Wall clock time and date at job start Wed Apr 1 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46714 * 2 1 4 4 N 1.46490 * 109.47211 * 239.99562 * 2 1 3 5 5 C 1.36942 * 120.00047 * 71.21325 * 4 2 1 6 6 H 1.07996 * 119.99575 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00288 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99794 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00187 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47241 * 59.99890 * 9 7 5 11 11 H 1.48501 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47158 * 300.00169 * 9 7 5 13 13 C 1.53001 * 109.46674 * 119.99446 * 2 1 3 14 14 H 1.09006 * 109.58366 * 68.04047 * 13 2 1 15 15 C 1.53183 * 109.59229 * 307.60785 * 13 2 1 16 16 C 1.53042 * 109.31352 * 185.57995 * 15 13 2 17 17 C 1.53035 * 109.53966 * 61.36662 * 16 15 13 18 18 C 1.53624 * 109.24079 * 298.50956 * 17 16 15 19 19 N 1.46926 * 109.58414 * 188.31614 * 13 2 1 20 20 C 1.34774 * 120.63394 * 353.37848 * 19 13 2 21 21 O 1.21610 * 119.99822 * 6.88017 * 20 19 13 22 22 C 1.47409 * 120.00704 * 186.89005 * 20 19 13 23 23 N 1.31881 * 125.93278 * 6.33216 * 22 20 19 24 24 C 1.33366 * 109.15490 * 179.97438 * 23 22 20 25 25 C 1.34870 * 108.15912 * 359.97438 * 24 23 22 26 26 N 1.35667 * 107.37233 * 0.09094 * 25 24 23 27 27 C 1.46448 * 124.57993 * 179.79984 * 26 25 24 28 28 C 1.53242 * 108.78901 * 342.86829 * 27 26 25 29 29 C 1.53148 * 109.62978 * 50.42396 * 28 27 26 30 30 C 1.50769 * 128.32634 * 180.11204 * 25 24 23 31 31 H 1.08996 * 109.46944 * 60.00122 * 1 2 3 32 32 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46924 * 300.00447 * 1 2 3 34 34 H 0.97001 * 120.00798 * 251.21542 * 4 2 1 35 35 H 0.96995 * 120.00262 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.49840 * 305.53323 * 15 13 2 37 37 H 1.09001 * 109.49660 * 65.62314 * 15 13 2 38 38 H 1.09008 * 109.45778 * 181.38542 * 16 15 13 39 39 H 1.08998 * 109.45769 * 301.34252 * 16 15 13 40 40 H 1.09004 * 109.49885 * 58.58241 * 17 16 15 41 41 H 1.09001 * 109.49932 * 178.65173 * 17 16 15 42 42 H 1.09000 * 109.74053 * 295.11882 * 18 17 16 43 43 H 1.09002 * 109.66713 * 174.54916 * 18 17 16 44 44 H 1.07999 * 125.92169 * 179.97438 * 24 23 22 45 45 H 1.09009 * 109.58946 * 102.57959 * 27 26 25 46 46 H 1.08998 * 109.59177 * 223.02072 * 27 26 25 47 47 H 1.09001 * 109.39172 * 290.40474 * 28 27 26 48 48 H 1.09001 * 109.48990 * 170.50164 * 28 27 26 49 49 H 1.08994 * 109.50895 * 170.66063 * 29 28 27 50 50 H 1.09000 * 109.50663 * 50.55970 * 29 28 27 51 51 H 1.09007 * 109.72833 * 44.60101 * 30 25 24 52 52 H 1.08995 * 109.72701 * 283.91908 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 1.8865 -0.1048 -2.4268 6 1 1.4229 0.8665 -2.5155 7 6 2.3497 -0.7590 -3.5601 8 7 2.9152 -1.9426 -3.4518 9 14 2.1705 0.0404 -5.2388 10 1 2.8967 1.3357 -5.2503 11 1 2.7395 -0.8559 -6.2772 12 1 0.7324 0.2767 -5.5236 13 6 2.0399 -0.7212 1.2494 14 1 1.7996 -1.7823 1.1824 15 6 1.3808 -0.1198 2.4945 16 6 1.9965 -0.7484 3.7467 17 6 3.4936 -0.4346 3.7936 18 6 4.1776 -1.0446 2.5606 19 7 3.4955 -0.5517 1.3562 20 6 4.1926 0.0397 0.3659 21 8 3.6064 0.5503 -0.5692 22 6 5.6655 0.0675 0.4161 23 7 6.4213 -0.5464 1.3056 24 6 7.7036 -0.2962 1.0375 25 6 7.7583 0.4972 -0.0517 26 7 6.4817 0.7314 -0.4468 27 6 6.1056 1.5564 -1.5969 28 6 7.3031 2.4269 -1.9925 29 6 8.5518 1.5513 -2.1321 30 6 8.9773 1.0507 -0.7451 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.4351 -1.5630 -1.1163 35 1 3.2392 -2.3996 -4.2436 36 1 1.5461 0.9574 2.5093 37 1 0.3102 -0.3238 2.4738 38 1 1.5120 -0.3401 4.6337 39 1 1.8525 -1.8284 3.7191 40 1 3.6391 0.6457 3.7961 41 1 3.9268 -0.8622 4.6978 42 1 4.1078 -2.1316 2.6010 43 1 5.2251 -0.7443 2.5361 44 1 8.5513 -0.6650 1.5959 45 1 5.8304 0.9137 -2.4333 46 1 5.2624 2.1932 -1.3297 47 1 7.4724 3.1806 -1.2235 48 1 7.0968 2.9188 -2.9431 49 1 9.3596 2.1367 -2.5712 50 1 8.3290 0.6991 -2.7741 51 1 9.7279 0.2673 -0.8509 52 1 9.3868 1.8776 -0.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731295233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:47 Heat of formation + Delta-G solvation = 61.467282 kcal Electronic energy + Delta-G solvation = -33478.491059 eV Core-core repulsion = 29480.028363 eV Total energy + Delta-G solvation = -3998.462697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.51131 -41.26395 -38.16708 -37.75095 -36.80388 -34.22064 -33.94942 -33.59457 -31.70870 -31.36073 -29.45514 -29.10158 -26.61772 -25.91553 -25.36254 -24.17235 -23.72267 -22.83222 -21.90696 -21.28741 -20.51841 -19.85907 -18.95144 -17.88655 -17.23784 -17.08002 -16.75248 -16.57429 -15.85864 -15.59585 -15.51159 -15.28905 -15.10656 -15.02724 -14.93224 -14.68303 -14.59171 -14.46318 -14.24196 -14.08527 -13.75893 -13.55565 -13.45390 -13.01554 -12.99844 -12.78638 -12.59144 -12.44968 -12.20608 -12.11547 -12.05122 -11.91790 -11.88268 -11.71740 -11.64659 -11.52000 -11.23765 -10.83604 -10.73294 -10.38743 -9.98319 -9.51385 -9.19098 -8.57269 -7.78691 -4.97539 0.52906 1.40181 1.43307 1.49053 1.51224 1.73236 2.31952 2.57558 2.62807 3.37782 3.52320 3.54486 3.59955 3.71920 3.83101 3.85358 3.89176 4.08909 4.18540 4.22024 4.28246 4.32075 4.35570 4.40321 4.46526 4.51963 4.65402 4.66784 4.75594 4.79320 4.84991 4.88703 4.93846 4.96682 5.01955 5.04446 5.10199 5.12314 5.16934 5.20289 5.24143 5.27393 5.41349 5.45888 5.51830 5.57339 5.61086 5.77440 5.95569 6.10242 6.40724 6.56565 6.87951 7.43873 7.49222 8.24502 8.48588 9.46067 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.006607 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.339482 B = 4236.685511 C = 7394.610586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 H 0.041 0.959 4 N -0.698 5.698 5 C -0.170 4.170 6 H 0.058 0.942 7 C -0.090 4.090 8 N -0.979 5.979 9 Si 0.955 3.045 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.283 1.283 13 C 0.151 3.849 14 H 0.056 0.944 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.073 3.927 19 N -0.592 5.592 20 C 0.556 3.444 21 O -0.486 6.486 22 C 0.125 3.875 23 N -0.458 5.458 24 C -0.043 4.043 25 C -0.006 4.006 26 N -0.411 5.411 27 C 0.108 3.892 28 C -0.125 4.125 29 C -0.125 4.125 30 C -0.041 4.041 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.360 0.640 35 H 0.239 0.761 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.137 0.863 44 H 0.208 0.792 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.048 0.952 51 H 0.111 0.889 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.212 7.862 14.921 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.058 0.942 4 N -0.336 5.336 5 C -0.303 4.303 6 H 0.076 0.924 7 C -0.280 4.280 8 N -0.634 5.634 9 Si 0.787 3.213 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.210 1.210 13 C 0.048 3.952 14 H 0.074 0.926 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.049 4.049 19 N -0.328 5.328 20 C 0.340 3.660 21 O -0.357 6.357 22 C -0.133 4.133 23 N -0.181 5.181 24 C -0.194 4.194 25 C -0.126 4.126 26 N -0.091 5.091 27 C -0.014 4.014 28 C -0.162 4.162 29 C -0.163 4.163 30 C -0.079 4.079 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.191 0.809 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.225 0.775 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.130 0.870 50 H 0.067 0.933 51 H 0.129 0.871 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.380 7.936 14.749 19.704 hybrid contribution -0.037 -0.061 -2.173 2.174 sum 10.343 7.875 12.577 18.088 Atomic orbital electron populations 1.22399 0.97690 1.00822 1.00799 1.20581 0.91647 0.95794 0.84951 0.94168 1.42395 1.69841 1.19304 1.02042 1.19186 1.26821 0.99066 0.85188 0.92389 1.25212 1.04242 0.98158 1.00341 1.69821 1.49651 1.16268 1.27675 0.85433 0.77479 0.77089 0.81286 1.21247 1.22773 1.21004 1.21487 0.78763 0.98836 0.96148 0.92604 1.21947 1.00531 1.00183 0.92977 1.21539 0.95345 1.01009 0.97329 1.21937 0.95952 1.00665 0.97556 1.22870 1.01216 0.98051 0.82742 1.47543 1.07093 1.59278 1.18842 1.17054 0.83535 0.82271 0.83103 1.91185 1.67830 1.43546 1.33113 1.22818 0.93987 1.02941 0.93566 1.70011 1.03487 1.21222 1.23337 1.22675 0.94877 1.03007 0.98888 1.22084 0.86410 1.04230 0.99868 1.45083 1.06613 1.35217 1.22189 1.22027 1.00158 0.93446 0.85751 1.21945 0.92706 0.97669 1.03898 1.21711 0.97866 0.99604 0.97125 1.20491 0.90969 1.02098 0.94294 0.94837 0.93840 0.90464 0.80906 0.95209 0.92003 0.89035 0.89539 0.91627 0.92624 0.88850 0.92944 0.84635 0.77535 0.92542 0.90144 0.89424 0.88239 0.87017 0.93293 0.87116 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 8.75 71.98 0.63 -5.30 16 2 C 0.18 7.72 1.80 45.00 0.08 7.80 16 3 H 0.04 1.94 6.36 -2.39 -0.02 1.92 16 4 N -0.70 -37.82 3.08 -322.95 -0.99 -38.82 16 5 C -0.17 -10.07 8.31 84.03 0.70 -9.37 16 6 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 7 C -0.09 -5.52 5.50 84.86 0.47 -5.06 16 8 N -0.98 -64.31 13.06 21.65 0.28 -64.02 16 9 Si 0.96 49.77 29.55 68.60 2.03 51.79 16 10 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.30 -15.82 7.11 99.48 0.71 -15.12 16 12 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 13 C 0.15 5.42 2.56 44.97 0.12 5.53 16 14 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 15 C -0.12 -3.08 4.59 30.67 0.14 -2.94 16 16 C -0.11 -2.41 5.88 30.62 0.18 -2.23 16 17 C -0.12 -2.77 6.10 30.82 0.19 -2.59 16 18 C 0.07 2.21 6.13 86.51 0.53 2.74 16 19 N -0.59 -22.11 2.97 -798.05 -2.37 -24.47 16 20 C 0.56 24.36 7.32 86.66 0.63 24.99 16 21 O -0.49 -24.48 8.45 -4.06 -0.03 -24.51 16 22 C 0.13 4.96 7.54 136.40 1.03 5.99 16 23 N -0.46 -15.75 7.66 -190.13 -1.46 -17.20 16 24 C -0.04 -1.18 11.82 83.69 0.99 -0.19 16 25 C -0.01 -0.17 6.57 41.21 0.27 0.10 16 26 N -0.41 -14.39 3.14 -502.21 -1.58 -15.96 16 27 C 0.11 3.70 6.04 86.47 0.52 4.23 16 28 C -0.12 -2.73 5.93 30.72 0.18 -2.55 16 29 C -0.13 -2.25 5.96 30.80 0.18 -2.07 16 30 C -0.04 -0.67 6.31 30.03 0.19 -0.48 16 31 H 0.03 1.38 7.93 -2.39 -0.02 1.36 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.28 6.46 -2.38 -0.02 2.27 16 34 H 0.36 21.67 7.65 -92.71 -0.71 20.96 16 35 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 2.10 6.69 -2.39 -0.02 2.09 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.14 4.32 4.11 -25.73 -0.11 4.21 16 44 H 0.21 3.87 8.06 -2.91 -0.02 3.84 16 45 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.08 3.03 7.43 -2.39 -0.02 3.01 16 47 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 51 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.68 389.24 3.03 -75.66 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.11 Total: 38.94 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 7.03 Total: 18.60 kcal Atomic # 7 Polarization: -154.37 SS G_CDS: -6.11 Total: -160.48 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.03 Total: -24.51 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.79 kcal Total: -78.68 3.03 -75.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731295233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.126 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds