Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 N 1.46501 * 109.46843 * 239.99964 * 2 1 3 5 5 C 1.36935 * 120.00016 * 85.00514 * 4 2 1 6 6 H 1.07996 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99840 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47241 * 119.99774 * 9 7 5 12 12 H 1.48492 * 109.47298 * 239.99996 * 9 7 5 13 13 C 1.53001 * 109.47310 * 120.00036 * 2 1 3 14 14 C 1.53041 * 109.46076 * 60.02226 * 13 2 1 15 15 C 1.53194 * 109.31391 * 178.60004 * 14 13 2 16 16 N 1.46921 * 108.76239 * 54.66068 * 15 14 13 17 17 C 1.34774 * 120.63159 * 126.35968 * 16 15 14 18 18 O 1.21613 * 120.00125 * 176.31274 * 17 16 15 19 19 C 1.47428 * 120.00155 * 356.31493 * 17 16 15 20 20 C 1.41290 * 126.41577 * 223.05171 * 19 17 16 21 21 N 1.30451 * 108.02163 * 179.88062 * 20 19 17 22 22 N 1.39938 * 108.89736 * 0.38469 * 21 20 19 23 23 C 1.46495 * 125.75303 * 179.73439 * 22 21 20 24 24 C 1.53000 * 109.47060 * 305.02256 * 23 22 21 25 25 C 1.52998 * 117.49666 * 243.74825 * 24 23 22 26 26 C 1.52996 * 117.49818 * 175.08974 * 24 23 22 27 27 C 1.34264 * 108.48943 * 359.75005 * 22 21 20 28 28 C 1.46929 * 118.73999 * 306.38326 * 16 15 14 29 29 C 1.53042 * 109.45922 * 299.97368 * 13 2 1 30 30 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47455 * 59.99848 * 1 2 3 32 32 H 1.09007 * 109.46883 * 299.99794 * 1 2 3 33 33 H 0.96999 * 119.99810 * 264.99855 * 4 2 1 34 34 H 0.96998 * 120.00680 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.46245 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.50021 * 298.56953 * 14 13 2 37 37 H 1.09002 * 109.49333 * 58.66476 * 14 13 2 38 38 H 1.09001 * 109.59898 * 294.87358 * 15 14 13 39 39 H 1.08996 * 109.70241 * 174.50500 * 15 14 13 40 40 H 1.08002 * 125.98816 * 0.02562 * 20 19 17 41 41 H 1.08997 * 109.47457 * 65.02573 * 23 22 21 42 42 H 1.09004 * 109.47131 * 185.02360 * 23 22 21 43 43 H 1.08999 * 115.54917 * 29.42178 * 24 23 22 44 44 H 1.08997 * 117.50017 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49878 * 145.02136 * 25 24 23 46 46 H 1.09003 * 117.50148 * 214.98019 * 26 24 23 47 47 H 1.09003 * 117.50110 * 359.97438 * 26 24 23 48 48 H 1.07995 * 126.28690 * 180.02562 * 27 22 21 49 49 H 1.09003 * 109.58377 * 293.82170 * 28 16 15 50 50 H 1.09001 * 109.59177 * 173.39736 * 28 16 15 51 51 H 1.09001 * 109.49486 * 301.33388 * 29 13 2 52 52 H 1.08999 * 109.50303 * 61.39649 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9391 -3.4502 9 14 2.7891 0.2696 -5.1185 10 1 2.3755 1.6821 -4.9210 11 1 4.2059 0.2265 -5.5615 12 1 1.9279 -0.3589 -6.1522 13 6 2.0400 -0.7213 1.2492 14 6 1.5302 -2.1643 1.2487 15 6 2.0714 -2.8933 2.4826 16 7 1.7086 -2.1259 3.6818 17 6 1.0552 -2.7153 4.7026 18 8 0.8197 -2.0876 5.7172 19 6 0.6259 -4.1212 4.5893 20 6 -0.6212 -4.6521 4.9881 21 7 -0.6195 -5.9294 4.7229 22 7 0.6138 -6.2734 4.1583 23 6 1.0132 -7.6151 3.7267 24 6 0.8481 -8.5952 4.8900 25 6 2.1110 -9.2684 5.4311 26 6 1.1054 -10.0767 4.6074 27 6 1.3695 -5.1664 4.0792 28 6 2.0712 -0.7035 3.7469 29 6 1.5303 0.0008 2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 2.2489 -1.6318 -1.1526 34 1 3.2474 -2.3964 -4.2422 35 1 3.1300 -0.7216 1.2488 36 1 0.4405 -2.1652 1.2741 37 1 1.8740 -2.6712 0.3470 38 1 3.1564 -2.9725 2.4139 39 1 1.6352 -3.8904 2.5411 40 1 -1.4344 -4.0972 5.4324 41 1 0.3851 -7.9309 2.8937 42 1 2.0560 -7.5995 3.4099 43 1 0.0636 -8.3481 5.6052 44 1 3.0594 -9.0127 4.9587 45 1 2.1572 -9.4646 6.5023 46 1 0.4904 -10.8043 5.1370 47 1 1.3918 -10.3532 3.5927 48 1 2.3742 -5.1050 3.6880 49 1 3.1561 -0.6042 3.7813 50 1 1.6327 -0.2550 4.6384 51 1 1.8741 1.0351 2.4868 52 1 0.4406 -0.0202 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732003260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 81.213913 kcal Electronic energy + Delta-G solvation = -30691.696017 eV Core-core repulsion = 26694.089598 eV Total energy + Delta-G solvation = -3997.606418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67455 -39.81367 -38.05570 -37.74281 -35.35093 -33.21337 -32.96285 -31.64206 -30.51442 -30.06030 -28.21914 -27.55727 -25.40939 -23.99004 -23.21140 -22.90342 -22.60210 -22.05892 -21.14371 -20.60770 -19.56615 -18.56445 -17.42985 -17.28669 -16.75425 -15.95145 -15.86199 -15.51688 -15.01217 -14.79743 -14.67860 -14.36191 -14.19284 -13.96823 -13.82593 -13.60997 -13.40239 -13.05863 -12.90249 -12.86021 -12.54574 -12.22145 -12.14328 -12.03253 -11.88731 -11.53922 -11.36149 -11.07825 -11.03115 -10.96526 -10.86913 -10.59736 -10.56421 -10.31636 -10.24951 -10.08173 -9.87040 -9.79834 -9.60261 -9.53360 -8.91872 -8.81344 -8.48824 -6.95170 -5.78087 -3.05265 1.39215 2.04805 2.15720 2.95144 3.24946 3.28568 3.41775 3.48152 3.49705 3.89536 4.28410 4.36555 4.44525 4.49117 4.58049 4.62165 4.84052 4.88640 4.94090 5.00058 5.12085 5.14624 5.16850 5.26162 5.34867 5.38309 5.41472 5.44629 5.54606 5.55940 5.59665 5.68044 5.69176 5.83931 5.86200 6.00162 6.02478 6.16812 6.23736 6.25965 6.32572 6.33941 6.51750 6.56410 6.63507 6.71254 6.78381 6.94353 7.17862 7.35385 7.49561 7.70832 8.26059 8.41790 9.52956 10.11788 10.46280 11.45036 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.002503 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.914666 B =11182.044510 C =13060.407012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.089 4.089 14 C -0.127 4.127 15 C 0.098 3.902 16 N -0.602 5.602 17 C 0.595 3.405 18 O -0.549 6.549 19 C -0.280 4.280 20 C 0.099 3.901 21 N -0.295 5.295 22 N -0.355 5.355 23 C 0.161 3.839 24 C -0.171 4.171 25 C -0.178 4.178 26 C -0.169 4.169 27 C 0.095 3.905 28 C 0.115 3.885 29 C -0.128 4.128 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.190 0.810 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.184 0.816 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -12.282 18.189 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.364 4.364 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.109 4.109 14 C -0.165 4.165 15 C -0.025 4.025 16 N -0.335 5.335 17 C 0.383 3.617 18 O -0.427 6.427 19 C -0.295 4.295 20 C -0.088 4.088 21 N -0.115 5.115 22 N -0.134 5.134 23 C 0.040 3.960 24 C -0.190 4.190 25 C -0.215 4.215 26 C -0.206 4.206 27 C -0.056 4.056 28 C -0.008 4.008 29 C -0.167 4.167 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.207 0.793 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.201 0.799 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.092 0.908 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.515 -13.051 18.568 22.835 hybrid contribution 0.691 0.851 -1.221 1.641 sum -1.824 -12.200 17.347 21.286 Atomic orbital electron populations 1.22526 0.99573 1.00811 0.99740 1.20200 0.91742 0.95187 0.86110 0.93632 1.42494 1.78130 1.10690 1.05344 1.19303 1.35840 0.93875 0.87403 0.91236 1.24702 1.02463 0.95988 0.97978 1.69651 1.51424 1.08653 1.28694 0.86153 0.77254 0.78837 0.84190 1.20618 1.21962 1.21981 1.21383 1.00269 0.94555 0.94656 1.21960 1.01327 0.96276 0.96950 1.22110 0.99990 0.95770 0.84635 1.47990 1.57076 1.10955 1.17446 1.17341 0.76764 0.85079 0.82484 1.90753 1.56917 1.65530 1.29502 1.20258 0.98134 0.94477 1.16598 1.23920 0.97036 0.90880 0.96955 1.77167 1.00714 1.15206 1.18432 1.48436 1.10816 1.07533 1.46592 1.21419 1.01440 0.76938 0.96213 1.22556 1.01675 0.93813 1.00936 1.23134 0.93785 1.04044 1.00551 1.22996 1.02933 0.92931 1.01754 1.23140 0.98119 0.86135 0.98190 1.21625 0.99719 0.79888 0.99522 1.22018 1.01575 0.99282 0.93832 0.93387 0.93209 0.94355 0.78251 0.93686 0.91108 0.91357 0.89798 0.91306 0.89647 0.79286 0.88605 0.88090 0.86325 0.88402 0.88525 0.88257 0.88234 0.79867 0.91644 0.89261 0.90801 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.79 37.16 0.33 -2.64 16 2 C 0.18 3.35 2.72 -67.93 -0.18 3.16 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.27 5.04 -53.43 -0.27 -17.54 16 5 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -27.43 13.06 55.49 0.72 -26.71 16 9 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 C -0.09 -1.35 2.14 -90.58 -0.19 -1.54 16 14 C -0.13 -1.81 4.81 -26.61 -0.13 -1.94 16 15 C 0.10 1.12 5.71 -3.71 -0.02 1.10 16 16 N -0.60 -7.63 2.97 -174.03 -0.52 -8.14 16 17 C 0.60 8.36 7.59 -12.52 -0.10 8.26 16 18 O -0.55 -9.41 16.53 5.27 0.09 -9.32 16 19 C -0.28 -3.39 5.35 -105.07 -0.56 -3.96 16 20 C 0.10 1.18 12.02 -16.98 -0.20 0.98 16 21 N -0.30 -3.49 12.14 30.86 0.37 -3.12 16 22 N -0.36 -3.43 3.65 -60.81 -0.22 -3.66 16 23 C 0.16 1.06 6.77 -4.04 -0.03 1.03 16 24 C -0.17 -1.14 5.92 -90.62 -0.54 -1.67 16 25 C -0.18 -0.98 10.18 -26.70 -0.27 -1.25 16 26 C -0.17 -0.86 10.25 -26.70 -0.27 -1.13 16 27 C 0.09 0.91 9.02 -16.56 -0.15 0.76 16 28 C 0.11 1.42 6.42 -3.71 -0.02 1.39 16 29 C -0.13 -1.66 4.97 -26.61 -0.13 -1.79 16 30 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.58 6.46 -51.92 -0.34 0.25 16 33 H 0.38 9.52 6.04 -40.82 -0.25 9.27 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 37 H 0.08 1.36 6.46 -51.93 -0.34 1.02 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.88 4.17 -51.93 -0.22 0.66 16 40 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.43 7.80 -51.93 -0.40 0.03 16 43 H 0.12 1.02 7.90 -51.93 -0.41 0.61 16 44 H 0.10 0.45 8.03 -51.93 -0.42 0.04 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.18 1.24 7.08 -52.49 -0.37 0.87 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.16 7.02 -51.93 -0.36 0.80 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -33.32 408.34 -9.72 -43.05 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.31 Total: 8.41 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.72 Total: -6.21 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.09 Total: -59.16 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.32 -9.72 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732003260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.259 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds