Wall clock time and date at job start Wed Apr 1 2020 05:05:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.47375 * 2 1
4 4 C 1.52998 * 109.47097 * 240.00154 * 2 1 3
5 5 C 1.50702 * 109.47055 * 64.99987 * 4 2 1
6 6 O 1.21285 * 120.00089 * 0.02562 * 5 4 2
7 7 N 1.34774 * 120.00477 * 180.02562 * 5 4 2
8 8 C 1.46497 * 120.00744 * 180.02562 * 7 5 4
9 9 C 1.53589 * 112.23834 * 59.64460 * 8 7 5
10 10 C 1.54226 * 106.67161 * 121.17945 * 9 8 7
11 11 C 1.54753 * 104.15972 * 24.93876 * 10 9 8
12 12 C 1.54782 * 103.21309 * 322.19173 * 11 10 9
13 13 H 1.09002 * 112.61234 * 274.65948 * 12 11 10
14 14 N 1.46980 * 108.68722 * 150.20192 * 12 11 10
15 15 C 1.36932 * 125.57981 * 65.83670 * 14 12 11
16 16 H 1.08004 * 120.00171 * 343.22577 * 15 14 12
17 17 C 1.38817 * 120.00067 * 163.23333 * 15 14 12
18 18 N 1.31619 * 119.99688 * 332.27400 * 17 15 14
19 19 Si 1.86802 * 120.00189 * 152.55059 * 17 15 14
20 20 H 1.48499 * 109.47220 * 179.72313 * 19 17 15
21 21 H 1.48497 * 109.46858 * 299.72354 * 19 17 15
22 22 H 1.48499 * 109.47145 * 59.72316 * 19 17 15
23 23 C 1.47374 * 108.83772 * 246.09788 * 14 12 11
24 24 C 1.54634 * 104.93389 * 24.37445 * 23 14 12
25 25 C 1.50700 * 109.47123 * 120.00479 * 2 1 3
26 26 C 1.39861 * 126.04182 * 60.02234 * 25 2 1
27 27 N 1.30843 * 108.20562 * 179.97438 * 26 25 2
28 28 N 1.40085 * 108.20101 * 359.97438 * 27 26 25
29 29 C 1.46497 * 126.03423 * 180.02562 * 28 27 26
30 30 C 1.34949 * 107.92715 * 359.75757 * 28 27 26
31 31 H 1.08996 * 109.46917 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46556 * 299.99757 * 1 2 3
33 33 H 1.08997 * 109.47070 * 59.99485 * 1 2 3
34 34 H 1.09002 * 109.47471 * 305.00104 * 4 2 1
35 35 H 1.08995 * 109.47607 * 184.99996 * 4 2 1
36 36 H 0.97003 * 119.99464 * 359.97438 * 7 5 4
37 37 H 1.08996 * 110.01710 * 240.48106 * 9 8 7
38 38 H 1.08997 * 110.02044 * 1.82813 * 9 8 7
39 39 H 1.08998 * 110.49238 * 143.61103 * 10 9 8
40 40 H 1.09006 * 110.48976 * 266.13645 * 10 9 8
41 41 H 1.08993 * 110.67203 * 203.76163 * 11 10 9
42 42 H 1.09002 * 110.66819 * 80.62105 * 11 10 9
43 43 H 0.96998 * 119.99882 * 354.27074 * 18 17 15
44 44 H 1.08996 * 110.36691 * 143.29999 * 23 14 12
45 45 H 1.08996 * 110.36456 * 265.62527 * 23 14 12
46 46 H 1.08999 * 111.07216 * 205.00033 * 24 23 14
47 47 H 1.09002 * 110.78788 * 81.29483 * 24 23 14
48 48 H 1.08000 * 125.90342 * 0.02562 * 26 25 2
49 49 H 1.09001 * 109.47363 * 89.97891 * 29 28 27
50 50 H 1.09002 * 109.47152 * 209.97475 * 29 28 27
51 51 H 1.08997 * 109.47467 * 329.97446 * 29 28 27
52 52 H 1.07999 * 126.12392 * 180.23552 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 1.6413 0.0571 -2.4766
6 8 1.0117 1.0875 -2.3632
7 7 1.9844 -0.3917 -3.7002
8 6 1.5973 0.3652 -4.8933
9 6 2.1717 1.7897 -4.8897
10 6 3.0350 1.9219 -6.1608
11 6 2.4388 0.8764 -7.1337
12 6 2.0814 -0.3085 -6.2042
13 1 2.9262 -0.9752 -6.0313
14 7 0.9297 -1.0226 -6.7733
15 6 0.9266 -1.7170 -7.9535
16 1 1.7129 -1.5568 -8.6764
17 6 -0.0872 -2.6267 -8.2210
18 7 -0.7047 -3.2341 -7.2300
19 14 -0.5700 -2.9945 -9.9877
20 1 -1.6652 -3.9972 -10.0031
21 1 -1.0329 -1.7457 -10.6445
22 1 0.6044 -3.5329 -10.7199
23 6 -0.2230 -0.8638 -5.8688
24 6 0.0618 0.4384 -5.0852
25 6 2.0324 -0.7105 1.2304
26 6 1.7739 -2.0410 1.5755
27 7 2.3784 -2.2944 2.7080
28 7 3.0420 -1.1314 3.1195
29 6 3.8423 -0.9810 4.3373
30 6 2.8189 -0.1759 2.1931
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3632 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8899
34 1 1.6054 -1.7198 -1.2952
35 1 3.1263 -0.7995 -1.2057
36 1 2.4883 -1.2156 -3.7908
37 1 1.3616 2.5186 -4.9113
38 1 2.7866 1.9418 -4.0027
39 1 2.9481 2.9249 -6.5785
40 1 4.0770 1.6902 -5.9402
41 1 3.1789 0.5744 -7.8747
42 1 1.5448 1.2681 -7.6188
43 1 -0.3973 -3.1102 -6.3184
44 1 -1.1449 -0.7680 -6.4424
45 1 -0.2873 -1.7095 -5.1842
46 1 -0.4518 0.4376 -4.1238
47 1 -0.2164 1.3128 -5.6736
48 1 1.1790 -2.7391 1.0053
49 1 4.8794 -1.2406 4.1250
50 1 3.7895 0.0519 4.6815
51 1 3.4535 -1.6422 5.1117
52 1 3.1976 0.8352 2.2173
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725607402.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:05:31
Heat of formation + Delta-G solvation = 37.159453 kcal
Electronic energy + Delta-G solvation = -31345.633540 eV
Core-core repulsion = 27346.116777 eV
Total energy + Delta-G solvation = -3999.516763 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-42.19306 -41.62157 -39.75755 -36.46525 -36.02472 -34.70270 -33.62483 -33.40668
-31.61078 -30.56056 -28.98425 -28.21622 -27.37723 -27.20692 -25.69553 -23.81199
-22.58273 -21.99009 -21.65617 -21.11010 -20.29653 -20.17783 -19.40034 -18.08056
-17.66184 -17.04299 -16.74073 -16.30381 -16.25984 -15.77720 -15.56819 -15.28806
-15.27505 -15.15280 -14.82088 -14.52556 -14.38649 -14.09659 -13.75390 -13.65434
-13.54244 -13.36867 -13.22614 -13.12422 -13.03829 -12.62240 -12.44460 -12.36899
-12.23281 -12.06069 -11.94987 -11.93434 -11.87940 -11.79402 -11.61301 -11.48437
-11.32064 -11.29727 -10.53358 -10.47068 -10.33871 -9.90818 -9.27232 -8.97199
-8.27191 -5.28868 0.98536 1.57803 1.65961 1.72754 1.78485 1.83276
1.84007 2.29121 2.65923 3.21042 3.30856 3.53767 3.63364 3.84507
3.86924 3.91131 4.01584 4.14977 4.25923 4.26325 4.30679 4.36124
4.39039 4.45897 4.48220 4.52920 4.57461 4.70103 4.71532 4.77599
4.77706 4.81025 4.83710 4.87834 4.89516 4.97560 5.05839 5.08362
5.14058 5.18361 5.24739 5.27249 5.32505 5.45534 5.51854 5.52272
5.70415 5.74252 5.78573 6.18326 6.35095 6.67178 6.76637 6.93733
7.38558 7.74420 8.33946 9.04774
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.015914 B = 0.002465 C = 0.002273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.003223 B =11354.685785 C =12316.472944
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.020 3.980
3 H 0.080 0.920
4 C -0.125 4.125
5 C 0.514 3.486
6 O -0.560 6.560
7 N -0.710 5.710
8 C 0.173 3.827
9 C -0.101 4.101
10 C -0.110 4.110
11 C -0.123 4.123
12 C 0.151 3.849
13 H 0.048 0.952
14 N -0.612 5.612
15 C -0.332 4.332
16 H 0.063 0.937
17 C -0.081 4.081
18 N -0.949 5.949
19 Si 1.111 2.889
20 H -0.295 1.295
21 H -0.283 1.283
22 H -0.273 1.273
23 C 0.156 3.844
24 C -0.119 4.119
25 C -0.240 4.240
26 C 0.046 3.954
27 N -0.338 5.338
28 N -0.382 5.382
29 C 0.093 3.907
30 C 0.063 3.937
31 H 0.048 0.952
32 H 0.052 0.948
33 H 0.054 0.946
34 H 0.098 0.902
35 H 0.109 0.891
36 H 0.406 0.594
37 H 0.065 0.935
38 H 0.070 0.930
39 H 0.080 0.920
40 H 0.078 0.922
41 H 0.060 0.940
42 H 0.052 0.948
43 H 0.255 0.745
44 H 0.012 0.988
45 H 0.001 0.999
46 H 0.071 0.929
47 H 0.072 0.928
48 H 0.186 0.814
49 H 0.084 0.916
50 H 0.114 0.886
51 H 0.087 0.913
52 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.944 9.959 19.887 25.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.000 4.000
3 H 0.099 0.901
4 C -0.165 4.165
5 C 0.302 3.698
6 O -0.439 6.439
7 N -0.361 5.361
8 C 0.086 3.914
9 C -0.140 4.140
10 C -0.148 4.148
11 C -0.163 4.163
12 C 0.045 3.955
13 H 0.065 0.935
14 N -0.337 5.337
15 C -0.461 4.461
16 H 0.081 0.919
17 C -0.277 4.277
18 N -0.592 5.592
19 Si 0.937 3.063
20 H -0.222 1.222
21 H -0.210 1.210
22 H -0.199 1.199
23 C 0.031 3.969
24 C -0.159 4.159
25 C -0.252 4.252
26 C -0.140 4.140
27 N -0.160 5.160
28 N -0.165 5.165
29 C -0.047 4.047
30 C -0.084 4.084
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.073 0.927
34 H 0.116 0.884
35 H 0.127 0.873
36 H 0.241 0.759
37 H 0.084 0.916
38 H 0.089 0.911
39 H 0.098 0.902
40 H 0.097 0.903
41 H 0.078 0.922
42 H 0.071 0.929
43 H 0.065 0.935
44 H 0.031 0.969
45 H 0.019 0.981
46 H 0.089 0.911
47 H 0.091 0.909
48 H 0.203 0.797
49 H 0.103 0.897
50 H 0.133 0.867
51 H 0.105 0.895
52 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges 10.786 8.926 19.995 24.409
hybrid contribution 0.656 0.394 0.121 0.775
sum 11.442 9.319 20.116 24.948
Atomic orbital electron populations
1.21865 0.95228 1.01283 1.01708 1.18938 0.94961 0.97923 0.88198
0.90133 1.21750 1.03935 1.00026 0.90782 1.21134 0.78297 0.85574
0.84772 1.90637 1.40535 1.25785 1.86922 1.45985 1.57486 1.27621
1.04968 1.21381 0.93614 0.92314 0.84129 1.22172 0.99428 0.93786
0.98595 1.22308 0.99214 0.99158 0.94130 1.22738 0.99959 0.95782
0.97781 1.22067 0.89882 0.92502 0.91062 0.93467 1.44740 1.06141
1.60222 1.22605 1.19931 1.13549 1.19206 0.93376 0.91917 1.27016
0.98146 0.94186 1.08372 1.70892 1.46758 1.40694 1.00881 0.82893
0.76308 0.75950 0.71192 1.22172 1.20993 1.19862 1.21272 0.90401
0.94073 0.91189 1.22951 0.96235 0.97240 0.99439 1.20071 1.08812
0.95166 1.01105 1.23973 0.99105 0.96844 0.94030 1.77303 1.14891
1.07727 1.16066 1.48793 1.39924 1.07847 1.19906 1.22165 0.94524
1.05355 0.82619 1.22844 0.99008 0.96695 0.89858 0.93266 0.92868
0.92726 0.88380 0.87264 0.75901 0.91613 0.91133 0.90153 0.90292
0.92161 0.92941 0.93451 0.96904 0.98100 0.91074 0.90941 0.79681
0.89711 0.86720 0.89461 0.77910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.27 8.82 71.98 0.64 -2.63 16
2 C 0.02 0.39 2.40 -11.54 -0.03 0.36 16
3 H 0.08 1.60 7.92 -2.39 -0.02 1.58 16
4 C -0.13 -2.49 5.03 29.85 0.15 -2.34 16
5 C 0.51 13.84 6.71 87.66 0.59 14.42 16
6 O -0.56 -17.92 11.84 -3.04 -0.04 -17.96 16
7 N -0.71 -20.47 5.24 -415.79 -2.18 -22.65 16
8 C 0.17 5.80 0.75 5.19 0.00 5.80 16
9 C -0.10 -2.90 5.23 31.21 0.16 -2.74 16
10 C -0.11 -2.87 6.84 31.61 0.22 -2.65 16
11 C -0.12 -4.22 6.21 31.80 0.20 -4.02 16
12 C 0.15 5.90 3.66 46.24 0.17 6.07 16
13 H 0.05 1.86 7.97 -2.39 -0.02 1.84 16
14 N -0.61 -30.38 2.93 -664.15 -1.94 -32.32 16
15 C -0.33 -18.46 9.76 84.04 0.82 -17.64 16
16 H 0.06 3.44 7.96 -2.91 -0.02 3.42 16
17 C -0.08 -4.69 5.08 84.86 0.43 -4.26 16
18 N -0.95 -58.89 12.93 21.65 0.28 -58.61 16
19 Si 1.11 51.68 30.00 68.60 2.06 53.74 16
20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16
21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
23 C 0.16 7.62 5.27 86.77 0.46 8.08 16
24 C -0.12 -4.68 5.76 31.81 0.18 -4.49 16
25 C -0.24 -4.46 4.80 -20.15 -0.10 -4.55 16
26 C 0.05 0.96 11.54 85.23 0.98 1.94 16
27 N -0.34 -7.74 12.58 -57.03 -0.72 -8.46 16
28 N -0.38 -6.39 4.01 -369.57 -1.48 -7.87 16
29 C 0.09 0.71 11.47 127.77 1.47 2.18 16
30 C 0.06 0.94 11.38 83.54 0.95 1.89 16
31 H 0.05 1.09 8.02 -2.39 -0.02 1.07 16
32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
33 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16
34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.41 10.72 8.49 -92.71 -0.79 9.93 16
37 H 0.07 1.97 7.37 -2.39 -0.02 1.95 16
38 H 0.07 1.93 7.40 -2.39 -0.02 1.91 16
39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16
41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
42 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16
43 H 0.26 16.03 6.03 -92.71 -0.56 15.47 16
44 H 0.01 0.69 7.92 -2.39 -0.02 0.67 16
45 H 0.00 0.07 6.83 -2.39 -0.02 0.05 16
46 H 0.07 2.79 6.84 -2.39 -0.02 2.78 16
47 H 0.07 2.80 7.62 -2.39 -0.02 2.78 16
48 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16
49 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16
51 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
52 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16
Total: -1.00 -75.03 405.36 3.60 -71.43
By element:
Atomic # 1 Polarization: 26.95 SS G_CDS: 0.33 Total: 27.28 kcal
Atomic # 6 Polarization: -11.87 SS G_CDS: 7.29 Total: -4.58 kcal
Atomic # 7 Polarization: -123.87 SS G_CDS: -6.04 Total: -129.91 kcal
Atomic # 8 Polarization: -17.92 SS G_CDS: -0.04 Total: -17.96 kcal
Atomic # 14 Polarization: 51.68 SS G_CDS: 2.06 Total: 53.74 kcal
Total: -75.03 3.60 -71.43 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725607402.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.589 kcal
(2) G-P(sol) polarization free energy of solvation -75.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.159 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds