Wall clock time and date at job start Wed Apr 1 2020 03:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47396 * 2 1 4 4 N 1.46507 * 109.47137 * 119.99719 * 2 1 3 5 5 C 1.36934 * 120.00204 * 274.99719 * 4 2 1 6 6 H 1.08004 * 119.99645 * 0.02562 * 5 4 2 7 7 C 1.38804 * 119.99920 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00466 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 119.99842 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46822 * 60.00211 * 9 7 5 11 11 H 1.48498 * 109.47019 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47122 * 300.00171 * 9 7 5 13 13 C 1.52997 * 109.47052 * 240.00028 * 2 1 3 14 14 C 1.53032 * 109.46273 * 59.99793 * 13 2 1 15 15 C 1.53188 * 109.31509 * 181.38622 * 14 13 2 16 16 N 1.46922 * 108.77717 * 305.36608 * 15 14 13 17 17 C 1.34779 * 120.63169 * 233.58482 * 16 15 14 18 18 O 1.21570 * 119.99992 * 354.64041 * 17 16 15 19 19 C 1.47715 * 119.99920 * 174.91660 * 17 16 15 20 20 C 1.41500 * 126.51766 * 173.36422 * 19 17 16 21 21 C 1.35361 * 105.50511 * 179.87641 * 20 19 17 22 22 C 1.50693 * 126.38877 * 180.10195 * 21 20 19 23 23 C 1.53005 * 117.49796 * 33.95181 * 22 21 20 24 24 C 1.53002 * 117.50202 * 325.32943 * 22 21 20 25 25 N 1.35032 * 107.22629 * 0.37893 * 21 20 19 26 26 C 1.46502 * 124.88810 * 179.76822 * 25 21 20 27 27 N 1.28468 * 110.23379 * 359.74855 * 25 21 20 28 28 C 1.46930 * 118.74030 * 53.85971 * 16 15 14 29 29 C 1.53045 * 109.45983 * 180.02562 * 13 2 1 30 30 H 1.09006 * 109.46928 * 300.00409 * 1 2 3 31 31 H 1.08993 * 109.46988 * 59.99836 * 1 2 3 32 32 H 1.09000 * 109.47139 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99450 * 95.00598 * 4 2 1 34 34 H 0.96996 * 120.00234 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.44685 * 300.02976 * 13 2 1 36 36 H 1.09007 * 109.50113 * 61.43661 * 14 13 2 37 37 H 1.08998 * 109.50128 * 301.33937 * 14 13 2 38 38 H 1.09001 * 109.58836 * 185.58080 * 15 14 13 39 39 H 1.09004 * 109.58951 * 65.15440 * 15 14 13 40 40 H 1.08004 * 127.24962 * 359.97438 * 20 19 17 41 41 H 1.09004 * 115.55444 * 179.65267 * 22 21 20 42 42 H 1.08998 * 117.49541 * 359.97438 * 23 22 21 43 43 H 1.09001 * 117.50070 * 145.02098 * 23 22 21 44 44 H 1.09000 * 117.49899 * 214.97582 * 24 22 21 45 45 H 1.09002 * 117.49267 * 359.97355 * 24 22 21 46 46 H 1.08994 * 109.47367 * 270.00049 * 26 25 21 47 47 H 1.09002 * 109.46690 * 30.00100 * 26 25 21 48 48 H 1.09000 * 109.47637 * 149.99665 * 26 25 21 49 49 H 1.08995 * 109.58661 * 65.92543 * 28 16 15 50 50 H 1.08993 * 109.58583 * 186.35672 * 28 16 15 51 51 H 1.08996 * 109.49700 * 298.56025 * 29 13 2 52 52 H 1.08997 * 109.49717 * 58.63205 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1492 -0.0074 2.3758 6 1 1.8920 1.0404 2.4243 7 6 2.6124 -0.6616 3.5090 8 7 2.9263 -1.9384 3.4497 9 14 2.7916 0.2705 5.1179 10 1 1.4694 0.8073 5.5288 11 1 3.3004 -0.6479 6.1681 12 1 3.7467 1.3929 4.9360 13 6 2.0400 -0.7212 -1.2492 14 6 1.5297 0.0003 -2.4986 15 6 2.0134 -0.7444 -3.7468 16 7 3.4752 -0.8772 -3.6815 17 6 4.2491 -0.4587 -4.7025 18 8 3.7362 -0.0560 -5.7286 19 6 5.7204 -0.4949 -4.5770 20 6 6.6597 -0.2164 -5.5980 21 6 7.8754 -0.3724 -5.0236 22 6 9.2118 -0.1868 -5.6949 23 6 9.3171 0.8946 -6.7722 24 6 9.3234 -0.5832 -7.1684 25 7 7.6675 -0.7314 -3.7386 26 6 8.7258 -1.0047 -2.7632 27 7 6.4081 -0.7983 -3.4942 28 6 4.0769 -1.4807 -2.4846 29 6 3.5704 -0.7216 -1.2487 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1526 34 1 3.2497 -2.3956 4.2417 35 1 1.6760 -1.7487 -1.2491 36 1 1.9136 1.0204 -2.5120 37 1 0.4400 0.0214 -2.4870 38 1 1.7372 -0.1812 -4.6383 39 1 1.5577 -1.7340 -3.7815 40 1 6.4507 0.0634 -6.6200 41 1 10.0832 -0.3531 -5.0615 42 1 8.4196 1.4714 -6.9956 43 1 10.2578 1.4399 -6.8477 44 1 10.2683 -1.0100 -7.5046 45 1 8.4302 -0.9787 -7.6521 46 1 8.9876 -2.0622 -2.7978 47 1 9.6040 -0.4050 -3.0023 48 1 8.3734 -0.7503 -1.7636 49 1 3.7861 -2.5290 -2.4184 50 1 5.1625 -1.4034 -2.5430 51 1 3.9345 0.3054 -1.2742 52 1 3.9337 -1.2142 -0.3468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731994889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:34 Heat of formation + Delta-G solvation = 70.375851 kcal Electronic energy + Delta-G solvation = -31006.683346 eV Core-core repulsion = 27008.606954 eV Total energy + Delta-G solvation = -3998.076392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.82808 -41.07295 -39.14112 -38.13594 -36.88116 -34.82558 -34.37729 -32.54605 -32.06882 -31.36814 -30.04338 -28.44895 -26.70054 -25.75398 -24.81009 -23.90084 -23.57735 -23.21624 -22.09903 -21.24882 -21.00938 -20.02498 -19.05433 -18.32859 -17.76552 -17.31895 -16.89142 -16.73409 -16.17507 -15.98475 -15.66446 -15.51441 -15.31591 -15.10517 -14.88310 -14.66956 -14.61637 -14.22575 -13.99731 -13.76926 -13.50926 -13.44681 -13.42668 -13.02998 -12.87804 -12.79294 -12.73241 -12.38944 -12.30514 -12.25287 -12.21781 -12.01225 -11.95803 -11.74087 -11.48323 -11.39085 -11.35433 -11.20446 -10.95201 -10.63623 -10.17168 -9.77621 -9.63407 -8.94277 -7.90005 -5.16470 0.42918 0.97807 1.44971 1.46858 1.48978 1.54924 2.00861 2.27370 2.58080 3.04394 3.16414 3.42954 3.45759 3.64992 3.77401 3.87820 3.90718 3.98693 4.09913 4.11016 4.18317 4.26630 4.34910 4.38335 4.39567 4.46019 4.54676 4.56456 4.60316 4.65181 4.70981 4.80275 4.83394 4.86419 4.91781 4.95628 5.03923 5.05249 5.07573 5.14346 5.19223 5.23069 5.28677 5.32826 5.39991 5.49060 5.53978 5.62156 5.68418 5.91649 6.29048 6.32582 6.81316 7.09467 7.38727 8.16505 8.40583 9.33154 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.002659 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.898157 B =10527.474977 C =12300.128103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.032 0.968 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.281 1.281 13 C -0.081 4.081 14 C -0.116 4.116 15 C 0.112 3.888 16 N -0.594 5.594 17 C 0.597 3.403 18 O -0.572 6.572 19 C -0.035 4.035 20 C -0.198 4.198 21 C 0.061 3.939 22 C -0.108 4.108 23 C -0.159 4.159 24 C -0.156 4.156 25 N -0.277 5.277 26 C 0.070 3.930 27 N -0.272 5.272 28 C 0.081 3.919 29 C -0.104 4.104 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.126 0.874 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.137 0.863 51 H 0.044 0.956 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 1.727 -21.615 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.050 0.950 4 N -0.371 5.371 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.208 1.208 11 H -0.222 1.222 12 H -0.207 1.207 13 C -0.100 4.100 14 C -0.154 4.154 15 C -0.009 4.009 16 N -0.325 5.325 17 C 0.385 3.615 18 O -0.451 6.451 19 C -0.193 4.193 20 C -0.226 4.226 21 C -0.064 4.064 22 C -0.127 4.127 23 C -0.197 4.197 24 C -0.193 4.193 25 N -0.064 5.064 26 C -0.069 4.069 27 N -0.108 5.108 28 C -0.042 4.042 29 C -0.142 4.142 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.107 0.893 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.144 0.856 48 H 0.115 0.885 49 H 0.086 0.914 50 H 0.154 0.846 51 H 0.063 0.937 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.656 1.742 -20.782 25.489 hybrid contribution -0.148 0.185 0.759 0.795 sum 14.508 1.928 -20.023 24.801 Atomic orbital electron populations 1.22349 0.97786 1.00906 1.00582 1.20421 0.92662 0.94549 0.85842 0.95015 1.42548 1.78337 1.10213 1.05998 1.19504 1.34526 0.93898 0.88524 0.91378 1.25423 1.03331 0.96856 1.01019 1.69791 1.52829 1.09991 1.29245 0.85330 0.77777 0.77383 0.80000 1.20820 1.22177 1.20707 1.21285 0.95018 0.99672 0.94061 1.21928 1.02141 0.98780 0.92592 1.21759 0.78306 1.01711 0.99163 1.48062 1.07516 1.59241 1.17643 1.17278 0.84560 0.76879 0.82786 1.90712 1.74495 1.50139 1.29773 1.21796 0.94055 1.10648 0.92806 1.21474 0.90138 1.10108 1.00899 1.20874 0.96634 1.03695 0.85179 1.20519 0.91614 1.08180 0.92403 1.23173 1.04570 0.91958 0.99962 1.23168 1.04629 0.97936 0.93587 1.45906 1.04593 1.46133 1.09729 1.22640 0.87553 1.05223 0.91478 1.73150 0.91360 1.21375 1.24950 1.22811 1.02801 0.95962 0.82577 1.21700 0.95740 0.99741 0.97053 0.95029 0.90759 0.93679 0.79490 0.94185 0.91352 0.92457 0.88293 0.89293 0.89916 0.82227 0.83890 0.89263 0.85882 0.85816 0.89133 0.87695 0.85558 0.88506 0.91442 0.84619 0.93720 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.14 71.98 0.66 -4.88 16 2 C 0.17 6.86 2.47 44.99 0.11 6.98 16 3 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 4 N -0.73 -36.51 4.41 -322.94 -1.42 -37.94 16 5 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 7 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 8 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 9 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C -0.08 -2.66 1.79 -10.77 -0.02 -2.68 16 14 C -0.12 -3.15 5.04 30.67 0.15 -3.00 16 15 C 0.11 3.02 6.41 86.36 0.55 3.57 16 16 N -0.59 -18.08 2.97 -821.61 -2.44 -20.51 16 17 C 0.60 19.81 7.70 86.75 0.67 20.48 16 18 O -0.57 -21.30 16.37 -3.93 -0.06 -21.37 16 19 C -0.04 -1.06 6.88 42.46 0.29 -0.76 16 20 C -0.20 -4.90 9.86 22.41 0.22 -4.68 16 21 C 0.06 1.17 6.60 41.40 0.27 1.44 16 22 C -0.11 -1.14 5.94 -11.54 -0.07 -1.21 16 23 C -0.16 -1.46 10.05 30.60 0.31 -1.15 16 24 C -0.16 -1.37 10.05 30.60 0.31 -1.06 16 25 N -0.28 -5.62 3.70 -355.94 -1.32 -6.94 16 26 C 0.07 0.75 11.05 127.77 1.41 2.16 16 27 N -0.27 -7.44 8.36 -48.17 -0.40 -7.85 16 28 C 0.08 2.47 6.36 86.51 0.55 3.02 16 29 C -0.10 -3.59 5.24 30.82 0.16 -3.43 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 2.09 6.40 -2.39 -0.02 2.07 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.37 19.95 7.58 -92.71 -0.70 19.25 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.10 2.29 6.36 -2.39 -0.02 2.28 16 38 H 0.09 2.43 7.04 -2.39 -0.02 2.42 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 41 H 0.14 0.75 7.17 -2.38 -0.02 0.73 16 42 H 0.09 1.08 7.95 -2.39 -0.02 1.06 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.09 1.03 7.96 -2.39 -0.02 1.01 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.13 0.53 7.12 -2.39 -0.02 0.51 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.14 4.15 3.73 -79.34 -0.30 3.85 16 51 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.06 2.45 7.40 -2.39 -0.02 2.43 16 Total: -1.00 -74.11 410.29 3.49 -70.62 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.07 Total: 35.14 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.88 Total: -1.10 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -5.30 Total: -131.77 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.11 3.49 -70.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731994889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.000 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds