Wall clock time and date at job start Wed Apr 1 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46714 * 2 1 4 4 N 1.46490 * 109.47211 * 239.99562 * 2 1 3 5 5 C 1.36942 * 120.00047 * 71.21325 * 4 2 1 6 6 H 1.07996 * 119.99575 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00288 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00187 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47241 * 59.99890 * 9 7 5 11 11 H 1.48501 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47158 * 300.00169 * 9 7 5 13 13 C 1.53001 * 109.46674 * 119.99446 * 2 1 3 14 14 H 1.09006 * 109.58366 * 68.04047 * 13 2 1 15 15 C 1.53183 * 109.59229 * 307.60785 * 13 2 1 16 16 C 1.53042 * 109.31352 * 185.57995 * 15 13 2 17 17 C 1.53035 * 109.53966 * 61.36662 * 16 15 13 18 18 C 1.53624 * 109.24079 * 298.50956 * 17 16 15 19 19 N 1.46926 * 109.58414 * 188.31614 * 13 2 1 20 20 C 1.34774 * 120.63394 * 353.37848 * 19 13 2 21 21 O 1.21610 * 119.99822 * 6.88017 * 20 19 13 22 22 C 1.47409 * 120.00704 * 186.89005 * 20 19 13 23 23 N 1.31881 * 125.93278 * 6.33216 * 22 20 19 24 24 C 1.33366 * 109.15490 * 179.97438 * 23 22 20 25 25 C 1.34870 * 108.15912 * 359.97438 * 24 23 22 26 26 N 1.35667 * 107.37233 * 0.09094 * 25 24 23 27 27 C 1.46448 * 124.57993 * 179.79984 * 26 25 24 28 28 C 1.53242 * 108.78901 * 342.86829 * 27 26 25 29 29 C 1.53148 * 109.62978 * 50.42396 * 28 27 26 30 30 C 1.50769 * 128.32634 * 180.11204 * 25 24 23 31 31 H 1.08996 * 109.46944 * 60.00122 * 1 2 3 32 32 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46924 * 300.00447 * 1 2 3 34 34 H 0.97001 * 120.00798 * 251.21542 * 4 2 1 35 35 H 0.96995 * 120.00262 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.49840 * 305.53323 * 15 13 2 37 37 H 1.09001 * 109.49660 * 65.62314 * 15 13 2 38 38 H 1.09008 * 109.45778 * 181.38542 * 16 15 13 39 39 H 1.08998 * 109.45769 * 301.34252 * 16 15 13 40 40 H 1.09004 * 109.49885 * 58.58241 * 17 16 15 41 41 H 1.09001 * 109.49932 * 178.65173 * 17 16 15 42 42 H 1.09000 * 109.74053 * 295.11882 * 18 17 16 43 43 H 1.09002 * 109.66713 * 174.54916 * 18 17 16 44 44 H 1.07999 * 125.92169 * 179.97438 * 24 23 22 45 45 H 1.09009 * 109.58946 * 102.57959 * 27 26 25 46 46 H 1.08998 * 109.59177 * 223.02072 * 27 26 25 47 47 H 1.09001 * 109.39172 * 290.40474 * 28 27 26 48 48 H 1.09001 * 109.48990 * 170.50164 * 28 27 26 49 49 H 1.08994 * 109.50895 * 170.66063 * 29 28 27 50 50 H 1.09000 * 109.50663 * 50.55970 * 29 28 27 51 51 H 1.09007 * 109.72833 * 44.60101 * 30 25 24 52 52 H 1.08995 * 109.72701 * 283.91908 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 1.8865 -0.1048 -2.4268 6 1 1.4229 0.8665 -2.5155 7 6 2.3497 -0.7590 -3.5601 8 7 2.9152 -1.9426 -3.4518 9 14 2.1705 0.0404 -5.2388 10 1 2.8967 1.3357 -5.2503 11 1 2.7395 -0.8559 -6.2772 12 1 0.7324 0.2767 -5.5236 13 6 2.0399 -0.7212 1.2494 14 1 1.7996 -1.7823 1.1824 15 6 1.3808 -0.1198 2.4945 16 6 1.9965 -0.7484 3.7467 17 6 3.4936 -0.4346 3.7936 18 6 4.1776 -1.0446 2.5606 19 7 3.4955 -0.5517 1.3562 20 6 4.1926 0.0397 0.3659 21 8 3.6064 0.5503 -0.5692 22 6 5.6655 0.0675 0.4161 23 7 6.4213 -0.5464 1.3056 24 6 7.7036 -0.2962 1.0375 25 6 7.7583 0.4972 -0.0517 26 7 6.4817 0.7314 -0.4468 27 6 6.1056 1.5564 -1.5969 28 6 7.3031 2.4269 -1.9925 29 6 8.5518 1.5513 -2.1321 30 6 8.9773 1.0507 -0.7451 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.4351 -1.5630 -1.1163 35 1 3.2392 -2.3996 -4.2436 36 1 1.5461 0.9574 2.5093 37 1 0.3102 -0.3238 2.4738 38 1 1.5120 -0.3401 4.6337 39 1 1.8525 -1.8284 3.7191 40 1 3.6391 0.6457 3.7961 41 1 3.9268 -0.8622 4.6978 42 1 4.1078 -2.1316 2.6010 43 1 5.2251 -0.7443 2.5361 44 1 8.5513 -0.6650 1.5959 45 1 5.8304 0.9137 -2.4333 46 1 5.2624 2.1932 -1.3297 47 1 7.4724 3.1806 -1.2235 48 1 7.0968 2.9188 -2.9431 49 1 9.3596 2.1367 -2.5712 50 1 8.3290 0.6991 -2.7741 51 1 9.7279 0.2673 -0.8509 52 1 9.3868 1.8776 -0.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731295233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:48 Heat of formation + Delta-G solvation = 80.546777 kcal Electronic energy + Delta-G solvation = -33477.663710 eV Core-core repulsion = 29480.028363 eV Total energy + Delta-G solvation = -3997.635348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26387 -39.81190 -36.76587 -36.65480 -35.07083 -32.85275 -32.45719 -32.13007 -30.44604 -29.73101 -28.04022 -27.66842 -25.20084 -24.29062 -24.11087 -22.74162 -22.37193 -21.70184 -20.57932 -19.85247 -19.20856 -18.62168 -17.01632 -16.43099 -15.94211 -15.71582 -15.23535 -14.84482 -14.54216 -14.32220 -14.25896 -14.06931 -13.81855 -13.78711 -13.67230 -13.37005 -13.20445 -13.00945 -12.88524 -12.74828 -12.26425 -12.04496 -11.91734 -11.87837 -11.22864 -11.18960 -11.12929 -11.10624 -10.94003 -10.89177 -10.74120 -10.62939 -10.56677 -10.42928 -10.17623 -9.70845 -9.44009 -9.41973 -9.10347 -8.72623 -8.41636 -8.06402 -7.87932 -6.50137 -5.52096 -2.72763 1.87403 2.78602 2.94660 3.51452 3.56563 3.57302 3.67814 4.04711 4.50708 4.60070 4.68030 4.70778 4.75963 4.85331 5.05685 5.12148 5.20499 5.31228 5.36375 5.37932 5.43033 5.47108 5.63251 5.65305 5.71822 5.76868 5.77010 5.85352 5.85998 5.90430 5.91474 5.97358 6.05537 6.12338 6.16801 6.20380 6.24421 6.31547 6.36169 6.43791 6.50475 6.60255 6.68640 6.82560 6.90540 7.05385 7.15175 7.31870 7.49765 7.90226 7.97956 8.19091 8.64589 8.97094 9.75663 10.34396 10.69719 11.71688 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.006607 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.339482 B = 4236.685511 C = 7394.610586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.062 0.938 4 N -0.692 5.692 5 C -0.185 4.185 6 H 0.063 0.937 7 C -0.026 4.026 8 N -0.942 5.942 9 Si 0.895 3.105 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.291 1.291 13 C 0.150 3.850 14 H 0.067 0.933 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.131 4.131 18 C 0.077 3.923 19 N -0.593 5.593 20 C 0.563 3.437 21 O -0.439 6.439 22 C 0.176 3.824 23 N -0.459 5.459 24 C -0.032 4.032 25 C -0.016 4.016 26 N -0.403 5.403 27 C 0.105 3.895 28 C -0.134 4.134 29 C -0.128 4.128 30 C -0.043 4.043 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.142 0.858 44 H 0.170 0.830 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.087 0.913 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 6.627 12.668 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.079 0.921 4 N -0.332 5.332 5 C -0.317 4.317 6 H 0.081 0.919 7 C -0.220 4.220 8 N -0.593 5.593 9 Si 0.728 3.272 10 H -0.219 1.219 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.046 3.954 14 H 0.085 0.915 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.170 4.170 18 C -0.046 4.046 19 N -0.329 5.329 20 C 0.345 3.655 21 O -0.306 6.306 22 C -0.085 4.085 23 N -0.182 5.182 24 C -0.183 4.183 25 C -0.136 4.136 26 N -0.083 5.083 27 C -0.016 4.016 28 C -0.172 4.172 29 C -0.165 4.165 30 C -0.082 4.082 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.211 0.789 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.159 0.841 44 H 0.187 0.813 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.105 0.895 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.738 6.676 12.424 16.591 hybrid contribution 0.374 0.298 -1.602 1.672 sum 9.112 6.974 10.822 15.772 Atomic orbital electron populations 1.22554 0.99673 1.00693 0.99942 1.20506 0.90514 0.96974 0.85099 0.92073 1.42327 1.69671 1.19968 1.01247 1.18982 1.29000 0.99830 0.83931 0.91914 1.24558 1.03053 0.97305 0.97036 1.69643 1.47406 1.14672 1.27607 0.86414 0.77387 0.77983 0.85370 1.21930 1.22191 1.21800 1.21504 0.78425 0.99698 0.95741 0.91509 1.21987 0.99858 1.00551 0.94088 1.21547 0.95866 1.00759 0.97586 1.21985 0.95628 1.01062 0.98293 1.22724 1.01151 0.98101 0.82612 1.47356 1.06870 1.60167 1.18531 1.16622 0.82426 0.83092 0.83316 1.91228 1.66692 1.41052 1.31596 1.23037 0.94328 0.99862 0.91236 1.70042 1.02287 1.21990 1.23851 1.21950 0.94959 1.03064 0.98328 1.21174 0.86195 1.05771 1.00443 1.44905 1.05633 1.35373 1.22413 1.22143 0.98234 0.94046 0.87225 1.21929 0.94234 0.98092 1.02932 1.21682 0.97670 1.00190 0.96993 1.20224 0.92688 1.00474 0.94766 0.92721 0.93698 0.94370 0.78905 0.94186 0.91741 0.90692 0.92417 0.92049 0.92197 0.91558 0.92701 0.84099 0.81273 0.88315 0.87928 0.91140 0.89388 0.90668 0.91067 0.89504 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 8.75 37.16 0.33 -2.83 16 2 C 0.18 3.72 1.80 -67.93 -0.12 3.59 16 3 H 0.06 1.39 6.36 -51.93 -0.33 1.06 16 4 N -0.69 -17.70 3.08 -53.43 -0.16 -17.87 16 5 C -0.19 -5.23 8.31 -15.06 -0.13 -5.35 16 6 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 8 N -0.94 -29.34 13.06 55.49 0.72 -28.61 16 9 Si 0.90 23.17 29.55 -169.99 -5.02 18.15 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 13 C 0.15 2.64 2.56 -67.60 -0.17 2.47 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.13 -1.75 4.59 -26.62 -0.12 -1.88 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 17 C -0.13 -1.63 6.10 -26.39 -0.16 -1.79 16 18 C 0.08 1.17 6.13 -3.48 -0.02 1.15 16 19 N -0.59 -10.69 2.97 -166.22 -0.49 -11.18 16 20 C 0.56 11.57 7.32 -12.53 -0.09 11.48 16 21 O -0.44 -10.23 8.45 5.27 0.04 -10.19 16 22 C 0.18 3.33 7.54 -154.85 -1.17 2.17 16 23 N -0.46 -7.88 7.66 -11.45 -0.09 -7.97 16 24 C -0.03 -0.46 11.82 -18.08 -0.21 -0.67 16 25 C -0.02 -0.23 6.57 -82.06 -0.54 -0.77 16 26 N -0.40 -6.84 3.14 -110.09 -0.35 -7.19 16 27 C 0.10 1.68 6.04 -3.94 -0.02 1.66 16 28 C -0.13 -1.53 5.93 -26.53 -0.16 -1.69 16 29 C -0.13 -1.30 5.96 -26.41 -0.16 -1.46 16 30 C -0.04 -0.44 6.31 -27.61 -0.17 -0.61 16 31 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.59 6.46 -51.93 -0.34 0.26 16 34 H 0.38 10.65 7.65 -40.82 -0.31 10.34 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.97 6.69 -51.93 -0.35 0.62 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.14 2.25 4.11 -63.75 -0.26 1.99 16 44 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 46 H 0.10 1.75 7.43 -51.93 -0.39 1.36 16 47 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 51 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -33.00 389.24 -11.35 -44.35 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.69 Total: 11.63 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -3.18 Total: 3.01 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -0.37 Total: -72.82 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.04 Total: -10.19 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.00 -11.35 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731295233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.896 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds