Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47256 * 2 1 4 4 N 1.46501 * 109.46843 * 239.99964 * 2 1 3 5 5 C 1.36935 * 120.00016 * 85.00514 * 4 2 1 6 6 H 1.07996 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99840 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00041 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47241 * 119.99774 * 9 7 5 12 12 H 1.48492 * 109.47298 * 239.99996 * 9 7 5 13 13 C 1.53001 * 109.47310 * 120.00036 * 2 1 3 14 14 C 1.53041 * 109.46076 * 60.02226 * 13 2 1 15 15 C 1.53194 * 109.31391 * 178.60004 * 14 13 2 16 16 N 1.46921 * 108.76239 * 54.66068 * 15 14 13 17 17 C 1.34774 * 120.63159 * 126.35968 * 16 15 14 18 18 O 1.21613 * 120.00125 * 176.31274 * 17 16 15 19 19 C 1.47428 * 120.00155 * 356.31493 * 17 16 15 20 20 C 1.41290 * 126.41577 * 223.05171 * 19 17 16 21 21 N 1.30451 * 108.02163 * 179.88062 * 20 19 17 22 22 N 1.39938 * 108.89736 * 0.38469 * 21 20 19 23 23 C 1.46495 * 125.75303 * 179.73439 * 22 21 20 24 24 C 1.53000 * 109.47060 * 305.02256 * 23 22 21 25 25 C 1.52998 * 117.49666 * 243.74825 * 24 23 22 26 26 C 1.52996 * 117.49818 * 175.08974 * 24 23 22 27 27 C 1.34264 * 108.48943 * 359.75005 * 22 21 20 28 28 C 1.46929 * 118.73999 * 306.38326 * 16 15 14 29 29 C 1.53042 * 109.45922 * 299.97368 * 13 2 1 30 30 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47455 * 59.99848 * 1 2 3 32 32 H 1.09007 * 109.46883 * 299.99794 * 1 2 3 33 33 H 0.96999 * 119.99810 * 264.99855 * 4 2 1 34 34 H 0.96998 * 120.00680 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.46245 * 179.97438 * 13 2 1 36 36 H 1.09000 * 109.50021 * 298.56953 * 14 13 2 37 37 H 1.09002 * 109.49333 * 58.66476 * 14 13 2 38 38 H 1.09001 * 109.59898 * 294.87358 * 15 14 13 39 39 H 1.08996 * 109.70241 * 174.50500 * 15 14 13 40 40 H 1.08002 * 125.98816 * 0.02562 * 20 19 17 41 41 H 1.08997 * 109.47457 * 65.02573 * 23 22 21 42 42 H 1.09004 * 109.47131 * 185.02360 * 23 22 21 43 43 H 1.08999 * 115.54917 * 29.42178 * 24 23 22 44 44 H 1.08997 * 117.50017 * 0.02562 * 25 24 23 45 45 H 1.09003 * 117.49878 * 145.02136 * 25 24 23 46 46 H 1.09003 * 117.50148 * 214.98019 * 26 24 23 47 47 H 1.09003 * 117.50110 * 359.97438 * 26 24 23 48 48 H 1.07995 * 126.28690 * 180.02562 * 27 22 21 49 49 H 1.09003 * 109.58377 * 293.82170 * 28 16 15 50 50 H 1.09001 * 109.59177 * 173.39736 * 28 16 15 51 51 H 1.09001 * 109.49486 * 301.33388 * 29 13 2 52 52 H 1.08999 * 109.50303 * 61.39649 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9391 -3.4502 9 14 2.7891 0.2696 -5.1185 10 1 2.3755 1.6821 -4.9210 11 1 4.2059 0.2265 -5.5615 12 1 1.9279 -0.3589 -6.1522 13 6 2.0400 -0.7213 1.2492 14 6 1.5302 -2.1643 1.2487 15 6 2.0714 -2.8933 2.4826 16 7 1.7086 -2.1259 3.6818 17 6 1.0552 -2.7153 4.7026 18 8 0.8197 -2.0876 5.7172 19 6 0.6259 -4.1212 4.5893 20 6 -0.6212 -4.6521 4.9881 21 7 -0.6195 -5.9294 4.7229 22 7 0.6138 -6.2734 4.1583 23 6 1.0132 -7.6151 3.7267 24 6 0.8481 -8.5952 4.8900 25 6 2.1110 -9.2684 5.4311 26 6 1.1054 -10.0767 4.6074 27 6 1.3695 -5.1664 4.0792 28 6 2.0712 -0.7035 3.7469 29 6 1.5303 0.0008 2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 2.2489 -1.6318 -1.1526 34 1 3.2474 -2.3964 -4.2422 35 1 3.1300 -0.7216 1.2488 36 1 0.4405 -2.1652 1.2741 37 1 1.8740 -2.6712 0.3470 38 1 3.1564 -2.9725 2.4139 39 1 1.6352 -3.8904 2.5411 40 1 -1.4344 -4.0972 5.4324 41 1 0.3851 -7.9309 2.8937 42 1 2.0560 -7.5995 3.4099 43 1 0.0636 -8.3481 5.6052 44 1 3.0594 -9.0127 4.9587 45 1 2.1572 -9.4646 6.5023 46 1 0.4904 -10.8043 5.1370 47 1 1.3918 -10.3532 3.5927 48 1 2.3742 -5.1050 3.6880 49 1 3.1561 -0.6042 3.7813 50 1 1.6327 -0.2550 4.6384 51 1 1.8741 1.0351 2.4868 52 1 0.4406 -0.0202 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732003260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = 61.946701 kcal Electronic energy + Delta-G solvation = -30692.531506 eV Core-core repulsion = 26694.089598 eV Total energy + Delta-G solvation = -3998.441907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50523 -40.86942 -39.13447 -38.40567 -36.79254 -34.66139 -33.89311 -32.86033 -31.93263 -31.06134 -29.78437 -28.27501 -26.70494 -25.66522 -24.32733 -23.77089 -23.29593 -22.73893 -22.20800 -21.41233 -20.57942 -19.73850 -19.20172 -18.28717 -17.74162 -16.86873 -16.67411 -16.58519 -16.26616 -16.04362 -15.67743 -15.43917 -15.34894 -15.21588 -14.85335 -14.78720 -14.34249 -14.21084 -14.11118 -13.82798 -13.68437 -13.60734 -13.06679 -12.93372 -12.85968 -12.76472 -12.70285 -12.61218 -12.40014 -12.09366 -11.99193 -11.88809 -11.72119 -11.56376 -11.43169 -11.21944 -11.11382 -11.05093 -10.91072 -10.85131 -10.47164 -9.75178 -9.47533 -8.93348 -7.90208 -5.15808 0.59920 1.21790 1.37999 1.48259 1.49319 1.58189 1.95771 2.30465 2.59083 2.82232 3.29668 3.43547 3.65703 3.76312 3.81521 3.84934 3.89849 3.97300 3.99319 4.03083 4.16785 4.22134 4.27817 4.33895 4.40381 4.45410 4.53007 4.57524 4.61509 4.67521 4.70701 4.77565 4.77771 4.84481 4.93085 4.99199 4.99430 5.04803 5.13278 5.16761 5.18527 5.22459 5.30730 5.37901 5.41268 5.46914 5.57871 5.65717 5.74722 5.89451 6.34017 6.43534 6.56876 7.21690 7.40579 8.19074 8.42686 9.33427 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.002503 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.914666 B =11182.044510 C =13060.407012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.039 0.961 4 N -0.733 5.733 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.297 1.297 13 C -0.079 4.079 14 C -0.121 4.121 15 C 0.105 3.895 16 N -0.599 5.599 17 C 0.596 3.404 18 O -0.587 6.587 19 C -0.306 4.306 20 C 0.088 3.912 21 N -0.317 5.317 22 N -0.350 5.350 23 C 0.154 3.846 24 C -0.184 4.184 25 C -0.176 4.176 26 C -0.160 4.160 27 C 0.110 3.890 28 C 0.116 3.884 29 C -0.119 4.119 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.194 0.806 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.218 0.782 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 -12.746 18.361 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.057 0.943 4 N -0.375 5.375 5 C -0.364 4.364 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.221 1.221 12 H -0.224 1.224 13 C -0.098 4.098 14 C -0.159 4.159 15 C -0.017 4.017 16 N -0.330 5.330 17 C 0.386 3.614 18 O -0.468 6.468 19 C -0.321 4.321 20 C -0.099 4.099 21 N -0.138 5.138 22 N -0.129 5.129 23 C 0.034 3.966 24 C -0.203 4.203 25 C -0.213 4.213 26 C -0.197 4.197 27 C -0.042 4.042 28 C -0.006 4.006 29 C -0.157 4.157 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.211 0.789 41 H 0.119 0.881 42 H 0.150 0.850 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.132 0.868 48 H 0.234 0.766 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.496 -13.504 18.756 23.160 hybrid contribution 0.335 0.975 -1.231 1.606 sum -1.161 -12.528 17.525 21.574 Atomic orbital electron populations 1.22382 0.98545 1.00633 1.00047 1.20423 0.92295 0.94892 0.86072 0.94276 1.42666 1.78265 1.10520 1.06036 1.19621 1.34201 0.94014 0.88590 0.91219 1.25406 1.03449 0.96884 1.00955 1.69781 1.53001 1.09906 1.29118 0.85205 0.76722 0.78167 0.80498 1.19493 1.22144 1.22428 1.21239 0.99948 0.94942 0.93701 1.21845 1.00691 0.95851 0.97527 1.22126 1.01080 0.95808 0.82675 1.48028 1.56551 1.11138 1.17331 1.17566 0.76147 0.85622 0.82065 1.90728 1.58468 1.66623 1.31011 1.20212 0.98892 0.94202 1.18804 1.24103 0.97538 0.91115 0.97140 1.77131 1.02229 1.15136 1.19271 1.48716 1.10045 1.08628 1.45466 1.21765 1.03291 0.75361 0.96158 1.22424 1.01899 0.95018 1.00962 1.23217 0.93935 1.03494 1.00616 1.23082 1.02347 0.91800 1.02486 1.23569 0.98832 0.85263 0.96498 1.21636 1.00594 0.79681 0.98708 1.21927 1.01128 0.99829 0.92824 0.93807 0.95304 0.91573 0.79042 0.94193 0.91414 0.92313 0.91787 0.89360 0.88116 0.78874 0.88120 0.85029 0.88864 0.87006 0.88922 0.88220 0.86792 0.76611 0.90053 0.89831 0.89502 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 8.79 71.98 0.63 -4.81 16 2 C 0.17 6.34 2.72 44.99 0.12 6.46 16 3 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 4 N -0.73 -34.92 5.04 -322.94 -1.63 -36.55 16 5 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 8 N -0.97 -57.08 13.06 21.65 0.28 -56.80 16 9 Si 0.96 45.50 29.55 68.60 2.03 47.52 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 13 C -0.08 -2.27 2.14 -10.77 -0.02 -2.30 16 14 C -0.12 -3.29 4.81 30.67 0.15 -3.15 16 15 C 0.11 2.17 5.71 86.36 0.49 2.66 16 16 N -0.60 -14.04 2.97 -822.77 -2.45 -16.49 16 17 C 0.60 16.14 7.59 86.66 0.66 16.79 16 18 O -0.59 -20.02 16.53 -4.07 -0.07 -20.09 16 19 C -0.31 -7.10 5.35 -20.15 -0.11 -7.20 16 20 C 0.09 2.09 12.02 85.65 1.03 3.12 16 21 N -0.32 -7.39 12.14 -56.27 -0.68 -8.08 16 22 N -0.35 -6.19 3.65 -346.31 -1.26 -7.45 16 23 C 0.15 1.68 6.77 86.38 0.58 2.26 16 24 C -0.18 -2.21 5.92 -10.80 -0.06 -2.27 16 25 C -0.18 -1.59 10.18 30.62 0.31 -1.28 16 26 C -0.16 -1.33 10.25 30.62 0.31 -1.01 16 27 C 0.11 1.87 9.02 84.27 0.76 2.63 16 28 C 0.12 2.63 6.42 86.36 0.55 3.19 16 29 C -0.12 -2.83 4.97 30.67 0.15 -2.67 16 30 H 0.04 1.54 6.46 -2.39 -0.02 1.53 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.91 6.46 -2.38 -0.02 1.90 16 33 H 0.38 18.81 6.04 -92.71 -0.56 18.25 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.71 6.51 -2.39 -0.02 1.70 16 37 H 0.06 2.04 6.46 -2.39 -0.02 2.02 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.79 4.17 -2.39 -0.01 1.78 16 40 H 0.19 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.13 0.63 7.80 -2.39 -0.02 0.61 16 43 H 0.09 1.62 7.90 -2.39 -0.02 1.60 16 44 H 0.11 0.70 8.03 -2.39 -0.02 0.68 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.22 2.06 7.08 -2.91 -0.02 2.04 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.08 2.06 7.02 -2.39 -0.02 2.04 16 51 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.06 1.63 6.51 -2.39 -0.02 1.61 16 Total: -1.00 -72.46 408.34 3.46 -69.00 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.37 Total: 31.92 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.87 Total: -2.99 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.74 Total: -125.37 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.07 Total: -20.09 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.46 3.46 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732003260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.951 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds