Wall clock time and date at job start Wed Apr 1 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47456 * 2 1 4 4 N 1.46501 * 109.47003 * 240.00413 * 2 1 3 5 5 C 1.36937 * 119.99834 * 84.99881 * 4 2 1 6 6 H 1.07997 * 120.00513 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00198 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99906 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00418 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47504 * 89.99624 * 9 7 5 11 11 H 1.48508 * 109.47290 * 209.99800 * 9 7 5 12 12 H 1.48494 * 109.47195 * 329.99745 * 9 7 5 13 13 C 1.53002 * 109.47480 * 120.00478 * 2 1 3 14 14 C 1.53038 * 109.45905 * 60.02603 * 13 2 1 15 15 C 1.53196 * 109.31150 * 178.60281 * 14 13 2 16 16 N 1.46921 * 108.76385 * 54.65251 * 15 14 13 17 17 C 1.34780 * 120.62663 * 126.36027 * 16 15 14 18 18 O 1.21570 * 120.00391 * 353.06524 * 17 16 15 19 19 C 1.47717 * 119.99967 * 173.05708 * 17 16 15 20 20 C 1.41499 * 126.51879 * 172.93725 * 19 17 16 21 21 C 1.35359 * 105.50246 * 179.84826 * 20 19 17 22 22 C 1.50703 * 126.38673 * 180.14274 * 21 20 19 23 23 C 1.53001 * 117.49512 * 33.94659 * 22 21 20 24 24 C 1.53003 * 117.49631 * 325.32579 * 22 21 20 25 25 N 1.35031 * 107.22947 * 0.41389 * 21 20 19 26 26 C 1.46497 * 124.88583 * 179.72488 * 25 21 20 27 27 N 1.28472 * 110.23026 * 359.72652 * 25 21 20 28 28 C 1.46921 * 118.74246 * 306.38879 * 16 15 14 29 29 C 1.53035 * 109.45721 * 299.97066 * 13 2 1 30 30 H 1.08997 * 109.46522 * 299.99379 * 1 2 3 31 31 H 1.08999 * 109.46599 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47130 * 59.99322 * 1 2 3 33 33 H 0.96993 * 120.00118 * 264.99351 * 4 2 1 34 34 H 0.96993 * 120.00187 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.45559 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.49984 * 298.56525 * 14 13 2 37 37 H 1.08997 * 109.49504 * 58.66318 * 14 13 2 38 38 H 1.09003 * 109.59559 * 294.87070 * 15 14 13 39 39 H 1.09000 * 109.70004 * 174.50377 * 15 14 13 40 40 H 1.08005 * 127.24367 * 0.02562 * 20 19 17 41 41 H 1.08996 * 115.55342 * 179.65367 * 22 21 20 42 42 H 1.09004 * 117.50438 * 359.97438 * 23 22 21 43 43 H 1.09006 * 117.49802 * 145.02456 * 23 22 21 44 44 H 1.08995 * 117.49399 * 214.97518 * 24 22 21 45 45 H 1.09000 * 117.49659 * 359.97422 * 24 22 21 46 46 H 1.09004 * 109.47135 * 270.02642 * 26 25 21 47 47 H 1.09000 * 109.47345 * 30.02538 * 26 25 21 48 48 H 1.09006 * 109.47227 * 150.02679 * 26 25 21 49 49 H 1.09001 * 109.58599 * 293.81597 * 28 16 15 50 50 H 1.09007 * 109.70416 * 173.46702 * 28 16 15 51 51 H 1.08994 * 109.50219 * 301.33601 * 29 13 2 52 52 H 1.09008 * 109.49613 * 61.40280 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0407 -2.4241 7 6 2.6112 -0.6616 -3.5094 8 7 2.9243 -1.9388 -3.4504 9 14 2.7889 0.2701 -5.1185 10 1 4.1511 0.8553 -5.2040 11 1 2.5780 -0.6613 -6.2558 12 1 1.7788 1.3572 -5.1752 13 6 2.0401 -0.7213 1.2492 14 6 1.5304 -2.1644 1.2485 15 6 2.0716 -2.8934 2.4824 16 7 1.7088 -2.1261 3.6816 17 6 1.0554 -2.7157 4.7024 18 8 0.6494 -3.8557 4.5867 19 6 0.8327 -1.9767 5.9618 20 6 0.0508 -2.4031 7.0614 21 6 0.1426 -1.4106 7.9772 22 6 -0.5128 -1.3826 9.3340 23 6 -0.6661 -2.7141 10.0720 24 6 -1.8929 -2.0300 9.4653 25 7 0.9261 -0.4476 7.4461 26 6 1.2768 0.8092 8.1121 27 7 1.3198 -0.7921 6.2727 28 6 2.0713 -0.7038 3.7468 29 6 1.5305 0.0006 2.4986 30 1 -0.3632 0.5137 0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8898 33 1 2.2491 -1.6316 -1.1527 34 1 3.2476 -2.3959 -4.2424 35 1 3.1301 -0.7208 1.2491 36 1 0.4407 -2.1653 1.2740 37 1 1.8742 -2.6711 0.3468 38 1 3.1566 -2.9726 2.4136 39 1 1.6353 -3.8906 2.5407 40 1 -0.5006 -3.3274 7.1520 41 1 -0.3145 -0.4944 9.9337 42 1 -0.2934 -3.6104 9.5761 43 1 -0.5686 -2.7019 11.1576 44 1 -2.6022 -1.5678 10.1517 45 1 -2.3269 -2.4757 8.5702 46 1 0.5345 1.5692 7.8679 47 1 1.2977 0.6552 9.1910 48 1 2.2590 1.1384 7.7730 49 1 3.1562 -0.6044 3.7812 50 1 1.6347 -0.2537 4.6385 51 1 1.8742 1.0349 2.4868 52 1 0.4407 -0.0205 2.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731994890.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:39 Heat of formation + Delta-G solvation = 70.171104 kcal Electronic energy + Delta-G solvation = -30836.190234 eV Core-core repulsion = 26838.104964 eV Total energy + Delta-G solvation = -3998.085271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.80593 -41.12579 -39.24680 -38.12617 -36.88112 -34.79698 -34.39784 -32.39108 -32.23871 -31.30035 -29.89093 -28.47455 -26.74181 -25.66687 -25.02394 -24.10778 -23.59246 -23.21530 -22.47749 -21.25611 -20.56424 -19.61275 -19.19851 -18.27351 -17.71886 -17.34732 -16.92949 -16.65024 -16.21712 -16.00751 -15.78372 -15.44556 -15.41243 -15.23493 -14.98801 -14.70263 -14.35446 -14.33034 -14.16991 -13.70776 -13.56385 -13.39168 -13.18176 -13.01426 -12.90629 -12.80517 -12.77791 -12.61577 -12.39014 -12.19029 -12.13077 -12.00771 -11.83587 -11.71818 -11.57197 -11.39558 -11.34960 -11.14649 -10.87765 -10.77911 -10.14948 -9.74288 -9.64737 -8.96478 -7.91094 -5.18266 0.43951 0.97947 1.46924 1.47453 1.48522 1.56718 1.98707 2.27435 2.57894 3.04895 3.15959 3.41890 3.47229 3.66362 3.81975 3.87290 3.91255 3.99272 4.09132 4.09741 4.14096 4.26730 4.34952 4.38294 4.41710 4.43001 4.55051 4.56350 4.64840 4.69973 4.71107 4.73811 4.83899 4.84657 4.91173 4.95636 5.03327 5.04679 5.04995 5.11199 5.20103 5.22269 5.28241 5.28750 5.36553 5.43372 5.54334 5.60995 5.70179 5.88598 6.31497 6.32808 6.81121 7.08865 7.37660 8.16699 8.39235 9.32582 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.002068 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.047734 B =13535.428649 C =14001.879642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 H 0.045 0.955 4 N -0.737 5.737 5 C -0.233 4.233 6 H 0.074 0.926 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.970 3.030 10 H -0.287 1.287 11 H -0.298 1.298 12 H -0.271 1.271 13 C -0.080 4.080 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.593 5.593 17 C 0.595 3.405 18 O -0.578 6.578 19 C -0.035 4.035 20 C -0.201 4.201 21 C 0.061 3.939 22 C -0.103 4.103 23 C -0.160 4.160 24 C -0.161 4.161 25 N -0.274 5.274 26 C 0.070 3.930 27 N -0.262 5.262 28 C 0.092 3.908 29 C -0.117 4.117 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.124 0.876 48 H 0.106 0.894 49 H 0.073 0.927 50 H 0.133 0.867 51 H 0.094 0.906 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 6.913 34.726 35.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.365 4.365 6 H 0.092 0.908 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.800 3.200 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.196 1.196 13 C -0.099 4.099 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.324 5.324 17 C 0.383 3.617 18 O -0.457 6.457 19 C -0.192 4.192 20 C -0.229 4.229 21 C -0.064 4.064 22 C -0.123 4.123 23 C -0.198 4.198 24 C -0.198 4.198 25 N -0.061 5.061 26 C -0.069 4.069 27 N -0.099 5.099 28 C -0.030 4.030 29 C -0.156 4.156 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.105 0.895 46 H 0.122 0.878 47 H 0.142 0.858 48 H 0.124 0.876 49 H 0.091 0.909 50 H 0.150 0.850 51 H 0.112 0.888 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.631 7.476 34.168 35.427 hybrid contribution -0.133 -1.034 -1.553 1.871 sum -5.764 6.442 32.615 33.741 Atomic orbital electron populations 1.22379 0.98442 1.00480 1.00285 1.20428 0.92381 0.94953 0.85753 0.93657 1.42724 1.78304 1.10490 1.06258 1.19627 1.34345 0.94092 0.88472 0.90803 1.25525 1.03421 0.96904 1.01366 1.69819 1.52954 1.10162 1.29266 0.85177 0.77816 0.77385 0.79624 1.21466 1.22532 1.19596 1.21267 0.99797 0.94350 0.94502 1.21805 1.00587 0.96329 0.96708 1.21604 1.00185 0.95480 0.83271 1.48029 1.55715 1.12193 1.16506 1.17373 0.77131 0.84957 0.82250 1.90732 1.52722 1.19686 1.82559 1.21619 1.05739 0.94644 0.97226 1.21467 1.06018 1.02276 0.93181 1.20790 0.98516 0.89841 0.97252 1.20522 1.00715 1.00432 0.90605 1.23168 1.01391 0.94168 1.01024 1.23163 0.90305 1.02840 1.03515 1.45895 1.33363 1.16767 1.10099 1.22683 1.04748 0.80260 0.99167 1.73300 1.22328 1.14080 1.00175 1.22562 1.01086 0.78477 1.00895 1.21947 1.01050 0.99987 0.92591 0.91246 0.94276 0.94970 0.79333 0.94236 0.91746 0.92267 0.92163 0.90456 0.90315 0.82913 0.83500 0.89466 0.85776 0.85833 0.89508 0.87799 0.85778 0.87561 0.90868 0.84984 0.88798 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 8.79 71.98 0.63 -5.13 16 2 C 0.17 6.84 2.72 44.99 0.12 6.96 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.74 -37.53 5.04 -322.93 -1.63 -39.16 16 5 C -0.23 -13.12 9.93 84.03 0.83 -12.29 16 6 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 7 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 8 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 9 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C -0.08 -2.62 2.14 -10.77 -0.02 -2.64 16 14 C -0.12 -4.00 4.81 30.67 0.15 -3.86 16 15 C 0.12 3.71 6.44 86.36 0.56 4.27 16 16 N -0.59 -17.80 2.97 -822.46 -2.44 -20.24 16 17 C 0.59 19.55 7.69 86.75 0.67 20.22 16 18 O -0.58 -22.64 16.36 -3.93 -0.06 -22.70 16 19 C -0.03 -0.95 6.83 42.46 0.29 -0.66 16 20 C -0.20 -4.67 9.86 22.41 0.22 -4.45 16 21 C 0.06 0.98 6.60 41.40 0.27 1.25 16 22 C -0.10 -0.85 5.94 -11.54 -0.07 -0.92 16 23 C -0.16 -1.22 10.05 30.60 0.31 -0.92 16 24 C -0.16 -1.26 10.05 30.60 0.31 -0.95 16 25 N -0.27 -4.19 3.70 -355.93 -1.32 -5.51 16 26 C 0.07 0.30 11.05 127.77 1.41 1.71 16 27 N -0.26 -5.77 8.46 -48.18 -0.41 -6.17 16 28 C 0.09 2.27 6.11 86.36 0.53 2.80 16 29 C -0.12 -3.02 4.97 30.67 0.15 -2.86 16 30 H 0.07 2.09 6.46 -2.39 -0.02 2.08 16 31 H 0.04 1.50 6.46 -2.39 -0.02 1.49 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.37 20.41 6.04 -92.71 -0.56 19.85 16 34 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.12 6.51 -2.39 -0.02 2.10 16 37 H 0.06 2.38 6.46 -2.39 -0.02 2.37 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 40 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.15 0.29 7.16 -2.39 -0.02 0.28 16 42 H 0.09 0.96 7.95 -2.39 -0.02 0.94 16 43 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.09 0.98 7.96 -2.39 -0.02 0.96 16 46 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.12 -0.19 7.12 -2.39 -0.02 -0.21 16 48 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.13 3.05 4.18 -25.25 -0.11 2.95 16 51 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.06 1.73 6.51 -2.38 -0.02 1.71 16 Total: -1.00 -77.35 405.30 3.55 -73.80 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.28 Total: 32.84 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.83 Total: -1.69 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.51 Total: -131.41 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -77.35 3.55 -73.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731994890.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.968 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds