Wall clock time and date at job start Wed Apr 1 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47097 * 240.00154 * 2 1 3 5 5 C 1.50702 * 109.47055 * 64.99987 * 4 2 1 6 6 O 1.21285 * 120.00089 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00477 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00744 * 180.02562 * 7 5 4 9 9 C 1.53589 * 112.23834 * 59.64460 * 8 7 5 10 10 C 1.54226 * 106.67161 * 121.17945 * 9 8 7 11 11 C 1.54753 * 104.15972 * 24.93876 * 10 9 8 12 12 C 1.54782 * 103.21309 * 322.19173 * 11 10 9 13 13 H 1.09002 * 112.61234 * 274.65948 * 12 11 10 14 14 N 1.46980 * 108.68722 * 150.20192 * 12 11 10 15 15 C 1.36932 * 125.57981 * 65.83670 * 14 12 11 16 16 H 1.08004 * 120.00171 * 343.22577 * 15 14 12 17 17 C 1.38817 * 120.00067 * 163.23333 * 15 14 12 18 18 N 1.31619 * 119.99688 * 332.27400 * 17 15 14 19 19 Si 1.86802 * 120.00189 * 152.55059 * 17 15 14 20 20 H 1.48499 * 109.47220 * 179.72313 * 19 17 15 21 21 H 1.48497 * 109.46858 * 299.72354 * 19 17 15 22 22 H 1.48499 * 109.47145 * 59.72316 * 19 17 15 23 23 C 1.47374 * 108.83772 * 246.09788 * 14 12 11 24 24 C 1.54634 * 104.93389 * 24.37445 * 23 14 12 25 25 C 1.50700 * 109.47123 * 120.00479 * 2 1 3 26 26 C 1.39861 * 126.04182 * 60.02234 * 25 2 1 27 27 N 1.30843 * 108.20562 * 179.97438 * 26 25 2 28 28 N 1.40085 * 108.20101 * 359.97438 * 27 26 25 29 29 C 1.46497 * 126.03423 * 180.02562 * 28 27 26 30 30 C 1.34949 * 107.92715 * 359.75757 * 28 27 26 31 31 H 1.08996 * 109.46917 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46556 * 299.99757 * 1 2 3 33 33 H 1.08997 * 109.47070 * 59.99485 * 1 2 3 34 34 H 1.09002 * 109.47471 * 305.00104 * 4 2 1 35 35 H 1.08995 * 109.47607 * 184.99996 * 4 2 1 36 36 H 0.97003 * 119.99464 * 359.97438 * 7 5 4 37 37 H 1.08996 * 110.01710 * 240.48106 * 9 8 7 38 38 H 1.08997 * 110.02044 * 1.82813 * 9 8 7 39 39 H 1.08998 * 110.49238 * 143.61103 * 10 9 8 40 40 H 1.09006 * 110.48976 * 266.13645 * 10 9 8 41 41 H 1.08993 * 110.67203 * 203.76163 * 11 10 9 42 42 H 1.09002 * 110.66819 * 80.62105 * 11 10 9 43 43 H 0.96998 * 119.99882 * 354.27074 * 18 17 15 44 44 H 1.08996 * 110.36691 * 143.29999 * 23 14 12 45 45 H 1.08996 * 110.36456 * 265.62527 * 23 14 12 46 46 H 1.08999 * 111.07216 * 205.00033 * 24 23 14 47 47 H 1.09002 * 110.78788 * 81.29483 * 24 23 14 48 48 H 1.08000 * 125.90342 * 0.02562 * 26 25 2 49 49 H 1.09001 * 109.47363 * 89.97891 * 29 28 27 50 50 H 1.09002 * 109.47152 * 209.97475 * 29 28 27 51 51 H 1.08997 * 109.47467 * 329.97446 * 29 28 27 52 52 H 1.07999 * 126.12392 * 180.23552 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.0117 1.0875 -2.3632 7 7 1.9844 -0.3917 -3.7002 8 6 1.5973 0.3652 -4.8933 9 6 2.1717 1.7897 -4.8897 10 6 3.0350 1.9219 -6.1608 11 6 2.4388 0.8764 -7.1337 12 6 2.0814 -0.3085 -6.2042 13 1 2.9262 -0.9752 -6.0313 14 7 0.9297 -1.0226 -6.7733 15 6 0.9266 -1.7170 -7.9535 16 1 1.7129 -1.5568 -8.6764 17 6 -0.0872 -2.6267 -8.2210 18 7 -0.7047 -3.2341 -7.2300 19 14 -0.5700 -2.9945 -9.9877 20 1 -1.6652 -3.9972 -10.0031 21 1 -1.0329 -1.7457 -10.6445 22 1 0.6044 -3.5329 -10.7199 23 6 -0.2230 -0.8638 -5.8688 24 6 0.0618 0.4384 -5.0852 25 6 2.0324 -0.7105 1.2304 26 6 1.7739 -2.0410 1.5755 27 7 2.3784 -2.2944 2.7080 28 7 3.0420 -1.1314 3.1195 29 6 3.8423 -0.9810 4.3373 30 6 2.8189 -0.1759 2.1931 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6054 -1.7198 -1.2952 35 1 3.1263 -0.7995 -1.2057 36 1 2.4883 -1.2156 -3.7908 37 1 1.3616 2.5186 -4.9113 38 1 2.7866 1.9418 -4.0027 39 1 2.9481 2.9249 -6.5785 40 1 4.0770 1.6902 -5.9402 41 1 3.1789 0.5744 -7.8747 42 1 1.5448 1.2681 -7.6188 43 1 -0.3973 -3.1102 -6.3184 44 1 -1.1449 -0.7680 -6.4424 45 1 -0.2873 -1.7095 -5.1842 46 1 -0.4518 0.4376 -4.1238 47 1 -0.2164 1.3128 -5.6736 48 1 1.1790 -2.7391 1.0053 49 1 4.8794 -1.2406 4.1250 50 1 3.7895 0.0519 4.6815 51 1 3.4535 -1.6422 5.1117 52 1 3.1976 0.8352 2.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725607402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:33 Heat of formation + Delta-G solvation = 57.654967 kcal Electronic energy + Delta-G solvation = -31344.744788 eV Core-core repulsion = 27346.116777 eV Total energy + Delta-G solvation = -3998.628011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.46172 -40.27237 -38.42581 -35.35560 -34.46821 -33.43165 -32.95744 -31.55535 -30.10172 -29.65204 -27.90474 -26.74223 -26.52702 -25.87058 -23.77142 -22.89469 -21.40958 -21.07154 -20.12244 -19.91178 -19.23073 -18.83762 -17.46442 -17.08015 -16.65520 -15.82867 -15.68032 -15.39843 -14.86420 -14.57611 -14.53378 -13.89979 -13.80817 -13.60465 -13.44106 -13.40798 -13.24908 -13.02793 -12.91780 -12.76491 -12.54972 -12.31419 -11.89965 -11.67894 -11.52960 -11.48871 -11.19296 -11.03920 -10.91683 -10.66393 -10.59545 -10.52223 -10.37815 -10.25054 -10.11226 -9.97352 -9.89656 -9.63115 -9.47428 -9.32624 -8.60932 -8.54398 -8.37840 -6.92652 -6.07024 -3.12273 1.67098 2.29105 2.60816 2.91377 3.45858 3.50965 3.55392 3.72725 4.23883 4.58576 4.59479 4.72479 4.76721 4.82088 4.86709 5.01981 5.05684 5.11079 5.13418 5.23552 5.35382 5.36989 5.49528 5.55244 5.59991 5.62329 5.70184 5.70694 5.78163 5.86953 5.91354 6.03464 6.06862 6.12153 6.20368 6.23245 6.31338 6.33767 6.38361 6.41879 6.49424 6.55697 6.61876 6.70979 6.76954 6.89821 7.00274 7.13204 7.14502 7.48945 7.82561 7.84569 8.51026 8.54013 9.04400 9.84051 10.39410 11.25393 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002465 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.003223 B =11354.685785 C =12316.472944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 H 0.080 0.920 4 C -0.134 4.134 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.708 5.708 8 C 0.162 3.838 9 C -0.108 4.108 10 C -0.125 4.125 11 C -0.126 4.126 12 C 0.161 3.839 13 H 0.047 0.953 14 N -0.595 5.595 15 C -0.333 4.333 16 H 0.064 0.936 17 C -0.025 4.025 18 N -0.917 5.917 19 Si 1.062 2.938 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.146 3.854 24 C -0.132 4.132 25 C -0.225 4.225 26 C 0.056 3.944 27 N -0.300 5.300 28 N -0.381 5.381 29 C 0.103 3.897 30 C 0.054 3.946 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.269 0.731 44 H 0.050 0.950 45 H 0.023 0.977 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.182 0.818 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 8.222 18.980 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 H 0.099 0.901 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.415 6.415 7 N -0.358 5.358 8 C 0.075 3.925 9 C -0.147 4.147 10 C -0.163 4.163 11 C -0.167 4.167 12 C 0.053 3.947 13 H 0.065 0.935 14 N -0.320 5.320 15 C -0.461 4.461 16 H 0.082 0.918 17 C -0.227 4.227 18 N -0.558 5.558 19 Si 0.892 3.108 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.221 1.221 23 C 0.020 3.980 24 C -0.172 4.172 25 C -0.237 4.237 26 C -0.130 4.130 27 N -0.121 5.121 28 N -0.164 5.164 29 C -0.039 4.039 30 C -0.092 4.092 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.199 0.801 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.377 7.173 19.061 22.022 hybrid contribution 1.358 0.908 0.322 1.665 sum 9.736 8.081 19.383 23.147 Atomic orbital electron populations 1.21928 0.94070 1.01621 1.02830 1.19096 0.96061 0.97950 0.88048 0.90124 1.21751 1.02665 1.00440 0.92547 1.20584 0.79172 0.85781 0.84442 1.90641 1.39642 1.24572 1.86626 1.45976 1.57213 1.27383 1.05258 1.21572 0.95616 0.91072 0.84196 1.22238 0.99311 0.95637 0.97547 1.22371 0.98697 0.99264 0.95994 1.22868 1.00559 0.95748 0.97485 1.21815 0.91379 0.92243 0.89275 0.93529 1.44557 1.04247 1.60362 1.22859 1.19688 1.14006 1.20063 0.92312 0.91812 1.25701 0.97609 0.93778 1.05617 1.70781 1.45401 1.38508 1.01095 0.83558 0.76261 0.75961 0.74992 1.21172 1.22155 1.22094 1.21495 0.91870 0.92754 0.91835 1.23088 0.94093 0.99654 1.00323 1.20134 1.07503 0.95344 1.00673 1.23786 0.99017 0.96186 0.94006 1.77364 1.13507 1.05908 1.15317 1.48439 1.40380 1.08532 1.19007 1.21819 0.94553 1.03445 0.84035 1.22340 1.00320 0.95708 0.90820 0.93283 0.93249 0.90260 0.88965 0.89313 0.76641 0.91250 0.92174 0.92236 0.92351 0.92333 0.90867 0.91986 0.93210 0.95912 0.91049 0.91132 0.80139 0.90878 0.89595 0.89414 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 2 C 0.01 0.09 2.40 -91.77 -0.22 -0.13 16 3 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 4 C -0.13 -1.44 5.03 -27.88 -0.14 -1.58 16 5 C 0.51 7.24 6.71 -10.99 -0.07 7.16 16 6 O -0.54 -8.88 11.84 5.55 0.07 -8.82 16 7 N -0.71 -10.59 5.24 -45.35 -0.24 -10.83 16 8 C 0.16 2.79 0.75 -129.37 -0.10 2.69 16 9 C -0.11 -1.69 5.23 -25.78 -0.13 -1.83 16 10 C -0.13 -1.83 6.84 -25.17 -0.17 -2.00 16 11 C -0.13 -2.26 6.21 -24.87 -0.15 -2.42 16 12 C 0.16 3.18 3.66 -65.60 -0.24 2.94 16 13 H 0.05 0.94 7.97 -51.93 -0.41 0.52 16 14 N -0.60 -14.46 2.93 -161.27 -0.47 -14.93 16 15 C -0.33 -9.11 9.76 -15.06 -0.15 -9.26 16 16 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 17 C -0.03 -0.71 5.08 -17.43 -0.09 -0.80 16 18 N -0.92 -27.45 12.93 55.49 0.72 -26.73 16 19 Si 1.06 25.27 30.00 -169.99 -5.10 20.17 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.15 3.40 5.27 -2.70 -0.01 3.39 16 24 C -0.13 -2.56 5.76 -24.86 -0.14 -2.70 16 25 C -0.23 -2.29 4.80 -105.06 -0.50 -2.79 16 26 C 0.06 0.61 11.54 -17.37 -0.20 0.41 16 27 N -0.30 -3.56 12.58 30.62 0.39 -3.18 16 28 N -0.38 -3.58 4.01 -68.16 -0.27 -3.85 16 29 C 0.10 0.52 11.47 59.85 0.69 1.21 16 30 C 0.05 0.48 11.38 -17.22 -0.20 0.28 16 31 H 0.05 0.54 8.02 -51.93 -0.42 0.12 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.48 8.49 -40.82 -0.35 5.14 16 37 H 0.07 1.12 7.37 -51.93 -0.38 0.73 16 38 H 0.06 0.92 7.40 -51.93 -0.38 0.54 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 43 H 0.27 8.04 6.03 -40.82 -0.25 7.79 16 44 H 0.05 1.29 7.92 -51.93 -0.41 0.88 16 45 H 0.02 0.57 6.83 -51.93 -0.35 0.22 16 46 H 0.07 1.38 6.84 -51.93 -0.36 1.02 16 47 H 0.07 1.35 7.62 -51.93 -0.40 0.96 16 48 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -33.64 405.36 -9.03 -42.67 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.71 Total: 6.21 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.51 Total: -6.82 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.12 Total: -59.52 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.10 Total: 20.17 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.64 -9.03 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725607402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.324 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds