Wall clock time and date at job start Wed Apr 1 2020 04:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 C 1.53044 * 109.46224 * 180.02562 * 13 2 1 15 15 C 1.53181 * 109.31354 * 178.61429 * 14 13 2 16 16 N 1.46933 * 108.77765 * 54.64091 * 15 14 13 17 17 C 1.34772 * 120.63078 * 126.41058 * 16 15 14 18 18 O 1.21286 * 119.99777 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00458 * 359.97438 * 17 16 15 20 20 N 1.46496 * 109.47542 * 180.02562 * 19 17 16 21 21 C 1.34946 * 126.04058 * 124.71327 * 20 19 17 22 22 C 1.35322 * 107.74825 * 179.84091 * 21 20 19 23 23 C 1.50694 * 126.04389 * 180.16137 * 22 21 20 24 24 C 1.52994 * 117.50005 * 188.90555 * 23 22 21 25 25 C 1.53002 * 60.00209 * 252.50869 * 24 23 22 26 26 C 1.39874 * 107.91782 * 0.42331 * 22 21 20 27 27 N 1.30845 * 108.20075 * 359.73920 * 26 22 21 28 28 C 1.46929 * 118.73231 * 306.38921 * 16 15 14 29 29 C 1.53045 * 109.45784 * 60.00103 * 13 2 1 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 34 34 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.46236 * 300.02846 * 13 2 1 36 36 H 1.09004 * 109.49555 * 298.57239 * 14 13 2 37 37 H 1.09005 * 109.49304 * 58.66537 * 14 13 2 38 38 H 1.08994 * 109.59258 * 294.85011 * 15 14 13 39 39 H 1.09008 * 109.58448 * 174.42230 * 15 14 13 40 40 H 1.09009 * 109.47118 * 300.00197 * 19 17 16 41 41 H 1.09004 * 109.47182 * 59.99818 * 19 17 16 42 42 H 1.07997 * 126.12566 * 0.02562 * 21 20 19 43 43 H 1.08997 * 115.54634 * 334.61903 * 23 22 21 44 44 H 1.08996 * 117.50285 * 0.02562 * 24 23 22 45 45 H 1.09004 * 117.49714 * 145.02407 * 24 23 22 46 46 H 1.08990 * 117.50040 * 252.50774 * 25 24 23 47 47 H 1.09007 * 117.51114 * 107.47883 * 25 24 23 48 48 H 1.07996 * 125.89782 * 179.75700 * 26 22 21 49 49 H 1.08994 * 109.58763 * 293.81686 * 28 16 15 50 50 H 1.09003 * 109.69961 * 173.46323 * 28 16 15 51 51 H 1.09003 * 109.49703 * 301.33236 * 29 13 2 52 52 H 1.08993 * 109.49826 * 61.43483 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 2.3910 1.6863 4.9169 11 1 1.9519 -0.3534 6.1523 12 1 4.2266 0.2330 5.5497 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2487 15 6 4.0772 -1.4746 -2.4827 16 7 3.4745 -0.8769 -3.6820 17 6 4.2479 -0.4581 -4.7032 18 8 3.7382 0.0332 -5.6880 19 6 5.7459 -0.6003 -4.6216 20 7 6.3538 -0.0750 -5.8466 21 6 7.3039 0.8809 -5.9146 22 6 7.5981 1.0778 -7.2207 23 6 8.6092 2.0540 -7.7645 24 6 8.6402 2.2688 -9.2790 25 6 9.7632 1.4872 -8.5940 26 6 6.7935 0.2195 -7.9772 27 7 6.0472 -0.4720 -7.1545 28 6 2.0126 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.2629 -2.3923 4.2382 35 1 1.6762 -1.7487 -1.2493 36 1 3.9345 0.3054 -1.2740 37 1 3.9337 -1.2149 -0.3470 38 1 3.7906 -2.5239 -2.4139 39 1 5.1628 -1.3932 -2.5401 40 1 6.1177 -0.0408 -3.7631 41 1 6.0054 -1.6530 -4.5093 42 1 7.7516 1.3945 -5.0767 43 1 8.8209 2.9141 -7.1294 44 1 7.9291 1.7044 -9.8821 45 1 8.8724 3.2705 -9.6406 46 1 10.7339 1.9747 -8.5050 47 1 9.7911 0.4082 -8.7462 48 1 6.7892 0.1409 -9.0543 49 1 1.5575 -1.7347 -3.7812 50 1 1.7336 -0.1833 -4.6385 51 1 0.4399 0.0214 -2.4870 52 1 1.9136 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731999276.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:01 Heat of formation + Delta-G solvation = 80.830191 kcal Electronic energy + Delta-G solvation = -30153.896781 eV Core-core repulsion = 26156.273723 eV Total energy + Delta-G solvation = -3997.623058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.52470 -40.18925 -38.02619 -37.22446 -35.48318 -33.55068 -32.86259 -31.20413 -30.82203 -30.27562 -28.54625 -27.53190 -25.33319 -23.84434 -23.14115 -22.92159 -22.61352 -21.76142 -20.90794 -20.12293 -19.69117 -18.89882 -17.67452 -17.18288 -17.00866 -16.03538 -15.81575 -15.56772 -15.06713 -14.71776 -14.45965 -14.38184 -14.02130 -13.91533 -13.86257 -13.71529 -13.38665 -13.00397 -12.88631 -12.62451 -12.53430 -12.38877 -12.17832 -12.10137 -11.78267 -11.65477 -11.23700 -11.12095 -11.05097 -10.92057 -10.77885 -10.73178 -10.51885 -10.36704 -10.30826 -10.21594 -10.07999 -9.84223 -9.63361 -9.44562 -8.96087 -8.68311 -8.39257 -6.99608 -5.81874 -3.09706 1.67303 2.16642 2.41490 2.56884 2.89183 3.38630 3.45306 3.46786 3.76350 4.07694 4.28872 4.51702 4.53793 4.63101 4.67851 4.72312 4.77707 4.82023 4.96576 4.99322 5.01094 5.13537 5.14584 5.30655 5.38212 5.39939 5.46570 5.49435 5.60751 5.62051 5.72826 5.82020 5.85358 5.86656 5.87690 5.94656 6.01007 6.05974 6.14918 6.25634 6.34133 6.41386 6.46030 6.48550 6.60311 6.71507 6.75289 6.89374 7.08262 7.24499 7.56281 7.66715 7.99382 8.37240 9.48642 10.06445 10.41278 11.40787 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.001981 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.232257 B =14132.613972 C =15178.016345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.123 4.123 15 C 0.102 3.898 16 N -0.606 5.606 17 C 0.502 3.498 18 O -0.518 6.518 19 C 0.116 3.884 20 N -0.360 5.360 21 C 0.060 3.940 22 C -0.206 4.206 23 C -0.072 4.072 24 C -0.177 4.177 25 C -0.177 4.177 26 C 0.045 3.955 27 N -0.263 5.263 28 C 0.115 3.885 29 C -0.128 4.128 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.174 0.826 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.178 0.822 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 3.758 -21.413 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.020 4.020 16 N -0.341 5.341 17 C 0.287 3.713 18 O -0.393 6.393 19 C -0.009 4.009 20 N -0.142 5.142 21 C -0.085 4.085 22 C -0.218 4.218 23 C -0.091 4.091 24 C -0.214 4.214 25 C -0.214 4.214 26 C -0.142 4.142 27 N -0.083 5.083 28 C -0.007 4.007 29 C -0.166 4.166 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.191 0.809 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.195 0.805 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.545 3.186 -21.545 23.395 hybrid contribution 0.720 0.741 1.178 1.567 sum 9.265 3.927 -20.367 22.717 Atomic orbital electron populations 1.22494 0.99489 1.00783 0.99883 1.20214 0.91653 0.95299 0.86041 0.93739 1.42418 1.78077 1.10540 1.05374 1.19270 1.35920 0.93827 0.87520 0.91289 1.24710 1.02367 0.95977 0.97984 1.69660 1.51109 1.08642 1.28799 0.86164 0.77282 0.78828 0.84206 1.20646 1.21956 1.21935 1.21383 0.94833 1.00021 0.94692 1.21904 0.96266 1.00908 0.97056 1.21963 0.97503 0.97923 0.84604 1.48154 1.07411 1.61082 1.17433 1.20419 0.88711 0.78916 0.83219 1.90766 1.74405 1.43380 1.30778 1.21571 0.92240 1.02657 0.84432 1.47962 1.30258 1.30703 1.05283 1.22205 0.93675 0.93718 0.98868 1.19230 1.05369 1.05217 0.91946 1.20156 0.97022 0.98606 0.93350 1.22954 1.02053 1.01656 0.94709 1.23015 0.93581 1.00267 1.04549 1.23717 0.94894 0.95799 0.99806 1.77498 1.21307 1.23031 0.86481 1.21639 0.78565 1.00918 0.99606 1.22022 1.01280 0.99576 0.93748 0.93016 0.94292 0.93568 0.78351 0.93631 0.91290 0.91895 0.88716 0.90737 0.90410 0.85614 0.86768 0.80922 0.87391 0.88725 0.88724 0.88840 0.88825 0.80494 0.91456 0.89365 0.90295 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.18 3.22 2.47 -67.93 -0.17 3.05 16 3 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 4 N -0.72 -16.61 4.41 -53.43 -0.24 -16.85 16 5 C -0.23 -6.16 9.93 -15.06 -0.15 -6.31 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 9 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C -0.09 -1.28 1.79 -90.57 -0.16 -1.45 16 14 C -0.12 -1.65 5.22 -26.61 -0.14 -1.79 16 15 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 16 N -0.61 -7.08 2.97 -172.77 -0.51 -7.59 16 17 C 0.50 6.49 7.73 -10.99 -0.08 6.40 16 18 O -0.52 -8.87 15.12 5.55 0.08 -8.78 16 19 C 0.12 1.12 5.34 -5.20 -0.03 1.09 16 20 N -0.36 -4.25 3.40 -62.55 -0.21 -4.46 16 21 C 0.06 0.60 11.36 -17.22 -0.20 0.40 16 22 C -0.21 -2.09 5.76 -105.05 -0.61 -2.69 16 23 C -0.07 -0.56 6.25 -91.78 -0.57 -1.14 16 24 C -0.18 -1.20 10.02 -26.73 -0.27 -1.46 16 25 C -0.18 -1.19 10.23 -26.73 -0.27 -1.46 16 26 C 0.05 0.52 11.35 -17.36 -0.20 0.32 16 27 N -0.26 -3.68 11.64 30.63 0.36 -3.33 16 28 C 0.11 1.37 6.43 -3.71 -0.02 1.35 16 29 C -0.13 -1.58 5.04 -26.61 -0.13 -1.71 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.38 9.34 7.58 -40.82 -0.31 9.03 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.51 7.41 -51.93 -0.38 1.12 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.60 5.93 -51.92 -0.31 0.29 16 40 H 0.13 0.82 7.62 -51.92 -0.40 0.43 16 41 H 0.11 0.88 7.94 -51.93 -0.41 0.47 16 42 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.63 6.97 -51.93 -0.36 0.26 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.18 1.57 7.19 -52.49 -0.38 1.19 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 51 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 52 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -33.71 413.65 -9.98 -43.69 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.62 Total: 7.92 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.78 Total: -7.35 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.12 Total: -58.42 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.71 -9.98 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731999276.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.525 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds