Wall clock time and date at job start Wed Apr 1 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47097 * 240.00154 * 2 1 3 5 5 C 1.50702 * 109.47055 * 64.99987 * 4 2 1 6 6 O 1.21285 * 120.00089 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00477 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00744 * 180.02562 * 7 5 4 9 9 C 1.53589 * 112.23834 * 59.64460 * 8 7 5 10 10 C 1.54226 * 106.67161 * 121.17945 * 9 8 7 11 11 C 1.54753 * 104.15972 * 24.93876 * 10 9 8 12 12 C 1.54782 * 103.21309 * 322.19173 * 11 10 9 13 13 H 1.09002 * 112.61234 * 274.65948 * 12 11 10 14 14 N 1.46980 * 108.68722 * 150.20192 * 12 11 10 15 15 C 1.36932 * 125.57981 * 65.83670 * 14 12 11 16 16 H 1.08004 * 120.00171 * 343.22577 * 15 14 12 17 17 C 1.38817 * 120.00067 * 163.23333 * 15 14 12 18 18 N 1.31619 * 119.99688 * 332.27400 * 17 15 14 19 19 Si 1.86802 * 120.00189 * 152.55059 * 17 15 14 20 20 H 1.48499 * 109.47220 * 179.72313 * 19 17 15 21 21 H 1.48497 * 109.46858 * 299.72354 * 19 17 15 22 22 H 1.48499 * 109.47145 * 59.72316 * 19 17 15 23 23 C 1.47374 * 108.83772 * 246.09788 * 14 12 11 24 24 C 1.54634 * 104.93389 * 24.37445 * 23 14 12 25 25 C 1.50700 * 109.47123 * 120.00479 * 2 1 3 26 26 C 1.39861 * 126.04182 * 60.02234 * 25 2 1 27 27 N 1.30843 * 108.20562 * 179.97438 * 26 25 2 28 28 N 1.40085 * 108.20101 * 359.97438 * 27 26 25 29 29 C 1.46497 * 126.03423 * 180.02562 * 28 27 26 30 30 C 1.34949 * 107.92715 * 359.75757 * 28 27 26 31 31 H 1.08996 * 109.46917 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46556 * 299.99757 * 1 2 3 33 33 H 1.08997 * 109.47070 * 59.99485 * 1 2 3 34 34 H 1.09002 * 109.47471 * 305.00104 * 4 2 1 35 35 H 1.08995 * 109.47607 * 184.99996 * 4 2 1 36 36 H 0.97003 * 119.99464 * 359.97438 * 7 5 4 37 37 H 1.08996 * 110.01710 * 240.48106 * 9 8 7 38 38 H 1.08997 * 110.02044 * 1.82813 * 9 8 7 39 39 H 1.08998 * 110.49238 * 143.61103 * 10 9 8 40 40 H 1.09006 * 110.48976 * 266.13645 * 10 9 8 41 41 H 1.08993 * 110.67203 * 203.76163 * 11 10 9 42 42 H 1.09002 * 110.66819 * 80.62105 * 11 10 9 43 43 H 0.96998 * 119.99882 * 354.27074 * 18 17 15 44 44 H 1.08996 * 110.36691 * 143.29999 * 23 14 12 45 45 H 1.08996 * 110.36456 * 265.62527 * 23 14 12 46 46 H 1.08999 * 111.07216 * 205.00033 * 24 23 14 47 47 H 1.09002 * 110.78788 * 81.29483 * 24 23 14 48 48 H 1.08000 * 125.90342 * 0.02562 * 26 25 2 49 49 H 1.09001 * 109.47363 * 89.97891 * 29 28 27 50 50 H 1.09002 * 109.47152 * 209.97475 * 29 28 27 51 51 H 1.08997 * 109.47467 * 329.97446 * 29 28 27 52 52 H 1.07999 * 126.12392 * 180.23552 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.0117 1.0875 -2.3632 7 7 1.9844 -0.3917 -3.7002 8 6 1.5973 0.3652 -4.8933 9 6 2.1717 1.7897 -4.8897 10 6 3.0350 1.9219 -6.1608 11 6 2.4388 0.8764 -7.1337 12 6 2.0814 -0.3085 -6.2042 13 1 2.9262 -0.9752 -6.0313 14 7 0.9297 -1.0226 -6.7733 15 6 0.9266 -1.7170 -7.9535 16 1 1.7129 -1.5568 -8.6764 17 6 -0.0872 -2.6267 -8.2210 18 7 -0.7047 -3.2341 -7.2300 19 14 -0.5700 -2.9945 -9.9877 20 1 -1.6652 -3.9972 -10.0031 21 1 -1.0329 -1.7457 -10.6445 22 1 0.6044 -3.5329 -10.7199 23 6 -0.2230 -0.8638 -5.8688 24 6 0.0618 0.4384 -5.0852 25 6 2.0324 -0.7105 1.2304 26 6 1.7739 -2.0410 1.5755 27 7 2.3784 -2.2944 2.7080 28 7 3.0420 -1.1314 3.1195 29 6 3.8423 -0.9810 4.3373 30 6 2.8189 -0.1759 2.1931 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6054 -1.7198 -1.2952 35 1 3.1263 -0.7995 -1.2057 36 1 2.4883 -1.2156 -3.7908 37 1 1.3616 2.5186 -4.9113 38 1 2.7866 1.9418 -4.0027 39 1 2.9481 2.9249 -6.5785 40 1 4.0770 1.6902 -5.9402 41 1 3.1789 0.5744 -7.8747 42 1 1.5448 1.2681 -7.6188 43 1 -0.3973 -3.1102 -6.3184 44 1 -1.1449 -0.7680 -6.4424 45 1 -0.2873 -1.7095 -5.1842 46 1 -0.4518 0.4376 -4.1238 47 1 -0.2164 1.3128 -5.6736 48 1 1.1790 -2.7391 1.0053 49 1 4.8794 -1.2406 4.1250 50 1 3.7895 0.0519 4.6815 51 1 3.4535 -1.6422 5.1117 52 1 3.1976 0.8352 2.2173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725607402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:31 Heat of formation + Delta-G solvation = 37.159453 kcal Electronic energy + Delta-G solvation = -31345.633540 eV Core-core repulsion = 27346.116777 eV Total energy + Delta-G solvation = -3999.516763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.19306 -41.62157 -39.75755 -36.46525 -36.02472 -34.70270 -33.62483 -33.40668 -31.61078 -30.56056 -28.98425 -28.21622 -27.37723 -27.20692 -25.69553 -23.81199 -22.58273 -21.99009 -21.65617 -21.11010 -20.29653 -20.17783 -19.40034 -18.08056 -17.66184 -17.04299 -16.74073 -16.30381 -16.25984 -15.77720 -15.56819 -15.28806 -15.27505 -15.15280 -14.82088 -14.52556 -14.38649 -14.09659 -13.75390 -13.65434 -13.54244 -13.36867 -13.22614 -13.12422 -13.03829 -12.62240 -12.44460 -12.36899 -12.23281 -12.06069 -11.94987 -11.93434 -11.87940 -11.79402 -11.61301 -11.48437 -11.32064 -11.29727 -10.53358 -10.47068 -10.33871 -9.90818 -9.27232 -8.97199 -8.27191 -5.28868 0.98536 1.57803 1.65961 1.72754 1.78485 1.83276 1.84007 2.29121 2.65923 3.21042 3.30856 3.53767 3.63364 3.84507 3.86924 3.91131 4.01584 4.14977 4.25923 4.26325 4.30679 4.36124 4.39039 4.45897 4.48220 4.52920 4.57461 4.70103 4.71532 4.77599 4.77706 4.81025 4.83710 4.87834 4.89516 4.97560 5.05839 5.08362 5.14058 5.18361 5.24739 5.27249 5.32505 5.45534 5.51854 5.52272 5.70415 5.74252 5.78573 6.18326 6.35095 6.67178 6.76637 6.93733 7.38558 7.74420 8.33946 9.04774 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002465 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.003223 B =11354.685785 C =12316.472944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.020 3.980 3 H 0.080 0.920 4 C -0.125 4.125 5 C 0.514 3.486 6 O -0.560 6.560 7 N -0.710 5.710 8 C 0.173 3.827 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.123 4.123 12 C 0.151 3.849 13 H 0.048 0.952 14 N -0.612 5.612 15 C -0.332 4.332 16 H 0.063 0.937 17 C -0.081 4.081 18 N -0.949 5.949 19 Si 1.111 2.889 20 H -0.295 1.295 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.156 3.844 24 C -0.119 4.119 25 C -0.240 4.240 26 C 0.046 3.954 27 N -0.338 5.338 28 N -0.382 5.382 29 C 0.093 3.907 30 C 0.063 3.937 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.255 0.745 44 H 0.012 0.988 45 H 0.001 0.999 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.186 0.814 49 H 0.084 0.916 50 H 0.114 0.886 51 H 0.087 0.913 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 9.959 19.887 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 H 0.099 0.901 4 C -0.165 4.165 5 C 0.302 3.698 6 O -0.439 6.439 7 N -0.361 5.361 8 C 0.086 3.914 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.163 4.163 12 C 0.045 3.955 13 H 0.065 0.935 14 N -0.337 5.337 15 C -0.461 4.461 16 H 0.081 0.919 17 C -0.277 4.277 18 N -0.592 5.592 19 Si 0.937 3.063 20 H -0.222 1.222 21 H -0.210 1.210 22 H -0.199 1.199 23 C 0.031 3.969 24 C -0.159 4.159 25 C -0.252 4.252 26 C -0.140 4.140 27 N -0.160 5.160 28 N -0.165 5.165 29 C -0.047 4.047 30 C -0.084 4.084 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.019 0.981 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.203 0.797 49 H 0.103 0.897 50 H 0.133 0.867 51 H 0.105 0.895 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.786 8.926 19.995 24.409 hybrid contribution 0.656 0.394 0.121 0.775 sum 11.442 9.319 20.116 24.948 Atomic orbital electron populations 1.21865 0.95228 1.01283 1.01708 1.18938 0.94961 0.97923 0.88198 0.90133 1.21750 1.03935 1.00026 0.90782 1.21134 0.78297 0.85574 0.84772 1.90637 1.40535 1.25785 1.86922 1.45985 1.57486 1.27621 1.04968 1.21381 0.93614 0.92314 0.84129 1.22172 0.99428 0.93786 0.98595 1.22308 0.99214 0.99158 0.94130 1.22738 0.99959 0.95782 0.97781 1.22067 0.89882 0.92502 0.91062 0.93467 1.44740 1.06141 1.60222 1.22605 1.19931 1.13549 1.19206 0.93376 0.91917 1.27016 0.98146 0.94186 1.08372 1.70892 1.46758 1.40694 1.00881 0.82893 0.76308 0.75950 0.71192 1.22172 1.20993 1.19862 1.21272 0.90401 0.94073 0.91189 1.22951 0.96235 0.97240 0.99439 1.20071 1.08812 0.95166 1.01105 1.23973 0.99105 0.96844 0.94030 1.77303 1.14891 1.07727 1.16066 1.48793 1.39924 1.07847 1.19906 1.22165 0.94524 1.05355 0.82619 1.22844 0.99008 0.96695 0.89858 0.93266 0.92868 0.92726 0.88380 0.87264 0.75901 0.91613 0.91133 0.90153 0.90292 0.92161 0.92941 0.93451 0.96904 0.98100 0.91074 0.90941 0.79681 0.89711 0.86720 0.89461 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.82 71.98 0.64 -2.63 16 2 C 0.02 0.39 2.40 -11.54 -0.03 0.36 16 3 H 0.08 1.60 7.92 -2.39 -0.02 1.58 16 4 C -0.13 -2.49 5.03 29.85 0.15 -2.34 16 5 C 0.51 13.84 6.71 87.66 0.59 14.42 16 6 O -0.56 -17.92 11.84 -3.04 -0.04 -17.96 16 7 N -0.71 -20.47 5.24 -415.79 -2.18 -22.65 16 8 C 0.17 5.80 0.75 5.19 0.00 5.80 16 9 C -0.10 -2.90 5.23 31.21 0.16 -2.74 16 10 C -0.11 -2.87 6.84 31.61 0.22 -2.65 16 11 C -0.12 -4.22 6.21 31.80 0.20 -4.02 16 12 C 0.15 5.90 3.66 46.24 0.17 6.07 16 13 H 0.05 1.86 7.97 -2.39 -0.02 1.84 16 14 N -0.61 -30.38 2.93 -664.15 -1.94 -32.32 16 15 C -0.33 -18.46 9.76 84.04 0.82 -17.64 16 16 H 0.06 3.44 7.96 -2.91 -0.02 3.42 16 17 C -0.08 -4.69 5.08 84.86 0.43 -4.26 16 18 N -0.95 -58.89 12.93 21.65 0.28 -58.61 16 19 Si 1.11 51.68 30.00 68.60 2.06 53.74 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 C 0.16 7.62 5.27 86.77 0.46 8.08 16 24 C -0.12 -4.68 5.76 31.81 0.18 -4.49 16 25 C -0.24 -4.46 4.80 -20.15 -0.10 -4.55 16 26 C 0.05 0.96 11.54 85.23 0.98 1.94 16 27 N -0.34 -7.74 12.58 -57.03 -0.72 -8.46 16 28 N -0.38 -6.39 4.01 -369.57 -1.48 -7.87 16 29 C 0.09 0.71 11.47 127.77 1.47 2.18 16 30 C 0.06 0.94 11.38 83.54 0.95 1.89 16 31 H 0.05 1.09 8.02 -2.39 -0.02 1.07 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.41 10.72 8.49 -92.71 -0.79 9.93 16 37 H 0.07 1.97 7.37 -2.39 -0.02 1.95 16 38 H 0.07 1.93 7.40 -2.39 -0.02 1.91 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 43 H 0.26 16.03 6.03 -92.71 -0.56 15.47 16 44 H 0.01 0.69 7.92 -2.39 -0.02 0.67 16 45 H 0.00 0.07 6.83 -2.39 -0.02 0.05 16 46 H 0.07 2.79 6.84 -2.39 -0.02 2.78 16 47 H 0.07 2.80 7.62 -2.39 -0.02 2.78 16 48 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 49 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 51 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -75.03 405.36 3.60 -71.43 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.33 Total: 27.28 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 7.29 Total: -4.58 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -6.04 Total: -129.91 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.04 Total: -17.96 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.06 Total: 53.74 kcal Total: -75.03 3.60 -71.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725607402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.589 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds