Wall clock time and date at job start Wed Apr 1 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47075 * 2 1 4 4 N 1.46496 * 109.47333 * 240.00038 * 2 1 3 5 5 C 1.36934 * 120.00043 * 84.72428 * 4 2 1 6 6 H 1.08004 * 119.99905 * 0.27227 * 5 4 2 7 7 C 1.38813 * 120.00276 * 180.27794 * 5 4 2 8 8 N 1.31625 * 119.99386 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00393 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46772 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47030 * 119.99508 * 9 7 5 12 12 H 1.48496 * 109.46981 * 239.99855 * 9 7 5 13 13 C 1.53002 * 109.47098 * 119.99859 * 2 1 3 14 14 C 1.53039 * 109.45915 * 60.06924 * 13 2 1 15 15 C 1.53192 * 109.31068 * 178.61548 * 14 13 2 16 16 N 1.46926 * 108.77788 * 54.63874 * 15 14 13 17 17 C 1.34772 * 120.63472 * 126.41135 * 16 15 14 18 18 O 1.21511 * 119.99886 * 354.34394 * 17 16 15 19 19 C 1.48161 * 120.00223 * 174.33818 * 17 16 15 20 20 C 1.40016 * 120.88003 * 324.74580 * 19 17 16 21 21 C 1.37949 * 119.17440 * 179.72575 * 20 19 17 22 22 N 1.31920 * 121.00260 * 0.55629 * 21 20 19 23 23 C 1.32322 * 121.94350 * 359.71850 * 22 21 20 24 24 N 1.39025 * 119.64580 * 180.02562 * 23 22 21 25 25 C 1.46501 * 119.99832 * 184.97467 * 24 23 22 26 26 C 1.46499 * 119.99802 * 4.97366 * 24 23 22 27 27 C 1.39125 * 120.70767 * 359.97438 * 23 22 21 28 28 C 1.46932 * 118.73569 * 306.38725 * 16 15 14 29 29 C 1.53044 * 109.46008 * 300.00174 * 13 2 1 30 30 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47160 * 300.00079 * 1 2 3 32 32 H 1.09005 * 109.47226 * 60.00034 * 1 2 3 33 33 H 0.96999 * 119.99557 * 265.00082 * 4 2 1 34 34 H 0.97001 * 119.99613 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.45983 * 180.02562 * 13 2 1 36 36 H 1.09007 * 109.49776 * 298.56498 * 14 13 2 37 37 H 1.08994 * 109.49905 * 58.66043 * 14 13 2 38 38 H 1.08999 * 109.58908 * 294.84771 * 15 14 13 39 39 H 1.09006 * 109.70275 * 174.49173 * 15 14 13 40 40 H 1.08002 * 120.41695 * 359.96969 * 20 19 17 41 41 H 1.08001 * 119.50434 * 180.29414 * 21 20 19 42 42 H 1.09007 * 109.46939 * 89.99927 * 25 24 23 43 43 H 1.08998 * 109.47021 * 209.99698 * 25 24 23 44 44 H 1.08998 * 109.47365 * 330.00014 * 25 24 23 45 45 H 1.08998 * 109.46901 * 60.00724 * 26 24 23 46 46 H 1.09006 * 109.46839 * 180.02562 * 26 24 23 47 47 H 1.08995 * 109.47466 * 299.99881 * 26 24 23 48 48 H 1.07998 * 120.53057 * 179.97438 * 27 23 22 49 49 H 1.09002 * 109.58725 * 293.82501 * 28 16 15 50 50 H 1.08998 * 109.58443 * 173.39967 * 28 16 15 51 51 H 1.09002 * 109.49688 * 301.33619 * 29 13 2 52 52 H 1.09003 * 109.49662 * 61.40135 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1438 -0.0088 -2.3771 6 1 1.8869 1.0391 -2.4256 7 6 2.6011 -0.6646 -3.5119 8 7 2.9145 -1.9416 -3.4526 9 14 2.7715 0.2652 -5.1230 10 1 2.3573 1.6775 -4.9256 11 1 4.1863 0.2220 -5.5722 12 1 1.9059 -0.3649 -6.1521 13 6 2.0400 -0.7212 1.2493 14 6 1.5311 -2.1645 1.2482 15 6 2.0720 -2.8933 2.4823 16 7 1.7084 -2.1263 3.6816 17 6 1.0558 -2.7164 4.7025 18 8 0.6716 -3.8642 4.5955 19 6 0.8068 -1.9657 5.9553 20 6 1.7435 -1.0443 6.4392 21 6 1.4731 -0.3604 7.6063 22 7 0.3547 -0.5708 8.2736 23 6 -0.5566 -1.4354 7.8577 24 7 -1.7188 -1.6191 8.5982 25 6 -2.6820 -2.6508 8.2058 26 6 -1.9801 -0.7810 9.7710 27 6 -0.3647 -2.1618 6.6868 28 6 2.0705 -0.7038 3.7470 29 6 1.5297 0.0004 2.4987 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 -1.1525 34 1 3.2344 -2.3997 -4.2455 35 1 3.1300 -0.7207 1.2493 36 1 0.4413 -2.1661 1.2732 37 1 1.8755 -2.6710 0.3466 38 1 3.1569 -2.9721 2.4139 39 1 1.6361 -3.8908 2.5405 40 1 2.6645 -0.8682 5.9033 41 1 2.1897 0.3550 7.9818 42 1 -2.4337 -3.5881 8.7040 43 1 -3.6856 -2.3400 8.4958 44 1 -2.6432 -2.7921 7.1257 45 1 -2.0239 0.2650 9.4676 46 1 -2.9309 -1.0697 10.2193 47 1 -1.1801 -0.9150 10.4990 48 1 -1.1101 -2.8670 6.3502 49 1 3.1554 -0.6041 3.7817 50 1 1.6316 -0.2557 4.6384 51 1 1.8730 1.0349 2.4871 52 1 0.4399 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731998424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:59 Heat of formation + Delta-G solvation = 36.653834 kcal Electronic energy + Delta-G solvation = -30818.192229 eV Core-core repulsion = 26818.653540 eV Total energy + Delta-G solvation = -3999.538688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.08831 -39.78791 -38.01744 -36.84378 -35.48256 -33.28022 -32.69496 -31.20485 -30.76827 -30.35768 -28.64630 -28.18692 -26.05155 -25.43624 -24.29715 -23.88257 -22.74607 -22.39049 -21.31395 -19.88420 -18.64988 -17.80725 -17.18368 -17.13363 -16.38965 -15.95752 -15.84882 -15.68013 -15.22350 -14.85332 -14.67838 -14.46615 -14.33708 -13.85193 -13.77528 -13.68169 -13.58819 -13.09861 -13.00110 -12.95964 -12.71219 -12.64981 -12.45880 -12.18985 -12.04732 -11.82944 -11.52060 -11.31702 -11.06866 -10.85677 -10.59456 -10.48975 -10.38913 -10.27098 -10.12338 -10.05533 -9.99087 -9.67292 -9.63929 -9.46685 -8.90721 -8.64395 -7.88909 -6.94119 -5.76076 -3.03914 0.66042 1.00780 2.48374 2.70357 2.89812 3.43039 3.48802 3.50918 3.63067 4.11827 4.24969 4.57532 4.58789 4.73073 4.75207 4.85886 4.90042 4.94147 5.00809 5.04588 5.08748 5.23640 5.27798 5.29126 5.36491 5.43562 5.44959 5.49694 5.54423 5.57442 5.62034 5.79754 5.84596 5.89212 5.96250 5.97727 6.11120 6.14899 6.21211 6.29669 6.30569 6.48534 6.51768 6.56823 6.69130 6.78897 6.93000 6.97164 7.16471 7.30057 7.71556 7.80441 8.00457 8.43393 9.54383 10.13206 10.47471 11.46851 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.002075 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.181132 B =13491.750078 C =13614.785342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.596 5.596 17 C 0.557 3.443 18 O -0.535 6.535 19 C -0.036 4.036 20 C -0.211 4.211 21 C 0.146 3.854 22 N -0.531 5.531 23 C 0.399 3.601 24 N -0.618 5.618 25 C 0.092 3.908 26 C 0.107 3.893 27 C -0.186 4.186 28 C 0.091 3.909 29 C -0.130 4.130 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.162 0.838 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.141 0.859 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.075 0.925 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 2.313 27.316 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.110 4.110 14 C -0.165 4.165 15 C -0.011 4.011 16 N -0.328 5.328 17 C 0.345 3.655 18 O -0.412 6.412 19 C -0.047 4.047 20 C -0.234 4.234 21 C -0.011 4.011 22 N -0.249 5.249 23 C 0.165 3.835 24 N -0.333 5.333 25 C -0.051 4.051 26 C -0.036 4.036 27 C -0.211 4.211 28 C -0.031 4.031 29 C -0.168 4.168 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.179 0.821 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.159 0.841 49 H 0.091 0.909 50 H 0.114 0.886 51 H 0.094 0.906 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.252 2.246 27.954 28.967 hybrid contribution 0.331 -0.237 -1.816 1.861 sum -6.921 2.010 26.139 27.114 Atomic orbital electron populations 1.22540 0.99659 1.00860 0.99657 1.20183 0.91692 0.95128 0.86151 0.93653 1.42503 1.78113 1.10818 1.05241 1.19285 1.36190 0.93847 0.87282 0.91250 1.24727 1.02433 0.95988 0.97998 1.69665 1.51289 1.08611 1.28663 0.86144 0.77251 0.78768 0.84204 1.20634 1.21947 1.21977 1.21399 1.00361 0.94646 0.94551 1.21971 1.01303 0.96054 0.97162 1.21776 1.00014 0.96044 0.83249 1.48023 1.56252 1.11141 1.17365 1.18273 0.77935 0.86286 0.83044 1.90773 1.50974 1.17805 1.81686 1.20038 0.94690 0.95318 0.94703 1.22202 1.01739 0.99677 0.99784 1.22379 0.92354 0.96131 0.90238 1.67040 1.03394 1.20002 1.34434 1.18171 0.86883 0.90452 0.88014 1.46201 1.18841 1.38401 1.29829 1.21797 0.91578 0.90275 1.01459 1.21501 1.00757 0.94479 0.86851 1.21480 0.99546 1.04292 0.95799 1.22346 1.00436 0.80136 1.00198 1.22035 1.01547 0.99361 0.93873 0.93327 0.94504 0.93163 0.78168 0.93624 0.90989 0.91414 0.89530 0.91157 0.89105 0.83832 0.82121 0.92732 0.90801 0.90844 0.92535 0.91247 0.92374 0.84110 0.90940 0.88593 0.90596 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.79 37.16 0.33 -2.65 16 2 C 0.18 3.36 2.72 -67.93 -0.18 3.18 16 3 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 4 N -0.72 -17.52 5.04 -53.43 -0.27 -17.79 16 5 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 8 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 9 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C -0.09 -1.36 2.14 -90.58 -0.19 -1.56 16 14 C -0.13 -1.94 4.81 -26.61 -0.13 -2.07 16 15 C 0.11 1.52 6.44 -3.71 -0.02 1.49 16 16 N -0.60 -7.52 2.97 -173.76 -0.52 -8.04 16 17 C 0.56 7.75 7.43 -12.19 -0.09 7.66 16 18 O -0.53 -9.17 16.31 5.36 0.09 -9.08 16 19 C -0.04 -0.43 5.31 -104.69 -0.56 -0.98 16 20 C -0.21 -1.94 7.47 -39.02 -0.29 -2.23 16 21 C 0.15 1.27 11.16 -17.62 -0.20 1.07 16 22 N -0.53 -5.62 9.54 -12.48 -0.12 -5.74 16 23 C 0.40 4.28 7.37 -155.07 -1.14 3.14 16 24 N -0.62 -5.31 3.39 -189.68 -0.64 -5.95 16 25 C 0.09 0.56 10.25 59.85 0.61 1.18 16 26 C 0.11 0.71 10.18 59.85 0.61 1.32 16 27 C -0.19 -2.11 8.88 -38.78 -0.34 -2.45 16 28 C 0.09 0.93 4.82 -3.71 -0.02 0.91 16 29 C -0.13 -1.54 4.97 -26.61 -0.13 -1.67 16 30 H 0.05 0.88 6.46 -51.93 -0.34 0.55 16 31 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.38 9.77 6.04 -40.82 -0.25 9.53 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 37 H 0.09 1.52 6.46 -51.93 -0.34 1.18 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 40 H 0.14 1.07 6.13 -52.49 -0.32 0.74 16 41 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 44 H 0.07 0.47 5.97 -51.93 -0.31 0.16 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.29 7.80 -51.93 -0.40 -0.11 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.14 1.55 6.02 -52.49 -0.32 1.23 16 49 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 50 H 0.10 0.86 4.44 -51.93 -0.23 0.63 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -33.59 400.42 -9.78 -43.37 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.05 Total: 7.84 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.00 Total: -0.76 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.82 Total: -64.70 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.59 -9.78 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.024 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds