Wall clock time and date at job start Wed Apr 1 2020 04:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 C 1.53044 * 109.46224 * 180.02562 * 13 2 1 15 15 C 1.53181 * 109.31354 * 178.61429 * 14 13 2 16 16 N 1.46933 * 108.77765 * 54.64091 * 15 14 13 17 17 C 1.34772 * 120.63078 * 126.41058 * 16 15 14 18 18 O 1.21286 * 119.99777 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00458 * 359.97438 * 17 16 15 20 20 N 1.46496 * 109.47542 * 180.02562 * 19 17 16 21 21 C 1.34946 * 126.04058 * 124.71327 * 20 19 17 22 22 C 1.35322 * 107.74825 * 179.84091 * 21 20 19 23 23 C 1.50694 * 126.04389 * 180.16137 * 22 21 20 24 24 C 1.52994 * 117.50005 * 188.90555 * 23 22 21 25 25 C 1.53002 * 60.00209 * 252.50869 * 24 23 22 26 26 C 1.39874 * 107.91782 * 0.42331 * 22 21 20 27 27 N 1.30845 * 108.20075 * 359.73920 * 26 22 21 28 28 C 1.46929 * 118.73231 * 306.38921 * 16 15 14 29 29 C 1.53045 * 109.45784 * 60.00103 * 13 2 1 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 34 34 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.46236 * 300.02846 * 13 2 1 36 36 H 1.09004 * 109.49555 * 298.57239 * 14 13 2 37 37 H 1.09005 * 109.49304 * 58.66537 * 14 13 2 38 38 H 1.08994 * 109.59258 * 294.85011 * 15 14 13 39 39 H 1.09008 * 109.58448 * 174.42230 * 15 14 13 40 40 H 1.09009 * 109.47118 * 300.00197 * 19 17 16 41 41 H 1.09004 * 109.47182 * 59.99818 * 19 17 16 42 42 H 1.07997 * 126.12566 * 0.02562 * 21 20 19 43 43 H 1.08997 * 115.54634 * 334.61903 * 23 22 21 44 44 H 1.08996 * 117.50285 * 0.02562 * 24 23 22 45 45 H 1.09004 * 117.49714 * 145.02407 * 24 23 22 46 46 H 1.08990 * 117.50040 * 252.50774 * 25 24 23 47 47 H 1.09007 * 117.51114 * 107.47883 * 25 24 23 48 48 H 1.07996 * 125.89782 * 179.75700 * 26 22 21 49 49 H 1.08994 * 109.58763 * 293.81686 * 28 16 15 50 50 H 1.09003 * 109.69961 * 173.46323 * 28 16 15 51 51 H 1.09003 * 109.49703 * 301.33236 * 29 13 2 52 52 H 1.08993 * 109.49826 * 61.43483 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 2.3910 1.6863 4.9169 11 1 1.9519 -0.3534 6.1523 12 1 4.2266 0.2330 5.5497 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2487 15 6 4.0772 -1.4746 -2.4827 16 7 3.4745 -0.8769 -3.6820 17 6 4.2479 -0.4581 -4.7032 18 8 3.7382 0.0332 -5.6880 19 6 5.7459 -0.6003 -4.6216 20 7 6.3538 -0.0750 -5.8466 21 6 7.3039 0.8809 -5.9146 22 6 7.5981 1.0778 -7.2207 23 6 8.6092 2.0540 -7.7645 24 6 8.6402 2.2688 -9.2790 25 6 9.7632 1.4872 -8.5940 26 6 6.7935 0.2195 -7.9772 27 7 6.0472 -0.4720 -7.1545 28 6 2.0126 -0.7449 -3.7469 29 6 1.5297 0.0004 -2.4986 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1526 34 1 3.2629 -2.3923 4.2382 35 1 1.6762 -1.7487 -1.2493 36 1 3.9345 0.3054 -1.2740 37 1 3.9337 -1.2149 -0.3470 38 1 3.7906 -2.5239 -2.4139 39 1 5.1628 -1.3932 -2.5401 40 1 6.1177 -0.0408 -3.7631 41 1 6.0054 -1.6530 -4.5093 42 1 7.7516 1.3945 -5.0767 43 1 8.8209 2.9141 -7.1294 44 1 7.9291 1.7044 -9.8821 45 1 8.8724 3.2705 -9.6406 46 1 10.7339 1.9747 -8.5050 47 1 9.7911 0.4082 -8.7462 48 1 6.7892 0.1409 -9.0543 49 1 1.5575 -1.7347 -3.7812 50 1 1.7336 -0.1833 -4.6385 51 1 0.4399 0.0214 -2.4870 52 1 1.9136 1.0204 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731999276.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:59 Heat of formation + Delta-G solvation = 61.400535 kcal Electronic energy + Delta-G solvation = -30154.739314 eV Core-core repulsion = 26156.273723 eV Total energy + Delta-G solvation = -3998.465591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.30771 -41.17381 -39.20080 -37.82163 -36.88112 -34.74659 -34.14726 -32.48062 -32.06478 -31.05656 -30.08520 -28.45141 -26.59731 -25.47473 -24.02380 -23.78723 -23.18578 -22.76953 -21.89324 -21.13751 -20.80328 -19.85513 -19.11139 -18.41130 -17.90966 -16.87666 -16.76305 -16.68239 -16.26773 -15.78975 -15.51790 -15.47208 -15.31450 -14.97919 -14.95078 -14.77484 -14.44677 -14.21504 -13.97917 -13.73338 -13.56541 -13.43383 -13.32522 -13.00219 -12.88984 -12.81563 -12.77182 -12.30560 -12.27175 -12.15820 -12.08570 -11.82625 -11.75894 -11.51244 -11.39833 -11.36410 -11.19806 -11.11683 -11.05257 -10.86366 -10.31151 -9.69567 -9.11625 -8.93327 -7.90271 -5.15959 0.90304 1.44181 1.47017 1.47593 1.49377 1.57634 1.80883 2.00143 2.58498 3.20699 3.26492 3.43674 3.59582 3.77017 3.80715 3.88716 3.94961 4.01560 4.08738 4.13439 4.14775 4.24071 4.27520 4.29881 4.40028 4.44876 4.54256 4.56230 4.59721 4.74637 4.78663 4.80148 4.87736 4.89414 4.93781 5.05710 5.07689 5.08560 5.14818 5.17283 5.25296 5.36066 5.37164 5.41899 5.48394 5.53815 5.62261 5.68219 5.70467 6.04451 6.31911 6.33208 6.76248 7.04488 7.39887 8.17633 8.41089 9.32911 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.001981 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.232257 B =14132.613972 C =15178.016345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 H 0.035 0.965 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.965 5.965 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.298 1.298 12 H -0.294 1.294 13 C -0.081 4.081 14 C -0.118 4.118 15 C 0.109 3.891 16 N -0.603 5.603 17 C 0.499 3.501 18 O -0.567 6.567 19 C 0.114 3.886 20 N -0.369 5.369 21 C 0.058 3.942 22 C -0.215 4.215 23 C -0.082 4.082 24 C -0.177 4.177 25 C -0.170 4.170 26 C 0.036 3.964 27 N -0.314 5.314 28 C 0.116 3.884 29 C -0.115 4.115 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.136 0.864 42 H 0.207 0.793 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.190 0.810 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.089 0.911 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 4.621 -21.920 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 H 0.053 0.947 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.221 1.221 13 C -0.100 4.100 14 C -0.156 4.156 15 C -0.013 4.013 16 N -0.336 5.336 17 C 0.286 3.714 18 O -0.445 6.445 19 C -0.011 4.011 20 N -0.151 5.151 21 C -0.087 4.087 22 C -0.227 4.227 23 C -0.101 4.101 24 C -0.214 4.214 25 C -0.207 4.207 26 C -0.150 4.150 27 N -0.134 5.134 28 C -0.006 4.006 29 C -0.154 4.154 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.179 0.821 41 H 0.153 0.847 42 H 0.224 0.776 43 H 0.137 0.863 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.207 0.793 49 H 0.097 0.903 50 H 0.095 0.905 51 H 0.107 0.893 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.635 4.071 -22.068 24.421 hybrid contribution 0.329 0.522 1.278 1.419 sum 9.964 4.593 -20.790 23.507 Atomic orbital electron populations 1.22375 0.98331 1.00771 1.00394 1.20427 0.92332 0.94784 0.85993 0.94706 1.42550 1.78203 1.10194 1.06032 1.19562 1.33996 0.93886 0.88647 0.91334 1.25383 1.03486 0.96834 1.00883 1.69790 1.52855 1.09908 1.29131 0.85234 0.76737 0.78145 0.80637 1.19551 1.22611 1.22107 1.21258 0.95625 0.99593 0.93553 1.21778 0.95468 1.00793 0.97548 1.22005 0.99331 0.97594 0.82362 1.48211 1.07280 1.60563 1.17570 1.21012 0.90145 0.77754 0.82459 1.90747 1.75538 1.45592 1.32611 1.21847 0.89673 1.04626 0.84908 1.48133 1.30735 1.31215 1.05065 1.22821 0.92930 0.92977 0.99941 1.19551 1.05619 1.05357 0.92131 1.20241 0.97150 0.98713 0.94042 1.23038 1.02017 1.02312 0.94076 1.23035 0.93966 1.00016 1.03718 1.24071 0.94681 0.95766 1.00525 1.77413 1.23089 1.24956 0.87955 1.21589 0.79149 1.01271 0.98629 1.21901 1.01822 0.98891 0.92765 0.95202 0.91066 0.93808 0.79348 0.94241 0.91330 0.92360 0.91303 0.89794 0.87093 0.82137 0.84669 0.77630 0.86272 0.89021 0.87550 0.87445 0.89495 0.79293 0.90297 0.90530 0.89269 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.14 71.98 0.66 -4.58 16 2 C 0.17 6.14 2.47 44.99 0.11 6.25 16 3 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 4 N -0.73 -33.60 4.41 -322.94 -1.42 -35.02 16 5 C -0.23 -12.03 9.93 84.03 0.83 -11.20 16 6 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.97 -56.30 13.06 21.65 0.28 -56.02 16 9 Si 0.96 44.84 29.55 68.60 2.03 46.87 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 C -0.08 -2.21 1.79 -10.76 -0.02 -2.23 16 14 C -0.12 -2.98 5.22 30.67 0.16 -2.82 16 15 C 0.11 1.96 6.34 86.36 0.55 2.51 16 16 N -0.60 -12.92 2.97 -818.91 -2.43 -15.36 16 17 C 0.50 12.16 7.73 87.66 0.68 12.84 16 18 O -0.57 -19.30 15.12 -3.05 -0.05 -19.34 16 19 C 0.11 1.90 5.34 85.63 0.46 2.36 16 20 N -0.37 -8.18 3.40 -351.80 -1.20 -9.38 16 21 C 0.06 1.04 11.36 83.54 0.95 1.99 16 22 C -0.22 -4.10 5.76 -20.14 -0.12 -4.22 16 23 C -0.08 -1.15 6.25 -11.54 -0.07 -1.23 16 24 C -0.18 -2.15 10.02 30.59 0.31 -1.84 16 25 C -0.17 -2.00 10.23 30.60 0.31 -1.68 16 26 C 0.04 0.82 11.35 85.24 0.97 1.79 16 27 N -0.31 -8.74 11.64 -57.02 -0.66 -9.40 16 28 C 0.12 2.60 6.43 86.36 0.56 3.15 16 29 C -0.12 -2.65 5.04 30.67 0.15 -2.49 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.87 6.40 -2.39 -0.02 1.85 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.37 18.44 7.58 -92.71 -0.70 17.73 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 2.16 7.41 -2.38 -0.02 2.14 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.29 5.93 -2.38 -0.01 1.28 16 40 H 0.16 1.48 7.62 -2.38 -0.02 1.46 16 41 H 0.14 1.67 7.94 -2.39 -0.02 1.66 16 42 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.15 6.97 -2.39 -0.02 1.13 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.19 3.41 7.19 -2.91 -0.02 3.39 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.08 1.95 7.01 -2.39 -0.02 1.94 16 51 H 0.09 1.87 6.36 -2.39 -0.02 1.85 16 52 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.62 413.65 3.71 -70.91 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.21 Total: 31.73 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 6.95 Total: -4.99 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -5.43 Total: -125.17 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.62 3.71 -70.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731999276.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.306 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds