Wall clock time and date at job start Wed Apr 1 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47331 * 2 1 4 4 N 1.46498 * 109.47422 * 120.00513 * 2 1 3 5 5 C 1.36938 * 120.00035 * 287.12992 * 4 2 1 6 6 H 1.08005 * 119.99784 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00228 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47127 * 59.99669 * 9 7 5 11 11 H 1.48503 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47062 * 300.00052 * 9 7 5 13 13 C 1.53005 * 109.46998 * 240.00268 * 2 1 3 14 14 H 1.08998 * 109.70207 * 287.20085 * 13 2 1 15 15 C 1.53621 * 109.66330 * 47.79134 * 13 2 1 16 16 C 1.53041 * 109.24119 * 174.54791 * 15 13 2 17 17 C 1.53038 * 109.53974 * 298.51113 * 16 15 13 18 18 C 1.53186 * 109.31123 * 61.36484 * 17 16 15 19 19 N 1.46925 * 108.77850 * 305.36514 * 18 17 16 20 20 C 1.34781 * 120.63177 * 233.59066 * 19 18 17 21 21 O 1.21628 * 119.99424 * 184.94952 * 20 19 18 22 22 C 1.47159 * 120.00160 * 4.94239 * 20 19 18 23 23 C 1.38095 * 126.93674 * 98.15579 * 22 20 19 24 24 C 1.39526 * 105.70487 * 179.97438 * 23 22 20 25 25 N 1.31066 * 107.60514 * 359.97438 * 24 23 22 26 26 N 1.28444 * 110.96358 * 0.02562 * 25 24 23 27 27 C 1.46498 * 125.19819 * 179.97438 * 26 25 24 28 28 C 1.51571 * 109.44957 * 180.14595 * 24 23 22 29 29 C 1.54374 * 105.13157 * 16.86535 * 28 24 23 30 30 C 1.50853 * 144.41106 * 0.03187 * 23 22 20 31 31 H 1.08998 * 109.47026 * 62.39803 * 1 2 3 32 32 H 1.09002 * 109.46965 * 182.40076 * 1 2 3 33 33 H 1.08997 * 109.46552 * 302.40104 * 1 2 3 34 34 H 0.96999 * 120.00229 * 107.12257 * 4 2 1 35 35 H 0.97006 * 119.99820 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.63283 * 54.56093 * 15 13 2 37 37 H 1.08995 * 109.43203 * 294.41673 * 15 13 2 38 38 H 1.08997 * 109.46133 * 178.49178 * 16 15 13 39 39 H 1.09006 * 109.46041 * 58.53409 * 16 15 13 40 40 H 1.08998 * 109.49875 * 301.41442 * 17 16 15 41 41 H 1.09003 * 109.50004 * 181.31424 * 17 16 15 42 42 H 1.09008 * 109.58661 * 185.58057 * 18 17 16 43 43 H 1.09002 * 109.70639 * 65.22263 * 18 17 16 44 44 H 1.09005 * 109.46698 * 85.13971 * 27 26 25 45 45 H 1.09000 * 109.47496 * 205.13677 * 27 26 25 46 46 H 1.08993 * 109.46997 * 325.14206 * 27 26 25 47 47 H 1.09012 * 110.23661 * 258.02285 * 28 24 23 48 48 H 1.09000 * 110.46936 * 135.83478 * 28 24 23 49 49 H 1.09007 * 110.78238 * 215.54270 * 29 28 24 50 50 H 1.09004 * 110.78034 * 92.29625 * 29 28 24 51 51 H 1.08993 * 110.31014 * 43.97356 * 30 23 22 52 52 H 1.09009 * 110.38484 * 281.86136 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.9174 -0.0903 2.4227 6 1 1.4780 0.8926 2.5082 7 6 2.3796 -0.7449 3.5560 8 7 2.9146 -1.9429 3.4518 9 14 2.2424 0.0744 5.2291 10 1 0.8143 0.3485 5.5305 11 1 2.8033 -0.8257 6.2686 12 1 3.0000 1.3516 5.2185 13 6 2.0400 -0.7212 -1.2493 14 1 1.8764 -1.7940 -1.1469 15 6 1.2960 -0.1988 -2.4877 16 6 1.9057 -0.8253 -3.7439 17 6 3.3760 -0.4164 -3.8577 18 6 4.1424 -0.9364 -2.6375 19 7 3.4750 -0.4559 -1.4199 20 6 4.1672 0.2107 -0.4749 21 8 3.6255 0.5243 0.5679 22 6 5.5784 0.5590 -0.7048 23 6 6.0736 1.7729 -1.1386 24 6 7.4584 1.6151 -1.2019 25 7 7.7353 0.3899 -0.8277 26 7 6.6637 -0.2533 -0.5312 27 6 6.6127 -1.6450 -0.0765 28 6 8.0931 2.9096 -1.6695 29 6 7.0053 3.9867 -1.4702 30 6 5.6969 3.1718 -1.5593 31 1 -0.3633 0.4761 -0.9107 32 1 -0.3633 -1.0268 0.0430 33 1 -0.3632 0.5507 0.8677 34 1 2.4133 -1.5733 1.1192 35 1 3.2374 -2.4006 4.2440 36 1 1.3890 0.8859 -2.5403 37 1 0.2428 -0.4713 -2.4197 38 1 1.3630 -0.4777 -4.6230 39 1 1.8346 -1.9111 -3.6793 40 1 3.4494 0.6703 -3.8975 41 1 3.8033 -0.8438 -4.7649 42 1 5.1667 -0.5645 -2.6637 43 1 4.1490 -2.0263 -2.6447 44 1 6.7668 -1.6808 1.0020 45 1 5.6389 -2.0709 -0.3186 46 1 7.3942 -2.2188 -0.5745 47 1 8.3649 2.8374 -2.7228 48 1 8.9711 3.1431 -1.0672 49 1 7.0507 4.7336 -2.2628 50 1 7.1018 4.4573 -0.4916 51 1 4.9488 3.5822 -0.8812 52 1 5.3200 3.1721 -2.5822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731292064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:32 Heat of formation + Delta-G solvation = 82.131358 kcal Electronic energy + Delta-G solvation = -33438.214759 eV Core-core repulsion = 29440.648124 eV Total energy + Delta-G solvation = -3997.566635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.67609 -41.35376 -38.23548 -37.83834 -36.94306 -34.29244 -33.75620 -33.05418 -31.65541 -31.48712 -29.40164 -28.46508 -27.42643 -26.54594 -25.90381 -24.36417 -23.59941 -22.32680 -21.51805 -21.31798 -21.03483 -19.80467 -18.86652 -18.13189 -17.44984 -16.93126 -16.82146 -16.63012 -15.88595 -15.83043 -15.60365 -15.48475 -15.14368 -14.93429 -14.88865 -14.49339 -14.24418 -13.91400 -13.82862 -13.76499 -13.65717 -13.54655 -13.49274 -13.36953 -13.01050 -12.80787 -12.70440 -12.60618 -12.42456 -12.18896 -12.05135 -12.00867 -11.80401 -11.72500 -11.62009 -11.43508 -11.37158 -11.24109 -10.80374 -10.25871 -9.84653 -9.51401 -9.48801 -8.60440 -7.80348 -4.96747 0.70799 1.23096 1.39533 1.43368 1.47725 1.62123 1.87396 2.13171 2.62360 2.97292 3.42322 3.53412 3.80960 3.83068 3.89870 3.93329 3.98528 4.07923 4.13259 4.21956 4.26122 4.28077 4.31606 4.35863 4.38947 4.44511 4.55154 4.68426 4.73491 4.74788 4.84697 4.86447 4.90674 4.92671 5.03027 5.05012 5.08325 5.08485 5.12405 5.18311 5.20540 5.26215 5.39351 5.40831 5.46601 5.52596 5.58289 5.60065 5.83738 5.88975 6.41615 6.47033 7.10396 7.36689 7.49232 8.26454 8.49262 9.44588 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.005194 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.358023 B = 5389.454928 C = 7040.981139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 H 0.031 0.969 4 N -0.695 5.695 5 C -0.169 4.169 6 H 0.053 0.947 7 C -0.089 4.089 8 N -0.976 5.976 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.151 3.849 14 H 0.065 0.935 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.124 4.124 18 C 0.109 3.891 19 N -0.597 5.597 20 C 0.549 3.451 21 O -0.477 6.477 22 C -0.008 4.008 23 C -0.213 4.213 24 C -0.005 4.005 25 N -0.297 5.297 26 N -0.281 5.281 27 C 0.094 3.906 28 C -0.019 4.019 29 C -0.105 4.105 30 C -0.042 4.042 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.364 0.636 35 H 0.240 0.760 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 5.664 -22.770 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.049 0.951 4 N -0.333 5.333 5 C -0.302 4.302 6 H 0.071 0.929 7 C -0.279 4.279 8 N -0.631 5.631 9 Si 0.783 3.217 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.225 1.225 13 C 0.048 3.952 14 H 0.083 0.917 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.162 4.162 18 C -0.013 4.013 19 N -0.333 5.333 20 C 0.331 3.669 21 O -0.346 6.346 22 C -0.136 4.136 23 C -0.223 4.223 24 C -0.165 4.165 25 N -0.127 5.127 26 N -0.069 5.069 27 C -0.045 4.045 28 C -0.058 4.058 29 C -0.143 4.143 30 C -0.080 4.080 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.195 0.805 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.144 0.856 47 H 0.125 0.875 48 H 0.104 0.896 49 H 0.136 0.864 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.918 5.051 -21.810 23.156 hybrid contribution -0.391 0.068 1.920 1.961 sum 5.528 5.120 -19.889 21.269 Atomic orbital electron populations 1.22414 0.97473 1.01024 1.00826 1.20521 0.91851 0.95393 0.85272 0.95136 1.42296 1.71080 1.17875 1.02073 1.19149 1.27434 0.97991 0.85654 0.92914 1.25135 1.04490 0.98105 1.00132 1.69758 1.50595 1.14996 1.27714 0.85501 0.77521 0.76897 0.81755 1.20570 1.22391 1.22487 1.21598 0.78949 0.98964 0.95699 0.91692 1.22070 1.00125 1.00772 0.92927 1.21517 0.95107 1.01022 0.97350 1.21859 0.96013 1.01426 0.96918 1.21816 0.96290 0.99282 0.83942 1.47918 1.09407 1.55889 1.20097 1.17577 0.84402 0.81027 0.83877 1.91376 1.68098 1.49944 1.25216 1.20970 0.89729 0.93409 1.09528 1.21569 0.95933 0.96532 1.08279 1.23582 0.95110 0.94005 1.03796 1.72553 1.12207 1.07913 1.20037 1.45883 1.01370 1.11986 1.47677 1.22186 1.05584 0.75484 1.01276 1.20637 0.98159 0.84621 1.02403 1.22405 0.91249 0.96841 1.03794 1.20448 0.99027 0.87139 1.01378 0.90222 0.93451 0.95183 0.80475 0.95074 0.91846 0.88988 0.89354 0.91184 0.91979 0.88504 0.91389 0.90681 0.91213 0.89260 0.85642 0.87457 0.89571 0.86399 0.91308 0.92755 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 8.69 71.98 0.63 -5.03 16 2 C 0.18 7.36 1.84 44.99 0.08 7.44 16 3 H 0.03 1.45 6.35 -2.39 -0.02 1.44 16 4 N -0.69 -36.66 3.20 -322.93 -1.03 -37.70 16 5 C -0.17 -10.13 8.33 84.03 0.70 -9.43 16 6 H 0.05 3.20 7.83 -2.91 -0.02 3.17 16 7 C -0.09 -5.50 5.50 84.86 0.47 -5.04 16 8 N -0.98 -63.10 13.06 21.65 0.28 -62.81 16 9 Si 0.95 51.03 29.55 68.60 2.03 53.06 16 10 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 12 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 13 C 0.15 4.78 2.63 45.12 0.12 4.90 16 14 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 15 C -0.12 -2.66 4.43 30.82 0.14 -2.52 16 16 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 17 C -0.12 -2.08 6.08 30.67 0.19 -1.90 16 18 C 0.11 2.52 6.35 86.36 0.55 3.07 16 19 N -0.60 -18.97 2.97 -798.36 -2.37 -21.34 16 20 C 0.55 22.16 6.63 86.59 0.57 22.73 16 21 O -0.48 -24.64 10.14 -4.12 -0.04 -24.68 16 22 C -0.01 -0.31 4.67 40.70 0.19 -0.12 16 23 C -0.21 -6.92 7.02 -19.54 -0.14 -7.05 16 24 C -0.01 -0.16 8.14 43.26 0.35 0.19 16 25 N -0.30 -10.07 11.91 -46.79 -0.56 -10.63 16 26 N -0.28 -9.76 3.69 -356.24 -1.31 -11.08 16 27 C 0.09 2.82 11.22 127.77 1.43 4.26 16 28 C -0.02 -0.37 6.79 30.59 0.21 -0.17 16 29 C -0.11 -1.81 7.06 31.54 0.22 -1.59 16 30 C -0.04 -1.02 6.76 30.38 0.21 -0.81 16 31 H 0.08 2.19 6.29 -2.39 -0.02 2.18 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 34 H 0.36 20.67 7.68 -92.71 -0.71 19.96 16 35 H 0.24 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.80 6.66 -2.39 -0.02 1.79 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.71 6.28 -2.38 -0.01 1.69 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.09 2.71 7.66 -2.39 -0.02 2.69 16 46 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 51 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -81.73 399.17 3.29 -78.43 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.21 Total: 29.44 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.09 Total: 7.31 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -4.99 Total: -143.56 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.03 Total: 53.06 kcal Total: -81.73 3.29 -78.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.564 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds