Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46894 * 2 1 4 4 N 1.46503 * 109.46723 * 119.99920 * 2 1 3 5 5 C 1.36942 * 119.99565 * 274.99450 * 4 2 1 6 6 H 1.08000 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99765 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99937 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47438 * 89.99947 * 9 7 5 11 11 H 1.48506 * 109.46792 * 209.99926 * 9 7 5 12 12 H 1.48503 * 109.47265 * 329.99611 * 9 7 5 13 13 C 1.52998 * 109.47116 * 239.99523 * 2 1 3 14 14 H 1.08999 * 109.58463 * 54.04647 * 13 2 1 15 15 C 1.53200 * 109.58578 * 293.76547 * 13 2 1 16 16 C 1.53039 * 109.30841 * 185.43235 * 15 13 2 17 17 C 1.53044 * 109.53923 * 61.36826 * 16 15 13 18 18 C 1.53196 * 109.30936 * 298.63439 * 17 16 15 19 19 N 1.46917 * 109.70388 * 174.40610 * 13 2 1 20 20 C 1.34775 * 120.63065 * 353.46009 * 19 13 2 21 21 O 1.21632 * 120.00136 * 4.51072 * 20 19 13 22 22 C 1.47165 * 120.00109 * 184.50633 * 20 19 13 23 23 C 1.38089 * 126.94198 * 99.57095 * 22 20 19 24 24 C 1.39531 * 105.70745 * 179.84633 * 23 22 20 25 25 N 1.31060 * 107.60071 * 0.42641 * 24 23 22 26 26 N 1.28443 * 110.96682 * 359.72281 * 25 24 23 27 27 C 1.46507 * 125.19929 * 180.02562 * 26 25 24 28 28 C 1.51277 * 109.37145 * 180.25905 * 24 23 22 29 29 C 1.54638 * 105.18280 * 342.51641 * 28 24 23 30 30 C 1.50856 * 144.40793 * 359.93892 * 23 22 20 31 31 H 1.09000 * 109.47177 * 185.02870 * 1 2 3 32 32 H 1.09001 * 109.47103 * 305.02649 * 1 2 3 33 33 H 1.08996 * 109.47154 * 65.02923 * 1 2 3 34 34 H 0.96998 * 120.00267 * 95.00273 * 4 2 1 35 35 H 0.97007 * 120.00035 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.49755 * 305.38431 * 15 13 2 37 37 H 1.08996 * 109.49609 * 65.45357 * 15 13 2 38 38 H 1.09003 * 109.45895 * 181.38309 * 16 15 13 39 39 H 1.08992 * 109.46292 * 301.34495 * 16 15 13 40 40 H 1.09001 * 109.49750 * 58.57576 * 17 16 15 41 41 H 1.09001 * 109.49966 * 178.68195 * 17 16 15 42 42 H 1.08999 * 109.58447 * 174.42564 * 18 17 16 43 43 H 1.09008 * 109.58521 * 294.84187 * 18 17 16 44 44 H 1.09001 * 109.46604 * 265.00003 * 27 26 25 45 45 H 1.08999 * 109.46794 * 24.99852 * 27 26 25 46 46 H 1.08994 * 109.47220 * 144.99985 * 27 26 25 47 47 H 1.09005 * 110.28258 * 102.06456 * 28 24 23 48 48 H 1.09001 * 110.28218 * 224.16311 * 28 24 23 49 49 H 1.09001 * 111.10604 * 268.34070 * 29 28 24 50 50 H 1.09004 * 110.73587 * 144.89247 * 29 28 24 51 51 H 1.08996 * 110.30380 * 316.01072 * 30 23 22 52 52 H 1.09000 * 110.30378 * 78.06613 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4242 7 6 2.6122 -0.6615 3.5091 8 7 2.7375 -0.0050 4.6429 9 14 3.0576 -2.4737 3.4250 10 1 4.4904 -2.6150 3.0611 11 1 2.8185 -3.1041 4.7482 12 1 2.2181 -3.1428 2.3989 13 6 2.0400 -0.7213 -1.2492 14 1 1.5934 -0.2742 -2.1372 15 6 1.6628 -2.2044 -1.1758 16 6 2.2909 -2.9454 -2.3584 17 6 3.8151 -2.8304 -2.2833 18 6 4.2167 -1.3545 -2.3691 19 7 3.5030 -0.6087 -1.3237 20 6 4.1775 0.1643 -0.4497 21 8 3.5856 0.7115 0.4611 22 6 5.6304 0.3462 -0.5972 23 6 6.2783 1.4248 -1.1662 24 6 7.6409 1.1403 -1.0709 25 7 7.7620 -0.0300 -0.4935 26 7 6.6109 -0.5209 -0.2040 27 6 6.3836 -1.8130 0.4483 28 6 8.4347 2.2807 -1.6692 29 6 7.4223 3.0704 -2.5310 30 6 6.0789 2.7626 -1.8344 31 1 -0.3633 -1.0237 0.0901 32 1 -0.3633 0.5898 0.8415 33 1 -0.3633 0.4338 -0.9316 34 1 2.2490 -1.6318 1.1527 35 1 3.0615 -0.4620 5.4348 36 1 2.0334 -2.6283 -0.2425 37 1 0.5784 -2.3063 -1.2164 38 1 2.0038 -3.9963 -2.3222 39 1 1.9390 -2.5049 -3.2912 40 1 4.1654 -3.2484 -1.3395 41 1 4.2626 -3.3780 -3.1128 42 1 5.2918 -1.2589 -2.2171 43 1 3.9476 -0.9590 -3.3486 44 1 6.2031 -2.5756 -0.3093 45 1 7.2620 -2.0836 1.0342 46 1 5.5168 -1.7409 1.1051 47 1 8.8457 2.9100 -0.8797 48 1 9.2349 1.8939 -2.3002 49 1 7.4164 2.7091 -3.5594 50 1 7.6387 4.1383 -2.4991 51 1 5.2767 2.7022 -2.5698 52 1 5.8528 3.5268 -1.0909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731292063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = 108.673721 kcal Electronic energy + Delta-G solvation = -33873.119099 eV Core-core repulsion = 29876.703428 eV Total energy + Delta-G solvation = -3996.415672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.50012 -40.14679 -37.00100 -36.85210 -35.44481 -32.69636 -32.28648 -31.92610 -30.45406 -30.05104 -28.53745 -27.47056 -26.36352 -25.18791 -24.04745 -23.19094 -22.33664 -21.29720 -20.54422 -20.08221 -19.68664 -18.35080 -17.48118 -16.79131 -16.44198 -15.67452 -15.60580 -14.98595 -14.81976 -14.56183 -14.47650 -14.12490 -13.92333 -13.75122 -13.66081 -13.28450 -12.88823 -12.76802 -12.64859 -12.59318 -12.48805 -12.35111 -12.22488 -11.97947 -11.77146 -11.57366 -11.45531 -11.16712 -11.05157 -11.01232 -10.85697 -10.80931 -10.68103 -10.57509 -10.23504 -10.15834 -9.94487 -9.35132 -8.86958 -8.82235 -8.47916 -8.31018 -8.12054 -6.96153 -5.54283 -2.83783 1.95114 2.42321 2.78082 3.20380 3.30424 3.33071 3.37124 3.46754 4.01551 4.57619 4.71174 4.72986 4.82192 4.84328 4.92433 4.97907 4.99588 5.13180 5.15301 5.23037 5.32039 5.35250 5.37975 5.46759 5.53296 5.56504 5.66723 5.67919 5.75994 5.76729 5.77985 5.79560 5.88639 5.95909 5.98810 6.04152 6.05533 6.08537 6.18249 6.21566 6.28618 6.33399 6.39033 6.59982 6.69537 6.78780 6.95448 7.03149 7.23388 7.72675 8.24372 8.30922 8.62011 8.73046 9.42691 10.14087 10.35096 11.66412 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.005296 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.141495 B = 5285.736212 C = 6100.152034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.175 3.825 3 H 0.089 0.911 4 N -0.731 5.731 5 C -0.180 4.180 6 H 0.088 0.912 7 C -0.011 4.011 8 N -0.945 5.945 9 Si 0.870 3.130 10 H -0.293 1.293 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.144 3.856 14 H 0.071 0.929 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.114 3.886 19 N -0.605 5.605 20 C 0.559 3.441 21 O -0.419 6.419 22 C 0.016 3.984 23 C -0.196 4.196 24 C 0.001 3.999 25 N -0.276 5.276 26 N -0.274 5.274 27 C 0.088 3.912 28 C -0.023 4.023 29 C -0.114 4.114 30 C -0.040 4.040 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.353 0.647 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -1.769 -20.603 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.066 3.934 3 H 0.107 0.893 4 N -0.374 5.374 5 C -0.311 4.311 6 H 0.106 0.894 7 C -0.204 4.204 8 N -0.596 5.596 9 Si 0.703 3.297 10 H -0.221 1.221 11 H -0.221 1.221 12 H -0.209 1.209 13 C 0.041 3.959 14 H 0.089 0.911 15 C -0.173 4.173 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.010 4.010 19 N -0.343 5.343 20 C 0.341 3.659 21 O -0.284 6.284 22 C -0.112 4.112 23 C -0.207 4.207 24 C -0.158 4.158 25 N -0.107 5.107 26 N -0.061 5.061 27 C -0.052 4.052 28 C -0.062 4.062 29 C -0.152 4.152 30 C -0.078 4.078 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.187 0.813 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.087 0.913 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.467 -2.220 -19.420 20.589 hybrid contribution -0.106 -1.290 0.011 1.295 sum 6.361 -3.510 -19.409 20.724 Atomic orbital electron populations 1.22534 0.99330 1.00975 1.00067 1.20673 0.90602 0.97946 0.84227 0.89350 1.42806 1.79227 1.08253 1.07155 1.18964 1.32541 0.94992 0.84556 0.89373 1.24546 1.03448 0.96316 0.96071 1.69667 1.55028 1.34726 1.00185 0.86769 0.77782 0.88636 0.76550 1.22068 1.22100 1.20870 1.21686 0.78465 0.95795 0.99949 0.91130 1.22021 1.01073 0.95473 0.98734 1.21508 0.94750 1.00424 0.98759 1.21950 0.97060 0.96157 1.02281 1.21568 0.96754 0.91380 0.91279 1.47840 1.06937 1.47225 1.32272 1.17239 0.84119 0.82039 0.82552 1.91240 1.65663 1.43875 1.27624 1.20851 0.91098 0.93286 1.05952 1.20986 0.94219 0.98012 1.07445 1.22630 0.95727 0.94056 1.03391 1.72604 1.07509 1.11947 1.18604 1.45660 1.01457 1.15937 1.43069 1.22226 1.05142 0.79757 0.98064 1.20397 0.96628 0.91073 0.98081 1.22403 0.93871 1.00135 0.98768 1.20296 0.97628 0.91570 0.98295 0.93669 0.92263 0.94464 0.81278 0.93689 0.91166 0.90484 0.91947 0.91886 0.91740 0.91082 0.90769 0.91671 0.90141 0.88367 0.88318 0.89855 0.90753 0.90885 0.90113 0.91257 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.15 37.16 0.34 -2.57 16 2 C 0.17 3.37 1.88 -67.93 -0.13 3.24 16 3 H 0.09 1.94 5.93 -52.12 -0.31 1.63 16 4 N -0.73 -17.07 3.41 -53.42 -0.18 -17.25 16 5 C -0.18 -5.15 8.46 -15.06 -0.13 -5.28 16 6 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.94 -30.93 13.97 55.49 0.78 -30.15 16 9 Si 0.87 22.47 27.74 -169.99 -4.71 17.76 16 10 H -0.29 -7.29 7.01 56.52 0.40 -6.90 16 11 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 13 C 0.14 2.19 2.71 -67.60 -0.18 2.00 16 14 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.13 -1.84 4.87 -26.61 -0.13 -1.97 16 16 C -0.12 -1.23 5.88 -26.69 -0.16 -1.39 16 17 C -0.14 -1.43 6.08 -26.61 -0.16 -1.59 16 18 C 0.11 1.36 6.32 -3.71 -0.02 1.34 16 19 N -0.61 -9.30 2.97 -166.57 -0.49 -9.79 16 20 C 0.56 10.56 6.75 -12.64 -0.09 10.48 16 21 O -0.42 -9.83 9.85 5.25 0.05 -9.78 16 22 C 0.02 0.29 4.82 -82.14 -0.40 -0.11 16 23 C -0.20 -3.17 7.02 -104.12 -0.73 -3.90 16 24 C 0.00 0.02 8.13 -82.16 -0.67 -0.65 16 25 N -0.28 -4.74 11.91 33.78 0.40 -4.34 16 26 N -0.27 -4.70 3.42 -63.94 -0.22 -4.92 16 27 C 0.09 1.33 11.11 59.85 0.66 2.00 16 28 C -0.02 -0.25 6.77 -26.74 -0.18 -0.43 16 29 C -0.11 -1.05 7.08 -25.12 -0.18 -1.22 16 30 C -0.04 -0.49 6.75 -27.06 -0.18 -0.68 16 31 H 0.04 0.75 6.99 -51.93 -0.36 0.39 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.35 8.17 3.50 -40.82 -0.14 8.03 16 35 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 36 H 0.07 1.16 6.05 -51.93 -0.31 0.85 16 37 H 0.08 0.99 7.01 -51.93 -0.36 0.62 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.95 6.12 -51.93 -0.32 0.63 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 45 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.10 1.79 7.84 -51.93 -0.41 1.38 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -35.61 393.12 -9.45 -45.06 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.57 Total: 8.66 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.42 Total: -1.16 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.28 Total: -66.46 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.78 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.61 -9.45 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.732 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds