Wall clock time and date at job start Wed Apr 1 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47052 * 2 1 4 4 N 1.46500 * 109.47277 * 240.00261 * 2 1 3 5 5 C 1.36934 * 119.99846 * 84.99650 * 4 2 1 6 6 H 1.08003 * 120.00206 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99695 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00208 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00114 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46740 * 89.99937 * 9 7 5 11 11 H 1.48493 * 109.47178 * 209.99732 * 9 7 5 12 12 H 1.48501 * 109.47085 * 329.99983 * 9 7 5 13 13 C 1.52994 * 109.47531 * 119.99836 * 2 1 3 14 14 H 1.09002 * 110.88789 * 60.62387 * 13 2 1 15 15 C 1.55157 * 111.00375 * 296.74969 * 13 2 1 16 16 C 1.54324 * 102.94177 * 206.38330 * 15 13 2 17 17 N 1.47021 * 107.27462 * 22.19171 * 16 15 13 18 18 C 1.34772 * 125.65396 * 181.02053 * 17 16 15 19 19 O 1.21632 * 120.00359 * 184.91261 * 18 17 16 20 20 C 1.47168 * 119.99860 * 4.92025 * 18 17 16 21 21 C 1.37200 * 127.04344 * 96.26007 * 20 18 17 22 22 C 1.40149 * 105.86422 * 180.09735 * 21 20 18 23 23 N 1.30053 * 107.72429 * 359.93117 * 22 21 20 24 24 N 1.28824 * 110.79983 * 0.05016 * 23 22 21 25 25 C 1.46497 * 125.15225 * 180.02562 * 24 23 22 26 26 C 1.50870 * 123.16741 * 179.78657 * 22 21 20 27 27 C 1.53388 * 108.21889 * 343.22661 * 26 22 21 28 28 C 1.53031 * 109.88909 * 50.73878 * 27 26 22 29 29 C 1.50386 * 129.91525 * 0.18402 * 21 20 18 30 30 C 1.47432 * 108.69796 * 1.28564 * 17 16 15 31 31 H 1.08998 * 109.46952 * 297.22319 * 1 2 3 32 32 H 1.08995 * 109.47302 * 57.22340 * 1 2 3 33 33 H 1.09000 * 109.46803 * 177.23046 * 1 2 3 34 34 H 0.96997 * 119.99915 * 264.99749 * 4 2 1 35 35 H 0.97001 * 120.00263 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72223 * 88.02180 * 15 13 2 37 37 H 1.09002 * 110.87525 * 324.81229 * 15 13 2 38 38 H 1.09006 * 109.88655 * 262.77593 * 16 15 13 39 39 H 1.09004 * 110.01580 * 141.68584 * 16 15 13 40 40 H 1.09005 * 109.47091 * 274.44826 * 25 24 23 41 41 H 1.09000 * 109.47109 * 34.44408 * 25 24 23 42 42 H 1.09001 * 109.47599 * 154.44548 * 25 24 23 43 43 H 1.09004 * 109.72117 * 223.53388 * 26 22 21 44 44 H 1.08997 * 109.71565 * 102.92302 * 26 22 21 45 45 H 1.08999 * 109.40143 * 170.86715 * 27 26 22 46 46 H 1.09000 * 109.40491 * 290.61099 * 27 26 22 47 47 H 1.09003 * 109.43310 * 48.65913 * 28 27 26 48 48 H 1.08992 * 109.43671 * 168.57174 * 28 27 26 49 49 H 1.09001 * 109.73078 * 43.96539 * 29 21 20 50 50 H 1.08998 * 109.73281 * 283.27881 * 29 21 20 51 51 H 1.08998 * 110.36363 * 94.48373 * 30 17 16 52 52 H 1.09002 * 110.36613 * 216.80098 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8918 1.0404 -2.4243 7 6 2.6113 -0.6618 -3.5092 8 7 2.9244 -1.9388 -3.4502 9 14 2.7890 0.2699 -5.1186 10 1 4.1512 0.8550 -5.2039 11 1 2.5782 -0.6616 -6.2557 12 1 1.7789 1.3570 -5.1753 13 6 2.0401 -0.7212 1.2492 14 1 1.6987 -1.7562 1.2670 15 6 1.6108 0.0282 2.5382 16 6 2.7022 -0.3750 3.5521 17 7 3.8819 -0.7928 2.7805 18 6 5.0433 -1.2372 3.3001 19 8 5.9865 -1.4720 2.5688 20 6 5.1704 -1.4386 4.7524 21 6 5.0119 -2.6148 5.4407 22 6 5.2288 -2.3017 6.7894 23 7 5.4948 -1.0308 6.8630 24 7 5.4704 -0.4899 5.6941 25 6 5.7255 0.9253 5.4140 26 6 5.1448 -3.3221 7.8975 27 6 4.4000 -4.5514 7.3620 28 6 5.0226 -5.0016 6.0385 29 6 4.6788 -3.9914 4.9351 30 6 3.5862 -0.6390 1.3444 31 1 -0.3633 0.4701 0.9138 32 1 -0.3633 0.5563 -0.8640 33 1 -0.3633 -1.0265 -0.0497 34 1 2.2491 -1.6317 -1.1526 35 1 3.2478 -2.3961 -4.2422 36 1 0.6300 -0.3100 2.8725 37 1 1.6118 1.1066 2.3791 38 1 2.3493 -1.2030 4.1670 39 1 2.9555 0.4752 4.1854 40 1 4.8026 1.4921 5.5369 41 1 6.4785 1.3026 6.1060 42 1 6.0853 1.0341 4.3908 43 1 4.6008 -2.9022 8.7437 44 1 6.1488 -3.6079 8.2111 45 1 4.4686 -5.3612 8.0883 46 1 3.3520 -4.2985 7.2015 47 1 6.1053 -5.0630 6.1493 48 1 4.6296 -5.9814 5.7675 49 1 5.2657 -4.2076 4.0424 50 1 3.6159 -4.0500 4.7005 51 1 3.9398 0.3277 0.9858 52 1 4.0445 -1.4469 0.7740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724529514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:38 Heat of formation + Delta-G solvation = 43.522458 kcal Electronic energy + Delta-G solvation = -31405.435897 eV Core-core repulsion = 27406.195055 eV Total energy + Delta-G solvation = -3999.240843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.79202 -39.87189 -37.78075 -37.23599 -35.24568 -33.00143 -32.55595 -32.06415 -30.62081 -29.50263 -28.63192 -28.13085 -27.43815 -24.44065 -23.88151 -23.59070 -22.31296 -21.74279 -21.45235 -19.71352 -19.39780 -18.94139 -17.67855 -16.98994 -16.59149 -16.30952 -15.96600 -15.41508 -15.07720 -14.71886 -14.39788 -14.07088 -14.00450 -13.92803 -13.70302 -13.48177 -13.20604 -13.09361 -12.98741 -12.81195 -12.73028 -12.59775 -12.23449 -12.08751 -12.01429 -11.68316 -11.46427 -11.38167 -11.07469 -10.99515 -10.90802 -10.81936 -10.65824 -10.59723 -10.36415 -10.24488 -10.14418 -9.89780 -9.64490 -9.12511 -8.92847 -8.71290 -8.66251 -6.98118 -5.76888 -3.06225 1.56243 1.99639 2.47220 2.62321 3.01620 3.43347 3.48279 3.50156 4.06461 4.22761 4.55685 4.60623 4.61320 4.68335 4.69535 4.78379 4.84022 4.89577 4.95453 5.08978 5.12641 5.27169 5.29398 5.35534 5.37930 5.40468 5.45305 5.53323 5.59983 5.67535 5.73584 5.83234 5.83890 5.85090 5.87709 5.91708 5.99049 6.07460 6.11270 6.12364 6.20206 6.26779 6.34974 6.44199 6.49721 6.58658 6.63905 6.81134 7.03467 7.41227 7.69053 7.94118 8.00358 8.40951 9.52498 10.08687 10.43091 11.45525 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002528 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.485846 B =11071.896962 C =11276.847944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.100 4.100 14 H 0.083 0.917 15 C -0.123 4.123 16 C 0.103 3.897 17 N -0.605 5.605 18 C 0.602 3.398 19 O -0.517 6.517 20 C -0.009 4.009 21 C -0.155 4.155 22 C 0.035 3.965 23 N -0.279 5.279 24 N -0.286 5.286 25 C 0.091 3.909 26 C -0.030 4.030 27 C -0.116 4.116 28 C -0.116 4.116 29 C -0.048 4.048 30 C 0.120 3.880 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 0.093 24.948 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.120 4.120 14 H 0.101 0.899 15 C -0.161 4.161 16 C -0.020 4.020 17 N -0.339 5.339 18 C 0.386 3.614 19 O -0.391 6.391 20 C -0.136 4.136 21 C -0.166 4.166 22 C -0.126 4.126 23 N -0.108 5.108 24 N -0.074 5.074 25 C -0.050 4.050 26 C -0.069 4.069 27 C -0.154 4.154 28 C -0.153 4.153 29 C -0.086 4.086 30 C -0.001 4.001 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.147 1.112 25.118 25.168 hybrid contribution -0.017 -0.208 -1.532 1.546 sum 1.130 0.904 23.586 23.630 Atomic orbital electron populations 1.22444 0.99037 1.01122 0.99815 1.20145 0.91952 0.95112 0.85303 0.93319 1.42416 1.78172 1.10717 1.05257 1.19183 1.36782 0.93801 0.87273 0.91251 1.24728 1.02094 0.95930 0.98019 1.69651 1.50667 1.08621 1.28930 0.86234 0.77776 0.78601 0.83822 1.21735 1.21818 1.20833 1.22717 0.93573 1.00692 0.95066 0.89859 1.22678 0.97541 1.01333 0.94578 1.22056 0.85909 0.99240 0.94813 1.48558 1.12954 1.63142 1.09228 1.16603 0.82051 0.77779 0.84962 1.90891 1.37628 1.50303 1.60317 1.20909 1.10942 0.90745 0.91004 1.20307 1.08507 0.94922 0.92873 1.21830 1.04769 0.91056 0.94926 1.72743 1.21443 1.10607 1.06044 1.45645 1.50830 1.08660 1.02271 1.22127 1.03593 0.75520 1.03750 1.19986 1.01471 0.91590 0.93809 1.21567 0.99940 0.96735 0.97144 1.21570 1.01257 0.98206 0.94312 1.20021 1.01497 0.88815 0.98310 1.22405 0.95793 1.03218 0.78686 0.94393 0.92823 0.93393 0.78239 0.93486 0.89896 0.90262 0.91473 0.92177 0.89784 0.88455 0.88963 0.90289 0.90252 0.91045 0.91498 0.91589 0.91191 0.90568 0.90669 0.90687 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.35 37.16 0.35 -2.34 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.16 16 3 H 0.05 0.90 8.07 -51.92 -0.42 0.48 16 4 N -0.72 -17.14 4.90 -53.43 -0.26 -17.40 16 5 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 9 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.10 -1.48 2.65 -88.36 -0.23 -1.72 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.34 5.41 -24.90 -0.13 -1.48 16 16 C 0.10 1.14 6.47 -3.06 -0.02 1.12 16 17 N -0.61 -8.67 3.32 -171.74 -0.57 -9.25 16 18 C 0.60 9.65 6.99 -12.64 -0.09 9.57 16 19 O -0.52 -10.39 17.40 5.25 0.09 -10.30 16 20 C -0.01 -0.13 5.88 -82.31 -0.48 -0.61 16 21 C -0.16 -2.03 6.02 -104.44 -0.63 -2.66 16 22 C 0.03 0.42 7.14 -82.55 -0.59 -0.17 16 23 N -0.28 -3.62 11.89 33.65 0.40 -3.22 16 24 N -0.29 -3.58 3.77 -64.10 -0.24 -3.82 16 25 C 0.09 0.80 11.22 59.85 0.67 1.47 16 26 C -0.03 -0.25 6.31 -27.60 -0.17 -0.43 16 27 C -0.12 -0.85 5.85 -26.51 -0.16 -1.00 16 28 C -0.12 -0.98 5.88 -26.46 -0.16 -1.14 16 29 C -0.05 -0.54 6.22 -27.78 -0.17 -0.71 16 30 C 0.12 1.97 6.15 -2.41 -0.01 1.95 16 31 H 0.04 0.49 7.26 -51.93 -0.38 0.12 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.85 7.68 -51.93 -0.40 0.45 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 47 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 52 H 0.09 1.69 8.08 -51.93 -0.42 1.27 16 LS Contribution 415.80 15.07 6.27 6.27 Total: -1.00 -33.46 415.80 -9.93 -43.38 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -9.07 Total: 6.20 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.24 Total: -1.96 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.05 Total: -60.78 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.46 -9.93 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724529514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.907 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds