Wall clock time and date at job start Wed Apr 1 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47409 * 59.99747 * 9 7 5 11 11 H 1.48508 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47283 * 299.99411 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 C 1.53037 * 109.45879 * 60.02382 * 13 2 1 15 15 C 1.53198 * 109.30765 * 178.60225 * 14 13 2 16 16 N 1.46928 * 108.76726 * 54.65578 * 15 14 13 17 17 C 1.34775 * 120.62763 * 126.35880 * 16 15 14 18 18 O 1.21278 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50705 * 120.00288 * 0.02562 * 17 16 15 20 20 N 1.46496 * 109.47136 * 180.02562 * 19 17 16 21 21 C 1.34945 * 126.04107 * 124.71281 * 20 19 17 22 22 C 1.35317 * 107.74842 * 179.83691 * 21 20 19 23 23 C 1.50696 * 126.04034 * 180.16330 * 22 21 20 24 24 C 1.53002 * 117.49938 * 188.90760 * 23 22 21 25 25 C 1.52999 * 59.99989 * 252.50939 * 24 23 22 26 26 C 1.39878 * 107.91963 * 0.42775 * 22 21 20 27 27 N 1.30842 * 108.20094 * 359.73223 * 26 22 21 28 28 C 1.46923 * 118.73590 * 306.38412 * 16 15 14 29 29 C 1.53042 * 109.45645 * 299.97136 * 13 2 1 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 34 34 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.45905 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.50080 * 298.56499 * 14 13 2 37 37 H 1.09004 * 109.50002 * 58.66766 * 14 13 2 38 38 H 1.08995 * 109.59774 * 294.86543 * 15 14 13 39 39 H 1.09004 * 109.69743 * 174.51028 * 15 14 13 40 40 H 1.09000 * 109.46918 * 299.99811 * 19 17 16 41 41 H 1.09002 * 109.47084 * 59.99920 * 19 17 16 42 42 H 1.07997 * 126.12410 * 0.02562 * 21 20 19 43 43 H 1.08995 * 115.55435 * 334.61622 * 23 22 21 44 44 H 1.09006 * 117.49541 * 359.97438 * 24 23 22 45 45 H 1.09001 * 117.50200 * 145.02008 * 24 23 22 46 46 H 1.08994 * 117.49689 * 252.50701 * 25 24 23 47 47 H 1.09007 * 117.51340 * 107.48150 * 25 24 23 48 48 H 1.07991 * 125.89915 * 179.75928 * 26 22 21 49 49 H 1.08995 * 109.58843 * 293.81721 * 28 16 15 50 50 H 1.09005 * 109.69834 * 173.45969 * 28 16 15 51 51 H 1.09000 * 109.49675 * 301.33395 * 29 13 2 52 52 H 1.08993 * 109.49759 * 61.40475 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 3.7465 1.3917 -4.9367 11 1 3.2993 -0.6486 -6.1683 12 1 1.4685 0.8077 -5.5286 13 6 2.0400 -0.7213 1.2493 14 6 1.5302 -2.1643 1.2486 15 6 2.0714 -2.8932 2.4826 16 7 1.7086 -2.1258 3.6819 17 6 1.0551 -2.7153 4.7027 18 8 0.7609 -2.0709 5.6870 19 6 0.6902 -4.1752 4.6209 20 7 -0.0087 -4.5732 5.8454 21 6 -1.2267 -5.1504 5.9125 22 6 -1.5114 -5.3620 7.2183 23 6 -2.7692 -5.9901 7.7610 24 6 -2.9834 -5.9475 9.2754 25 6 -2.6200 -7.2667 8.5909 26 6 -0.4347 -4.8891 7.9757 27 7 0.4667 -4.4161 7.1538 28 6 2.0712 -0.7035 3.7469 29 6 1.5303 0.0008 2.4986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2477 -2.3965 -4.2421 35 1 3.1300 -0.7208 1.2493 36 1 0.4405 -2.1652 1.2741 37 1 1.8740 -2.6713 0.3470 38 1 3.1563 -2.9725 2.4139 39 1 1.6351 -3.8905 2.5410 40 1 0.0396 -4.3395 3.7619 41 1 1.5964 -4.7706 4.5095 42 1 -1.8593 -5.4016 5.0740 43 1 -3.6502 -5.9033 7.1252 44 1 -2.2144 -5.4656 9.8791 45 1 -4.0056 -5.8325 9.6361 46 1 -3.4030 -8.0196 8.5014 47 1 -1.6121 -7.6526 8.7441 48 1 -0.3601 -4.9111 9.0528 49 1 3.1561 -0.6042 3.7813 50 1 1.6345 -0.2534 4.6385 51 1 1.8741 1.0351 2.4868 52 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731999280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:05 Heat of formation + Delta-G solvation = 63.480042 kcal Electronic energy + Delta-G solvation = -30223.351761 eV Core-core repulsion = 26224.976345 eV Total energy + Delta-G solvation = -3998.375417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.30176 -41.20580 -39.30354 -37.81732 -36.85441 -34.76040 -34.16188 -32.49943 -31.92165 -31.04331 -29.97468 -28.48453 -26.61091 -25.48785 -24.28729 -23.78547 -23.30271 -22.98905 -21.98698 -21.03769 -20.43406 -19.53346 -19.24333 -18.38158 -17.90956 -16.85434 -16.71913 -16.66988 -16.24161 -15.98413 -15.64349 -15.42854 -15.31056 -15.19950 -14.92475 -14.74482 -14.41197 -14.21674 -14.02843 -13.76561 -13.62322 -13.34537 -13.09816 -12.96450 -12.90340 -12.81348 -12.75505 -12.62598 -12.26806 -12.19206 -12.00484 -11.75707 -11.74902 -11.59638 -11.39171 -11.29105 -11.16538 -11.10058 -10.99529 -10.85536 -10.30614 -9.70235 -9.10870 -8.94438 -7.90960 -5.16677 0.91114 1.45043 1.47804 1.48710 1.49835 1.55813 1.81505 2.00235 2.58466 3.21297 3.26943 3.42509 3.60321 3.77473 3.80712 3.91027 3.96974 4.02375 4.09343 4.12375 4.14071 4.26407 4.27483 4.30365 4.35066 4.38980 4.54803 4.55119 4.66011 4.72990 4.76246 4.78978 4.87217 4.89850 4.94601 5.00119 5.08551 5.09178 5.14260 5.17834 5.27514 5.35939 5.37606 5.41297 5.42587 5.53563 5.59529 5.70149 5.72760 6.05505 6.32509 6.33194 6.76950 7.05179 7.39845 8.18254 8.41933 9.32011 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.001852 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.936335 B =15118.570791 C =15595.899389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.035 0.965 4 N -0.733 5.733 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.282 1.282 13 C -0.081 4.081 14 C -0.123 4.123 15 C 0.108 3.892 16 N -0.602 5.602 17 C 0.499 3.501 18 O -0.566 6.566 19 C 0.114 3.886 20 N -0.369 5.369 21 C 0.059 3.941 22 C -0.216 4.216 23 C -0.082 4.082 24 C -0.178 4.178 25 C -0.170 4.170 26 C 0.036 3.964 27 N -0.314 5.314 28 C 0.116 3.884 29 C -0.116 4.116 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.163 0.837 41 H 0.136 0.864 42 H 0.208 0.792 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.190 0.810 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 -9.898 21.779 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.053 0.947 4 N -0.374 5.374 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.209 1.209 13 C -0.100 4.100 14 C -0.161 4.161 15 C -0.014 4.014 16 N -0.335 5.335 17 C 0.287 3.713 18 O -0.445 6.445 19 C -0.011 4.011 20 N -0.151 5.151 21 C -0.086 4.086 22 C -0.227 4.227 23 C -0.101 4.101 24 C -0.215 4.215 25 C -0.207 4.207 26 C -0.151 4.151 27 N -0.135 5.135 28 C -0.006 4.006 29 C -0.155 4.155 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.211 0.789 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.181 0.819 41 H 0.153 0.847 42 H 0.225 0.775 43 H 0.138 0.862 44 H 0.109 0.891 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.206 0.794 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.382 -8.811 21.920 25.068 hybrid contribution -0.291 0.114 -1.215 1.254 sum -8.673 -8.698 20.706 24.075 Atomic orbital electron populations 1.22373 0.98206 1.00983 0.99977 1.20411 0.92545 0.94723 0.86036 0.94717 1.42632 1.78361 1.10518 1.05937 1.19540 1.34631 0.94012 0.88656 0.91334 1.25400 1.03309 0.96871 1.00951 1.69762 1.52753 1.09868 1.29284 0.85353 0.77732 0.77416 0.80105 1.20796 1.22263 1.20857 1.21244 0.99791 0.95427 0.93569 1.21888 1.01319 0.95366 0.97566 1.22000 1.01530 0.95444 0.82390 1.48180 1.56523 1.11200 1.17630 1.21027 0.77653 0.90243 0.82420 1.90748 1.55038 1.66070 1.32617 1.21859 1.01832 0.92391 0.84971 1.48136 1.14759 1.47196 1.05048 1.22824 0.87712 0.98106 0.99934 1.19549 0.98708 1.12267 0.92160 1.20245 0.94979 1.00864 0.94021 1.23038 1.03190 1.01130 0.94118 1.23033 1.02894 0.91074 1.03737 1.24065 0.92487 0.98007 1.00514 1.77417 1.24858 1.23216 0.87994 1.21559 1.00241 0.80158 0.98650 1.21897 1.01209 0.99625 0.92724 0.95385 0.91704 0.93144 0.78941 0.94157 0.91913 0.91068 0.91384 0.90085 0.86748 0.81926 0.84687 0.77532 0.86228 0.89068 0.87561 0.87450 0.89522 0.79369 0.90656 0.90481 0.90019 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 8.79 71.98 0.63 -4.48 16 2 C 0.17 6.15 2.72 44.99 0.12 6.27 16 3 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 4 N -0.73 -34.18 5.04 -322.94 -1.63 -35.81 16 5 C -0.24 -12.62 9.93 84.03 0.83 -11.79 16 6 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.97 -56.53 13.06 21.65 0.28 -56.24 16 9 Si 0.96 45.14 29.55 68.60 2.03 47.17 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C -0.08 -2.23 2.14 -10.77 -0.02 -2.26 16 14 C -0.12 -2.95 4.81 30.67 0.15 -2.80 16 15 C 0.11 1.87 6.34 86.36 0.55 2.42 16 16 N -0.60 -12.61 2.97 -818.90 -2.43 -15.04 16 17 C 0.50 11.86 7.73 87.66 0.68 12.54 16 18 O -0.57 -19.04 15.12 -3.02 -0.05 -19.09 16 19 C 0.11 1.81 5.34 85.64 0.46 2.26 16 20 N -0.37 -7.95 3.40 -351.80 -1.20 -9.14 16 21 C 0.06 1.01 11.36 83.54 0.95 1.96 16 22 C -0.22 -4.01 5.76 -20.14 -0.12 -4.13 16 23 C -0.08 -1.12 6.25 -11.54 -0.07 -1.19 16 24 C -0.18 -2.11 10.02 30.59 0.31 -1.80 16 25 C -0.17 -1.95 10.23 30.59 0.31 -1.63 16 26 C 0.04 0.80 11.35 85.24 0.97 1.77 16 27 N -0.31 -8.65 11.64 -57.02 -0.66 -9.31 16 28 C 0.12 2.63 6.43 86.36 0.56 3.18 16 29 C -0.12 -2.68 4.97 30.67 0.15 -2.53 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.76 6.46 -2.39 -0.02 1.75 16 32 H 0.05 1.62 6.46 -2.38 -0.02 1.60 16 33 H 0.38 18.39 6.04 -92.71 -0.56 17.83 16 34 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.68 6.51 -2.39 -0.02 1.66 16 37 H 0.07 1.96 6.46 -2.38 -0.02 1.95 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.18 5.93 -2.38 -0.01 1.16 16 40 H 0.16 1.29 7.62 -2.39 -0.02 1.27 16 41 H 0.14 1.58 7.94 -2.39 -0.02 1.56 16 42 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.12 6.97 -2.38 -0.02 1.11 16 45 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.19 3.37 7.19 -2.92 -0.02 3.34 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.08 1.97 7.01 -2.38 -0.02 1.95 16 51 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.07 1.61 6.51 -2.39 -0.02 1.60 16 Total: -1.00 -75.62 408.45 3.63 -71.99 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.37 Total: 31.27 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 6.92 Total: -5.78 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.64 Total: -125.55 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.62 3.63 -71.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731999280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.469 kcal (2) G-P(sol) polarization free energy of solvation -75.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds