Wall clock time and date at job start Wed Apr 1 2020 05:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47331 * 2 1 4 4 N 1.46498 * 109.47422 * 120.00513 * 2 1 3 5 5 C 1.36938 * 120.00035 * 287.12992 * 4 2 1 6 6 H 1.08005 * 119.99784 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47127 * 59.99669 * 9 7 5 11 11 H 1.48503 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47062 * 300.00052 * 9 7 5 13 13 C 1.53005 * 109.46998 * 240.00268 * 2 1 3 14 14 H 1.08998 * 109.70207 * 287.20085 * 13 2 1 15 15 C 1.53621 * 109.66330 * 47.79134 * 13 2 1 16 16 C 1.53041 * 109.24119 * 174.54791 * 15 13 2 17 17 C 1.53038 * 109.53974 * 298.51113 * 16 15 13 18 18 C 1.53186 * 109.31123 * 61.36484 * 17 16 15 19 19 N 1.46925 * 108.77850 * 305.36514 * 18 17 16 20 20 C 1.34781 * 120.63177 * 233.59066 * 19 18 17 21 21 O 1.21628 * 119.99424 * 184.94952 * 20 19 18 22 22 C 1.47159 * 120.00160 * 4.94239 * 20 19 18 23 23 C 1.38095 * 126.93674 * 98.15579 * 22 20 19 24 24 C 1.39526 * 105.70487 * 179.97438 * 23 22 20 25 25 N 1.31066 * 107.60514 * 359.97438 * 24 23 22 26 26 N 1.28444 * 110.96358 * 0.02562 * 25 24 23 27 27 C 1.46498 * 125.19819 * 179.97438 * 26 25 24 28 28 C 1.51571 * 109.44957 * 180.14595 * 24 23 22 29 29 C 1.54374 * 105.13157 * 16.86535 * 28 24 23 30 30 C 1.50853 * 144.41106 * 0.03187 * 23 22 20 31 31 H 1.08998 * 109.47026 * 62.39803 * 1 2 3 32 32 H 1.09002 * 109.46965 * 182.40076 * 1 2 3 33 33 H 1.08997 * 109.46552 * 302.40104 * 1 2 3 34 34 H 0.96999 * 120.00229 * 107.12257 * 4 2 1 35 35 H 0.97006 * 119.99820 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.63283 * 54.56093 * 15 13 2 37 37 H 1.08995 * 109.43203 * 294.41673 * 15 13 2 38 38 H 1.08997 * 109.46133 * 178.49178 * 16 15 13 39 39 H 1.09006 * 109.46041 * 58.53409 * 16 15 13 40 40 H 1.08998 * 109.49875 * 301.41442 * 17 16 15 41 41 H 1.09003 * 109.50004 * 181.31424 * 17 16 15 42 42 H 1.09008 * 109.58661 * 185.58057 * 18 17 16 43 43 H 1.09002 * 109.70639 * 65.22263 * 18 17 16 44 44 H 1.09005 * 109.46698 * 85.13971 * 27 26 25 45 45 H 1.09000 * 109.47496 * 205.13677 * 27 26 25 46 46 H 1.08993 * 109.46997 * 325.14206 * 27 26 25 47 47 H 1.09012 * 110.23661 * 258.02285 * 28 24 23 48 48 H 1.09000 * 110.46936 * 135.83478 * 28 24 23 49 49 H 1.09007 * 110.78238 * 215.54270 * 29 28 24 50 50 H 1.09004 * 110.78034 * 92.29625 * 29 28 24 51 51 H 1.08993 * 110.31014 * 43.97356 * 30 23 22 52 52 H 1.09009 * 110.38484 * 281.86136 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9174 -0.0903 2.4227 6 1 1.4780 0.8926 2.5082 7 6 2.3796 -0.7449 3.5560 8 7 2.9146 -1.9429 3.4518 9 14 2.2424 0.0744 5.2291 10 1 0.8143 0.3485 5.5305 11 1 2.8033 -0.8257 6.2686 12 1 3.0000 1.3516 5.2185 13 6 2.0400 -0.7212 -1.2493 14 1 1.8764 -1.7940 -1.1469 15 6 1.2960 -0.1988 -2.4877 16 6 1.9057 -0.8253 -3.7439 17 6 3.3760 -0.4164 -3.8577 18 6 4.1424 -0.9364 -2.6375 19 7 3.4750 -0.4559 -1.4199 20 6 4.1672 0.2107 -0.4749 21 8 3.6255 0.5243 0.5679 22 6 5.5784 0.5590 -0.7048 23 6 6.0736 1.7729 -1.1386 24 6 7.4584 1.6151 -1.2019 25 7 7.7353 0.3899 -0.8277 26 7 6.6637 -0.2533 -0.5312 27 6 6.6127 -1.6450 -0.0765 28 6 8.0931 2.9096 -1.6695 29 6 7.0053 3.9867 -1.4702 30 6 5.6969 3.1718 -1.5593 31 1 -0.3633 0.4761 -0.9107 32 1 -0.3633 -1.0268 0.0430 33 1 -0.3632 0.5507 0.8677 34 1 2.4133 -1.5733 1.1192 35 1 3.2374 -2.4006 4.2440 36 1 1.3890 0.8859 -2.5403 37 1 0.2428 -0.4713 -2.4197 38 1 1.3630 -0.4777 -4.6230 39 1 1.8346 -1.9111 -3.6793 40 1 3.4494 0.6703 -3.8975 41 1 3.8033 -0.8438 -4.7649 42 1 5.1667 -0.5645 -2.6637 43 1 4.1490 -2.0263 -2.6447 44 1 6.7668 -1.6808 1.0020 45 1 5.6389 -2.0709 -0.3186 46 1 7.3942 -2.2188 -0.5745 47 1 8.3649 2.8374 -2.7228 48 1 8.9711 3.1431 -1.0672 49 1 7.0507 4.7336 -2.2628 50 1 7.1018 4.4573 -0.4916 51 1 4.9488 3.5822 -0.8812 52 1 5.3200 3.1721 -2.5822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731292064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:34 Heat of formation + Delta-G solvation = 104.156039 kcal Electronic energy + Delta-G solvation = -33437.259697 eV Core-core repulsion = 29440.648124 eV Total energy + Delta-G solvation = -3996.611573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.43959 -39.98457 -36.92351 -36.78300 -35.25876 -32.71193 -32.24128 -31.89067 -30.40012 -29.88923 -27.81254 -27.42065 -26.29815 -25.15304 -24.29363 -22.90588 -22.32123 -21.28460 -20.18066 -20.01428 -19.88961 -18.42854 -17.16106 -16.61273 -16.19534 -15.58727 -15.53419 -14.89074 -14.86862 -14.57947 -14.29718 -14.00576 -13.86571 -13.63642 -13.43907 -13.09889 -12.88014 -12.82350 -12.59907 -12.52159 -12.46671 -12.25367 -12.10659 -11.97338 -11.72224 -11.40031 -11.17455 -11.15048 -10.97537 -10.95913 -10.84288 -10.66422 -10.61552 -10.41956 -10.19904 -10.09472 -9.75294 -9.45145 -8.82393 -8.68293 -8.45693 -8.26620 -8.08231 -6.53441 -5.52672 -2.72755 2.01990 2.50758 2.81328 3.25795 3.42937 3.57110 3.60581 3.62746 4.06414 4.64848 4.75910 4.80142 4.87173 4.89886 4.97459 5.02673 5.04967 5.17381 5.26126 5.30545 5.37175 5.40894 5.46584 5.58192 5.64830 5.67342 5.74975 5.75591 5.79086 5.83848 5.85905 5.87833 5.96524 6.03120 6.05856 6.09390 6.11544 6.12250 6.20387 6.25939 6.32944 6.43685 6.44574 6.73371 6.77321 6.87552 7.01840 7.08874 7.33413 7.83254 7.92298 8.35533 8.64738 8.82905 9.77110 10.33102 10.68532 11.71829 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.005194 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.358023 B = 5389.454928 C = 7040.981139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 H 0.057 0.943 4 N -0.691 5.691 5 C -0.185 4.185 6 H 0.062 0.938 7 C -0.025 4.025 8 N -0.946 5.946 9 Si 0.898 3.102 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.291 1.291 13 C 0.149 3.851 14 H 0.069 0.931 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.131 4.131 18 C 0.113 3.887 19 N -0.606 5.606 20 C 0.543 3.457 21 O -0.409 6.409 22 C 0.020 3.980 23 C -0.200 4.200 24 C 0.000 4.000 25 N -0.279 5.279 26 N -0.274 5.274 27 C 0.094 3.906 28 C -0.021 4.021 29 C -0.116 4.116 30 C -0.039 4.039 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 4.616 -19.152 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.070 3.930 3 H 0.075 0.925 4 N -0.332 5.332 5 C -0.317 4.317 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.597 5.597 9 Si 0.730 3.270 10 H -0.218 1.218 11 H -0.221 1.221 12 H -0.218 1.218 13 C 0.046 3.954 14 H 0.087 0.913 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.170 4.170 18 C -0.011 4.011 19 N -0.344 5.344 20 C 0.324 3.676 21 O -0.273 6.273 22 C -0.108 4.108 23 C -0.210 4.210 24 C -0.159 4.159 25 N -0.109 5.109 26 N -0.062 5.062 27 C -0.046 4.046 28 C -0.060 4.060 29 C -0.154 4.154 30 C -0.077 4.077 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.809 3.995 -18.108 19.432 hybrid contribution -0.387 0.332 0.936 1.066 sum 5.422 4.328 -17.172 18.521 Atomic orbital electron populations 1.22565 0.99430 1.00942 0.99912 1.20426 0.90734 0.96709 0.85131 0.92506 1.42238 1.71051 1.18421 1.01447 1.18977 1.29776 0.98868 0.84096 0.91952 1.24526 1.02956 0.97117 0.97217 1.69621 1.48575 1.13809 1.27720 0.86376 0.77269 0.78268 0.85038 1.21772 1.22134 1.21820 1.21634 0.78420 0.99669 0.95705 0.91317 1.22108 0.99791 1.00940 0.93854 1.21524 0.95361 1.00712 0.97997 1.21878 0.96068 1.01633 0.97386 1.21561 0.96452 0.98539 0.84547 1.47834 1.09407 1.57409 1.19715 1.17298 0.83810 0.82138 0.84308 1.91423 1.66633 1.46548 1.22697 1.20963 0.90068 0.92065 1.07697 1.20948 0.95184 0.95788 1.09107 1.22686 0.94773 0.93459 1.05014 1.72587 1.12137 1.06895 1.19326 1.45734 1.01641 1.11472 1.47349 1.22126 1.04679 0.75685 1.02089 1.20388 0.97832 0.87058 1.00770 1.22367 0.93631 0.96838 1.02533 1.20260 0.97751 0.88843 1.00849 0.94254 0.93526 0.92713 0.79016 0.94219 0.91523 0.90396 0.91990 0.91928 0.91526 0.91348 0.90698 0.91980 0.89311 0.88694 0.88952 0.90173 0.90648 0.90219 0.90778 0.90922 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.69 37.16 0.32 -2.72 16 2 C 0.18 3.62 1.84 -67.93 -0.12 3.50 16 3 H 0.06 1.29 6.35 -51.93 -0.33 0.96 16 4 N -0.69 -17.44 3.20 -53.42 -0.17 -17.61 16 5 C -0.19 -5.31 8.33 -15.06 -0.13 -5.44 16 6 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 8 N -0.95 -29.30 13.06 55.49 0.72 -28.58 16 9 Si 0.90 23.91 29.55 -169.99 -5.02 18.88 16 10 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 12 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 13 C 0.15 2.39 2.63 -67.37 -0.18 2.21 16 14 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 15 C -0.13 -1.58 4.43 -26.39 -0.12 -1.70 16 16 C -0.12 -1.18 5.88 -26.69 -0.16 -1.34 16 17 C -0.13 -1.33 6.08 -26.62 -0.16 -1.49 16 18 C 0.11 1.39 6.35 -3.71 -0.02 1.37 16 19 N -0.61 -9.58 2.97 -166.32 -0.49 -10.08 16 20 C 0.54 10.52 6.63 -12.64 -0.08 10.43 16 21 O -0.41 -9.94 10.14 5.25 0.05 -9.89 16 22 C 0.02 0.37 4.67 -82.14 -0.38 -0.02 16 23 C -0.20 -3.26 7.02 -104.12 -0.73 -3.99 16 24 C 0.00 0.00 8.14 -82.01 -0.67 -0.67 16 25 N -0.28 -4.75 11.91 33.86 0.40 -4.35 16 26 N -0.27 -4.64 3.69 -63.95 -0.24 -4.88 16 27 C 0.09 1.35 11.22 59.85 0.67 2.02 16 28 C -0.02 -0.24 6.79 -26.73 -0.18 -0.42 16 29 C -0.12 -1.16 7.06 -25.27 -0.18 -1.34 16 30 C -0.04 -0.50 6.76 -27.07 -0.18 -0.68 16 31 H 0.04 0.58 6.29 -51.93 -0.33 0.25 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 34 H 0.38 10.18 7.68 -40.82 -0.31 9.86 16 35 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.90 6.66 -51.93 -0.35 0.56 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.98 6.28 -51.92 -0.33 0.65 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.09 1.36 7.66 -51.93 -0.40 0.96 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.99 399.17 -9.89 -44.88 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.76 Total: 6.71 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.40 Total: -1.11 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 0.23 Total: -65.48 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.05 Total: -9.89 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.99 -9.89 -44.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.035 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds