Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46894 * 2 1 4 4 N 1.46503 * 109.46723 * 119.99920 * 2 1 3 5 5 C 1.36942 * 119.99565 * 274.99450 * 4 2 1 6 6 H 1.08000 * 119.99996 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99765 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99937 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99935 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47438 * 89.99947 * 9 7 5 11 11 H 1.48506 * 109.46792 * 209.99926 * 9 7 5 12 12 H 1.48503 * 109.47265 * 329.99611 * 9 7 5 13 13 C 1.52998 * 109.47116 * 239.99523 * 2 1 3 14 14 H 1.08999 * 109.58463 * 54.04647 * 13 2 1 15 15 C 1.53200 * 109.58578 * 293.76547 * 13 2 1 16 16 C 1.53039 * 109.30841 * 185.43235 * 15 13 2 17 17 C 1.53044 * 109.53923 * 61.36826 * 16 15 13 18 18 C 1.53196 * 109.30936 * 298.63439 * 17 16 15 19 19 N 1.46917 * 109.70388 * 174.40610 * 13 2 1 20 20 C 1.34775 * 120.63065 * 353.46009 * 19 13 2 21 21 O 1.21632 * 120.00136 * 4.51072 * 20 19 13 22 22 C 1.47165 * 120.00109 * 184.50633 * 20 19 13 23 23 C 1.38089 * 126.94198 * 99.57095 * 22 20 19 24 24 C 1.39531 * 105.70745 * 179.84633 * 23 22 20 25 25 N 1.31060 * 107.60071 * 0.42641 * 24 23 22 26 26 N 1.28443 * 110.96682 * 359.72281 * 25 24 23 27 27 C 1.46507 * 125.19929 * 180.02562 * 26 25 24 28 28 C 1.51277 * 109.37145 * 180.25905 * 24 23 22 29 29 C 1.54638 * 105.18280 * 342.51641 * 28 24 23 30 30 C 1.50856 * 144.40793 * 359.93892 * 23 22 20 31 31 H 1.09000 * 109.47177 * 185.02870 * 1 2 3 32 32 H 1.09001 * 109.47103 * 305.02649 * 1 2 3 33 33 H 1.08996 * 109.47154 * 65.02923 * 1 2 3 34 34 H 0.96998 * 120.00267 * 95.00273 * 4 2 1 35 35 H 0.97007 * 120.00035 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.49755 * 305.38431 * 15 13 2 37 37 H 1.08996 * 109.49609 * 65.45357 * 15 13 2 38 38 H 1.09003 * 109.45895 * 181.38309 * 16 15 13 39 39 H 1.08992 * 109.46292 * 301.34495 * 16 15 13 40 40 H 1.09001 * 109.49750 * 58.57576 * 17 16 15 41 41 H 1.09001 * 109.49966 * 178.68195 * 17 16 15 42 42 H 1.08999 * 109.58447 * 174.42564 * 18 17 16 43 43 H 1.09008 * 109.58521 * 294.84187 * 18 17 16 44 44 H 1.09001 * 109.46604 * 265.00003 * 27 26 25 45 45 H 1.08999 * 109.46794 * 24.99852 * 27 26 25 46 46 H 1.08994 * 109.47220 * 144.99985 * 27 26 25 47 47 H 1.09005 * 110.28258 * 102.06456 * 28 24 23 48 48 H 1.09001 * 110.28218 * 224.16311 * 28 24 23 49 49 H 1.09001 * 111.10604 * 268.34070 * 29 28 24 50 50 H 1.09004 * 110.73587 * 144.89247 * 29 28 24 51 51 H 1.08996 * 110.30380 * 316.01072 * 30 23 22 52 52 H 1.09000 * 110.30378 * 78.06613 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4242 7 6 2.6122 -0.6615 3.5091 8 7 2.7375 -0.0050 4.6429 9 14 3.0576 -2.4737 3.4250 10 1 4.4904 -2.6150 3.0611 11 1 2.8185 -3.1041 4.7482 12 1 2.2181 -3.1428 2.3989 13 6 2.0400 -0.7213 -1.2492 14 1 1.5934 -0.2742 -2.1372 15 6 1.6628 -2.2044 -1.1758 16 6 2.2909 -2.9454 -2.3584 17 6 3.8151 -2.8304 -2.2833 18 6 4.2167 -1.3545 -2.3691 19 7 3.5030 -0.6087 -1.3237 20 6 4.1775 0.1643 -0.4497 21 8 3.5856 0.7115 0.4611 22 6 5.6304 0.3462 -0.5972 23 6 6.2783 1.4248 -1.1662 24 6 7.6409 1.1403 -1.0709 25 7 7.7620 -0.0300 -0.4935 26 7 6.6109 -0.5209 -0.2040 27 6 6.3836 -1.8130 0.4483 28 6 8.4347 2.2807 -1.6692 29 6 7.4223 3.0704 -2.5310 30 6 6.0789 2.7626 -1.8344 31 1 -0.3633 -1.0237 0.0901 32 1 -0.3633 0.5898 0.8415 33 1 -0.3633 0.4338 -0.9316 34 1 2.2490 -1.6318 1.1527 35 1 3.0615 -0.4620 5.4348 36 1 2.0334 -2.6283 -0.2425 37 1 0.5784 -2.3063 -1.2164 38 1 2.0038 -3.9963 -2.3222 39 1 1.9390 -2.5049 -3.2912 40 1 4.1654 -3.2484 -1.3395 41 1 4.2626 -3.3780 -3.1128 42 1 5.2918 -1.2589 -2.2171 43 1 3.9476 -0.9590 -3.3486 44 1 6.2031 -2.5756 -0.3093 45 1 7.2620 -2.0836 1.0342 46 1 5.5168 -1.7409 1.1051 47 1 8.8457 2.9100 -0.8797 48 1 9.2349 1.8939 -2.3002 49 1 7.4164 2.7091 -3.5594 50 1 7.6387 4.1383 -2.4991 51 1 5.2767 2.7022 -2.5698 52 1 5.8528 3.5268 -1.0909 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731292063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = 85.145496 kcal Electronic energy + Delta-G solvation = -33874.139360 eV Core-core repulsion = 29876.703428 eV Total energy + Delta-G solvation = -3997.435932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.72110 -41.47606 -38.31793 -37.86651 -37.05716 -34.25804 -33.81988 -33.13995 -31.86026 -31.55126 -30.01398 -28.49086 -27.47367 -26.41766 -25.58629 -24.75724 -23.61075 -22.31058 -21.81199 -21.27627 -20.98482 -19.83149 -19.26711 -18.08703 -17.67527 -16.98450 -16.86091 -16.47068 -15.97938 -15.91532 -15.81084 -15.39138 -15.32664 -15.07855 -14.85677 -14.66686 -14.23566 -14.13277 -13.85844 -13.80839 -13.77663 -13.64658 -13.42823 -13.32881 -13.27391 -12.86922 -12.72740 -12.66976 -12.42727 -12.10464 -12.03138 -12.00823 -11.83453 -11.78880 -11.68511 -11.50515 -11.42634 -11.31524 -10.91231 -10.23099 -9.83245 -9.57102 -9.52904 -8.96417 -7.88225 -5.13288 0.66014 1.15091 1.22013 1.28633 1.37480 1.59731 1.85885 2.06144 2.51457 2.93554 3.37199 3.42998 3.72754 3.78118 3.83408 3.88907 3.92901 3.95845 4.01986 4.11778 4.22388 4.24665 4.25548 4.30404 4.33301 4.37563 4.55085 4.61859 4.72099 4.75440 4.80492 4.85129 4.87916 4.91794 4.95010 5.01821 5.04265 5.06745 5.10662 5.18514 5.21058 5.22728 5.40281 5.40666 5.45433 5.47906 5.56154 5.79656 5.84063 5.94754 6.33341 6.42060 7.06661 7.21427 7.33802 7.98963 8.19682 9.36833 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.005296 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.141495 B = 5285.736212 C = 6100.152034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.056 0.944 4 N -0.725 5.725 5 C -0.144 4.144 6 H 0.038 0.962 7 C -0.091 4.091 8 N -1.003 6.003 9 Si 0.940 3.060 10 H -0.282 1.282 11 H -0.304 1.304 12 H -0.253 1.253 13 C 0.147 3.853 14 H 0.105 0.895 15 C -0.132 4.132 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.111 3.889 19 N -0.597 5.597 20 C 0.561 3.439 21 O -0.486 6.486 22 C -0.012 4.012 23 C -0.209 4.209 24 C -0.005 4.005 25 N -0.296 5.296 26 N -0.282 5.282 27 C 0.088 3.912 28 C -0.024 4.024 29 C -0.098 4.098 30 C -0.045 4.045 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.357 0.643 35 H 0.246 0.754 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.077 0.923 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -3.669 -25.462 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.073 0.927 4 N -0.369 5.369 5 C -0.276 4.276 6 H 0.057 0.943 7 C -0.279 4.279 8 N -0.659 5.659 9 Si 0.770 3.230 10 H -0.209 1.209 11 H -0.231 1.231 12 H -0.177 1.177 13 C 0.045 3.955 14 H 0.122 0.878 15 C -0.170 4.170 16 C -0.146 4.146 17 C -0.171 4.171 18 C -0.011 4.011 19 N -0.333 5.333 20 C 0.344 3.656 21 O -0.357 6.357 22 C -0.140 4.140 23 C -0.220 4.220 24 C -0.164 4.164 25 N -0.126 5.126 26 N -0.069 5.069 27 C -0.052 4.052 28 C -0.063 4.063 29 C -0.135 4.135 30 C -0.083 4.083 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.192 0.808 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.126 0.874 51 H 0.095 0.905 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.079 -4.166 -24.406 25.751 hybrid contribution -0.311 -0.544 1.397 1.531 sum 6.768 -4.710 -23.009 24.442 Atomic orbital electron populations 1.22371 0.97405 1.01351 1.00755 1.20758 0.91779 0.96688 0.84744 0.92671 1.42697 1.79156 1.08192 1.06811 1.18728 1.29522 0.92924 0.86456 0.94348 1.25300 1.05178 1.01717 0.95710 1.69902 1.57901 1.36964 1.01104 0.85612 0.78396 0.82408 0.76631 1.20900 1.23109 1.17739 1.21698 0.78376 0.96934 0.98533 0.87776 1.22009 1.02127 0.93964 0.98930 1.21490 0.94144 1.01040 0.97964 1.21969 0.97477 0.94828 1.02848 1.21835 0.96011 0.92255 0.90999 1.47938 1.07219 1.46104 1.31994 1.17472 0.84572 0.81347 0.82160 1.91221 1.67018 1.46894 1.30542 1.20950 0.90881 0.94708 1.07470 1.21620 0.94639 0.98740 1.07001 1.23522 0.96523 0.94055 1.02334 1.72565 1.07525 1.13069 1.19432 1.45804 1.01331 1.16405 1.43402 1.22272 1.04105 0.80122 0.98704 1.20657 0.97266 0.89641 0.98690 1.22425 0.90687 1.01585 0.98825 1.20486 1.00202 0.89338 0.98259 0.92597 0.95533 0.90572 0.80803 0.94485 0.94320 0.89136 0.90359 0.89466 0.93278 0.87901 0.91656 0.89014 0.86948 0.87199 0.91879 0.89204 0.88530 0.89000 0.87436 0.90461 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.38 9.15 71.98 0.66 -4.72 16 2 C 0.17 6.56 1.88 44.99 0.08 6.64 16 3 H 0.06 2.57 5.93 -5.31 -0.03 2.54 16 4 N -0.72 -34.93 3.41 -322.93 -1.10 -36.03 16 5 C -0.14 -8.79 8.46 84.03 0.71 -8.08 16 6 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 7 C -0.09 -5.81 5.50 84.86 0.47 -5.34 16 8 N -1.00 -69.97 13.97 21.65 0.30 -69.67 16 9 Si 0.94 48.38 27.74 68.60 1.90 50.28 16 10 H -0.28 -13.85 7.01 99.48 0.70 -13.16 16 11 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 12 H -0.25 -11.57 6.52 99.48 0.65 -10.92 16 13 C 0.15 4.15 2.71 44.98 0.12 4.27 16 14 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.13 -3.17 4.87 30.67 0.15 -3.02 16 16 C -0.11 -1.75 5.88 30.62 0.18 -1.57 16 17 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 18 C 0.11 2.32 6.32 86.36 0.55 2.86 16 19 N -0.60 -17.59 2.97 -799.17 -2.37 -19.96 16 20 C 0.56 21.81 6.75 86.59 0.58 22.40 16 21 O -0.49 -24.34 9.85 -4.13 -0.04 -24.38 16 22 C -0.01 -0.45 4.82 40.70 0.20 -0.25 16 23 C -0.21 -6.75 7.02 -19.54 -0.14 -6.89 16 24 C 0.00 -0.15 8.13 43.17 0.35 0.21 16 25 N -0.30 -10.06 11.91 -47.03 -0.56 -10.62 16 26 N -0.28 -9.77 3.42 -356.22 -1.22 -10.99 16 27 C 0.09 2.67 11.11 127.77 1.42 4.08 16 28 C -0.02 -0.46 6.77 30.59 0.21 -0.25 16 29 C -0.10 -1.48 7.08 31.64 0.22 -1.26 16 30 C -0.04 -1.07 6.75 30.38 0.21 -0.86 16 31 H 0.05 1.77 6.99 -2.39 -0.02 1.75 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.36 16.61 3.50 -92.71 -0.32 16.29 16 35 H 0.25 16.53 8.31 -92.70 -0.77 15.76 16 36 H 0.04 1.19 6.05 -2.39 -0.01 1.17 16 37 H 0.09 1.95 7.01 -2.39 -0.02 1.93 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.53 6.12 -2.39 -0.01 1.51 16 43 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.11 2.56 8.07 -2.39 -0.02 2.55 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.06 2.36 7.84 -2.39 -0.02 2.35 16 47 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 48 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -87.12 393.12 3.58 -83.54 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.51 Total: 31.66 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.16 Total: 6.17 kcal Atomic # 7 Polarization: -142.32 SS G_CDS: -4.95 Total: -147.27 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.04 Total: -24.38 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.90 Total: 50.28 kcal Total: -87.12 3.58 -83.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.689 kcal (2) G-P(sol) polarization free energy of solvation -87.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds