 1.62637 1.08617 1.16893 0.81140 0.77244 0.85720 1.90855 1.43996 1.48564 1.61752 1.20694 1.10318 0.94096 0.90562 1.20635 1.05492 0.98288 0.93025 1.22430 1.02240 0.92225 0.96036 1.72782 1.18295 1.16680 1.04102 1.45933 1.44227 1.15148 1.02147 1.22379 0.99587 0.80995 1.02713 1.20184 1.01206 0.93209 0.92330 1.21560 1.01356 0.94673 0.97141 1.21580 0.97786 1.01830 0.93826 1.20098 0.99121 0.90891 0.98755 1.22141 0.97114 1.00885 0.79746 0.93740 0.94840 0.90130 0.79864 0.94340 0.86842 0.88859 0.90350 0.89866 0.87418 0.86747 0.90121 0.88873 0.89441 0.91290 0.88460 0.89500 0.92171 0.89857 0.92944 0.91951 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.22 71.98 0.66 -3.99 16 2 C 0.18 6.30 2.40 44.99 0.11 6.41 16 3 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 4 N -0.74 -35.60 4.89 -322.95 -1.58 -37.18 16 5 C -0.23 -12.51 9.93 84.03 0.83 -11.67 16 6 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 8 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 9 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C -0.09 -2.56 2.63 -9.40 -0.02 -2.58 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -1.98 5.53 31.78 0.18 -1.80 16 16 C 0.10 2.01 6.47 86.73 0.56 2.57 16 17 N -0.60 -17.28 3.33 -815.84 -2.71 -19.99 16 18 C 0.60 20.16 6.98 86.59 0.60 20.76 16 19 O -0.57 -24.78 17.34 -4.15 -0.07 -24.85 16 20 C -0.03 -0.84 5.88 40.43 0.24 -0.60 16 21 C -0.16 -4.08 6.02 -19.76 -0.12 -4.20 16 22 C 0.03 0.68 7.13 43.31 0.31 0.99 16 23 N -0.29 -7.11 11.89 -47.46 -0.56 -7.68 16 24 N -0.29 -7.06 3.77 -356.72 -1.34 -8.41 16 25 C 0.08 1.46 11.22 127.77 1.43 2.90 16 26 C -0.03 -0.43 6.31 30.03 0.19 -0.24 16 27 C -0.11 -1.19 5.85 30.74 0.18 -1.01 16 28 C -0.11 -1.61 5.88 30.77 0.18 -1.43 16 29 C -0.05 -1.05 6.22 29.92 0.19 -0.87 16 30 C 0.12 4.21 6.19 86.84 0.54 4.75 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 34 H 0.37 19.68 7.80 -92.71 -0.72 18.95 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.09 1.55 8.04 -2.39 -0.02 1.53 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.63 7.67 -2.39 -0.02 1.61 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 46 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 51 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 52 H 0.05 1.95 7.99 -2.38 -0.02 1.93 16 Total: -1.00 -76.73 416.04 2.74 -73.99 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.18 Total: 29.56 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.53 Total: 5.93 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -5.92 Total: -133.21 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.85 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.73 2.74 -73.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724529513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.760 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds