Wall clock time and date at job start Wed Apr 1 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47204 * 2 1 4 4 N 1.46496 * 109.47004 * 240.00123 * 2 1 3 5 5 C 1.36938 * 119.99887 * 85.27703 * 4 2 1 6 6 H 1.07991 * 120.00362 * 359.72585 * 5 4 2 7 7 C 1.38815 * 119.99801 * 179.72259 * 5 4 2 8 8 N 1.31623 * 120.00235 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47315 * 59.99933 * 9 7 5 11 11 H 1.48503 * 109.47141 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47078 * 299.99942 * 9 7 5 13 13 C 1.52994 * 109.47250 * 119.99965 * 2 1 3 14 14 H 1.09004 * 110.88828 * 60.70317 * 13 2 1 15 15 C 1.55164 * 111.00685 * 184.57930 * 13 2 1 16 16 C 1.54371 * 102.91932 * 153.54747 * 15 13 2 17 17 N 1.47026 * 107.29002 * 337.86267 * 16 15 13 18 18 C 1.34777 * 125.64563 * 178.87307 * 17 16 15 19 19 O 1.21627 * 119.99712 * 174.86425 * 18 17 16 20 20 C 1.47165 * 120.00254 * 354.86177 * 18 17 16 21 21 C 1.37196 * 127.04218 * 99.56962 * 20 18 17 22 22 C 1.40084 * 105.88044 * 180.02562 * 21 20 18 23 23 N 1.30107 * 107.73036 * 359.91990 * 22 21 20 24 24 N 1.28825 * 110.77971 * 359.81875 * 23 22 21 25 25 C 1.46501 * 125.15355 * 180.23260 * 24 23 22 26 26 C 1.50869 * 123.21765 * 179.82689 * 22 21 20 27 27 C 1.53398 * 108.17735 * 343.20987 * 26 22 21 28 28 C 1.53027 * 109.88754 * 50.75013 * 27 26 22 29 29 C 1.50379 * 129.91289 * 0.14995 * 21 20 18 30 30 C 1.47418 * 108.70176 * 358.90857 * 17 16 15 31 31 H 1.09008 * 109.47494 * 300.00198 * 1 2 3 32 32 H 1.09002 * 109.47367 * 59.99936 * 1 2 3 33 33 H 1.08994 * 109.47488 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00128 * 264.99864 * 4 2 1 35 35 H 0.96996 * 120.00325 * 179.97438 * 8 7 5 36 36 H 1.08991 * 110.72182 * 271.94280 * 15 13 2 37 37 H 1.09000 * 110.71511 * 35.21876 * 15 13 2 38 38 H 1.09007 * 109.90196 * 218.42591 * 16 15 13 39 39 H 1.08992 * 109.97318 * 97.34588 * 16 15 13 40 40 H 1.08996 * 109.47195 * 275.11076 * 25 24 23 41 41 H 1.08999 * 109.47127 * 35.11623 * 25 24 23 42 42 H 1.09001 * 109.46931 * 155.11270 * 25 24 23 43 43 H 1.08996 * 109.72262 * 223.54346 * 26 22 21 44 44 H 1.08995 * 109.76074 * 102.90129 * 26 22 21 45 45 H 1.09003 * 109.40520 * 290.61843 * 27 26 22 46 46 H 1.09004 * 109.39736 * 170.87356 * 27 26 22 47 47 H 1.08994 * 109.43715 * 168.51447 * 28 27 26 48 48 H 1.09002 * 109.39540 * 48.62652 * 28 27 26 49 49 H 1.08998 * 109.73866 * 283.24296 * 29 21 20 50 50 H 1.09004 * 109.73485 * 43.92952 * 29 21 20 51 51 H 1.08999 * 110.37008 * 265.28482 * 30 17 16 52 52 H 1.09006 * 110.45928 * 143.01398 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1544 -0.0060 -2.3743 6 1 1.8976 1.0418 -2.4228 7 6 2.6225 -0.6590 -3.5063 8 7 2.9360 -1.9360 -3.4471 9 14 2.8076 0.2746 -5.1136 10 1 3.7613 1.3974 -4.9270 11 1 3.3212 -0.6427 -6.1625 12 1 1.4867 0.8110 -5.5294 13 6 2.0399 -0.7212 1.2492 14 1 1.6997 -1.7566 1.2663 15 6 3.5867 -0.6426 1.3443 16 6 3.8456 -0.7619 2.8615 17 7 2.6095 -0.3601 3.5487 18 6 2.4213 -0.3477 4.8832 19 8 1.3869 0.0928 5.3473 20 6 3.4672 -0.8670 5.7788 21 6 4.3932 -0.1361 6.4792 22 6 5.1657 -1.0694 7.1826 23 7 4.7078 -2.2545 6.9021 24 7 3.7118 -2.1789 6.0886 25 6 2.9571 -3.3228 5.5705 26 6 6.3115 -0.6820 8.0842 27 6 6.7145 0.7606 7.7530 28 6 5.4777 1.6617 7.7619 29 6 4.6031 1.3517 6.5391 30 6 1.6099 0.0259 2.5363 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6317 -1.1526 35 1 3.2628 -2.3924 -4.2382 36 1 4.0487 -1.4709 0.8073 37 1 3.9481 0.3135 0.9657 38 1 4.6626 -0.1010 3.1515 39 1 4.0938 -1.7919 3.1169 40 1 3.4665 -3.7283 4.6964 41 1 2.8885 -4.0914 6.3403 42 1 1.9548 -2.9995 5.2895 43 1 7.1566 -1.3486 7.9122 44 1 5.9985 -0.7463 9.1263 45 1 7.1769 0.7900 6.7663 46 1 7.4276 1.1171 8.4964 47 1 5.7893 2.7057 7.7297 48 1 4.9055 1.4820 8.6720 49 1 5.1051 1.6895 5.6325 50 1 3.6414 1.8554 6.6373 51 1 1.6307 1.1036 2.3742 52 1 0.6136 -0.2914 2.8442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724529515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:42 Heat of formation + Delta-G solvation = 24.095854 kcal Electronic energy + Delta-G solvation = -31259.911857 eV Core-core repulsion = 27259.828614 eV Total energy + Delta-G solvation = -4000.083243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.72666 -41.12226 -39.11462 -37.97414 -36.83843 -34.34282 -33.74531 -33.00945 -31.95214 -30.88617 -30.22112 -28.84974 -28.21390 -26.37375 -25.21358 -24.37160 -23.12629 -22.85982 -22.71520 -21.10450 -20.26200 -19.98217 -19.15902 -18.57444 -17.80433 -17.21327 -17.00752 -16.74965 -16.42577 -15.88434 -15.58241 -15.32910 -15.04547 -14.92456 -14.74334 -14.68205 -14.30088 -14.10173 -13.93999 -13.91823 -13.82758 -13.72286 -13.52658 -13.39730 -13.21415 -12.93225 -12.75220 -12.72532 -12.33411 -12.26941 -12.22745 -12.00757 -11.77136 -11.70087 -11.65733 -11.56228 -11.46803 -11.34046 -11.17635 -10.89880 -10.09409 -9.90243 -9.61775 -8.96436 -7.90088 -5.16711 0.52828 0.93886 1.49938 1.50953 1.52098 1.57000 1.57746 1.91970 2.58940 3.11894 3.27771 3.43622 3.54563 3.59442 3.80489 3.89895 4.01526 4.03301 4.10633 4.12390 4.19408 4.23376 4.30771 4.32890 4.43471 4.48176 4.53287 4.58754 4.61727 4.63927 4.65787 4.68382 4.70504 4.83223 4.92254 4.98670 5.01400 5.06353 5.08157 5.16068 5.19713 5.23448 5.26976 5.30771 5.37896 5.49775 5.56408 5.57984 5.61404 5.75726 6.17900 6.32365 6.73271 7.01452 7.39553 8.15459 8.38703 9.32950 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.002364 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.417473 B =11839.088557 C =12096.254269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.282 1.282 13 C -0.091 4.091 14 H 0.082 0.918 15 C -0.109 4.109 16 C 0.110 3.890 17 N -0.598 5.598 18 C 0.612 3.388 19 O -0.560 6.560 20 C -0.033 4.033 21 C -0.164 4.164 22 C 0.028 3.972 23 N -0.292 5.292 24 N -0.286 5.286 25 C 0.083 3.917 26 C -0.031 4.031 27 C -0.112 4.112 28 C -0.112 4.112 29 C -0.050 4.050 30 C 0.120 3.880 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 2.724 24.311 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.209 1.209 13 C -0.111 4.111 14 H 0.100 0.900 15 C -0.147 4.147 16 C -0.012 4.012 17 N -0.330 5.330 18 C 0.398 3.602 19 O -0.438 6.438 20 C -0.160 4.160 21 C -0.175 4.175 22 C -0.132 4.132 23 N -0.122 5.122 24 N -0.075 5.075 25 C -0.057 4.057 26 C -0.070 4.070 27 C -0.149 4.149 28 C -0.149 4.149 29 C -0.088 4.088 30 C -0.002 4.002 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.784 1.814 24.646 25.380 hybrid contribution -0.371 0.434 -1.632 1.729 sum 5.413 2.248 23.014 23.748 Atomic orbital electron populations 1.22370 0.98009 1.00927 1.00699 1.20289 0.92466 0.94929 0.84879 0.93379 1.42493 1.78335 1.10202 1.05975 1.19509 1.34296 0.94053 0.88423 0.90887 1.25409 1.03307 0.96787 1.01015 1.69782 1.52721 1.10051 1.29330 0.85356 0.77776 0.77424 0.80078 1.20505 1.22567 1.20879 1.22464 0.95642 0.99953 0.92995 0.90011 1.22487 0.95663 1.03543 0.92986 1.22132 0.86056 1.00593 0.92400 1.48493 1.16279 1.64148 1.04111 1.16677 0.84578 0.78456 0.80492 1.90822 1.28751 1.48385 1.75833 1.20796 1.02482 0.86637 1.06110 1.20665 0.97361 0.98235 1.01200 1.22429 1.01025 0.87579 1.02189 1.72785 1.02783 1.26071 1.10592 1.45937 1.23250 1.05218 1.33076 1.22377 0.95387 0.86069 1.01839 1.20172 0.92528 0.97608 0.96683 1.21573 0.97621 0.92698 1.03049 1.21571 0.96083 1.00719 0.96563 1.20100 1.00436 0.87851 1.00410 1.22314 0.92075 0.99961 0.85892 0.91363 0.94503 0.93804 0.79438 0.94240 0.90290 0.90720 0.90406 0.91025 0.88232 0.86801 0.89260 0.89337 0.89234 0.91737 0.88536 0.89469 0.91845 0.90261 0.92063 0.90330 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.31 71.98 0.67 -4.56 16 2 C 0.18 6.41 2.40 44.99 0.11 6.52 16 3 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 4 N -0.73 -33.57 4.90 -322.97 -1.58 -35.15 16 5 C -0.23 -12.06 9.93 84.03 0.83 -11.23 16 6 H 0.07 3.70 7.83 -2.92 -0.02 3.67 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 8 N -0.97 -56.90 13.06 21.65 0.28 -56.61 16 9 Si 0.96 44.82 29.55 68.60 2.03 46.85 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C -0.09 -2.55 2.64 -9.40 -0.02 -2.58 16 14 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 15 C -0.11 -2.92 6.21 31.80 0.20 -2.72 16 16 C 0.11 2.52 6.47 86.74 0.56 3.08 16 17 N -0.60 -15.18 3.33 -815.87 -2.71 -17.89 16 18 C 0.61 17.48 6.98 86.59 0.60 18.08 16 19 O -0.56 -19.63 17.41 -4.12 -0.07 -19.70 16 20 C -0.03 -0.87 5.88 40.44 0.24 -0.64 16 21 C -0.16 -3.92 6.02 -19.76 -0.12 -4.04 16 22 C 0.03 0.62 7.13 43.32 0.31 0.93 16 23 N -0.29 -7.25 11.89 -47.46 -0.56 -7.82 16 24 N -0.29 -6.85 3.77 -356.71 -1.34 -8.19 16 25 C 0.08 1.40 11.22 127.77 1.43 2.83 16 26 C -0.03 -0.45 6.32 30.03 0.19 -0.26 16 27 C -0.11 -1.26 5.85 30.74 0.18 -1.08 16 28 C -0.11 -1.49 5.88 30.77 0.18 -1.31 16 29 C -0.05 -0.96 6.22 29.92 0.19 -0.78 16 30 C 0.12 3.07 5.40 86.86 0.47 3.54 16 31 H 0.07 1.81 7.33 -2.38 -0.02 1.79 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.37 18.54 7.80 -92.71 -0.72 17.82 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.12 8.03 -2.39 -0.02 2.10 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.53 7.67 -2.39 -0.02 1.51 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 46 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.08 1.98 8.04 -2.39 -0.02 1.96 16 52 H 0.08 2.09 7.99 -2.38 -0.02 2.07 16 Total: -1.00 -68.66 415.84 2.70 -65.95 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.18 Total: 30.32 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 6.49 Total: 2.25 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.92 Total: -125.67 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.07 Total: -19.70 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.66 2.70 -65.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724529515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.050 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds