Wall clock time and date at job start Wed Apr 1 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.46812 * 2 1 4 4 N 1.46500 * 109.47357 * 240.00218 * 2 1 3 5 5 C 1.36939 * 120.00226 * 84.99600 * 4 2 1 6 6 H 1.08006 * 119.99928 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99919 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00212 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47420 * 89.99831 * 9 7 5 11 11 H 1.48499 * 109.46835 * 209.99915 * 9 7 5 12 12 H 1.48503 * 109.46835 * 329.99315 * 9 7 5 13 13 C 1.52997 * 109.47386 * 120.00028 * 2 1 3 14 14 H 1.08996 * 109.50010 * 179.97438 * 13 2 1 15 15 C 1.53044 * 109.49501 * 300.00267 * 13 2 1 16 16 C 1.53043 * 109.53637 * 181.31630 * 15 13 2 17 17 C 1.53192 * 109.31336 * 298.63557 * 16 15 13 18 18 N 1.46922 * 108.77704 * 54.63163 * 17 16 15 19 19 C 1.34780 * 120.63113 * 126.36753 * 18 17 16 20 20 O 1.21631 * 120.00103 * 186.24492 * 19 18 17 21 21 C 1.47163 * 119.99615 * 6.25061 * 19 18 17 22 22 C 1.38409 * 126.88852 * 20.08796 * 21 19 18 23 23 C 1.39665 * 105.35865 * 180.22828 * 22 21 19 24 24 N 1.30859 * 107.86796 * 359.76253 * 23 22 21 25 25 N 1.28450 * 110.92236 * 0.02562 * 24 23 22 26 26 C 1.46499 * 125.18764 * 179.97438 * 25 24 23 27 27 C 1.53779 * 113.61812 * 329.27874 * 26 25 24 28 28 C 1.53784 * 87.07956 * 89.11749 * 27 26 25 29 29 C 1.53774 * 87.08239 * 25.43529 * 28 27 26 30 30 C 1.46922 * 118.74090 * 306.64992 * 18 17 16 31 31 H 1.09003 * 109.47218 * 299.99856 * 1 2 3 32 32 H 1.09003 * 109.47649 * 60.00250 * 1 2 3 33 33 H 1.09005 * 109.47248 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00286 * 265.00113 * 4 2 1 35 35 H 0.96995 * 119.99704 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46038 * 61.29237 * 15 13 2 37 37 H 1.08997 * 109.44770 * 301.32487 * 15 13 2 38 38 H 1.08998 * 109.49697 * 178.67649 * 16 15 13 39 39 H 1.09003 * 109.52484 * 58.59829 * 16 15 13 40 40 H 1.09004 * 109.58048 * 294.84734 * 17 16 15 41 41 H 1.09003 * 109.58716 * 174.42401 * 17 16 15 42 42 H 1.07999 * 127.31760 * 0.02562 * 22 21 19 43 43 H 1.08005 * 126.06833 * 179.74085 * 23 22 21 44 44 H 1.09005 * 112.90628 * 198.02824 * 26 25 24 45 45 H 1.08997 * 113.61683 * 203.66416 * 27 26 25 46 46 H 1.09000 * 113.61365 * 334.57281 * 27 26 25 47 47 H 1.08999 * 113.61238 * 270.88547 * 28 27 26 48 48 H 1.09002 * 113.61665 * 139.99046 * 28 27 26 49 49 H 1.09001 * 113.61427 * 220.01830 * 29 28 27 50 50 H 1.09000 * 113.69436 * 89.12743 * 29 28 27 51 51 H 1.09002 * 109.58861 * 173.14452 * 30 18 17 52 52 H 1.09006 * 109.58390 * 293.56563 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8925 1.0406 -2.4242 7 6 2.6113 -0.6618 -3.5093 8 7 2.9245 -1.9389 -3.4502 9 14 2.7903 0.2702 -5.1182 10 1 4.1529 0.8544 -5.2030 11 1 2.5793 -0.6608 -6.2557 12 1 1.7809 1.3579 -5.1751 13 6 2.0400 -0.7212 1.2492 14 1 3.1299 -0.7219 1.2494 15 6 1.5301 -0.0003 2.4992 16 6 2.0667 -0.7016 3.7492 17 6 1.5534 -2.1446 3.7801 18 7 1.9150 -2.8024 2.5171 19 6 2.5907 -3.9685 2.5190 20 8 2.9834 -4.4456 1.4713 21 6 2.8534 -4.6646 3.7887 22 6 2.1795 -4.4926 4.9853 23 6 2.7956 -5.3648 5.8855 24 7 3.7492 -5.9934 5.2468 25 7 3.8095 -5.6119 4.0217 26 6 4.7621 -6.1125 3.0276 27 6 6.1128 -6.5369 3.6277 28 6 5.4989 -7.9336 3.8209 29 6 4.5498 -7.5907 2.6607 30 6 1.5313 -2.1616 1.2518 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 3.2478 -2.3961 -4.2422 36 1 0.4404 -0.0205 2.5109 37 1 1.8740 1.0340 2.4873 38 1 1.7224 -0.1737 4.6385 39 1 3.1565 -0.7035 3.7263 40 1 0.4695 -2.1444 3.8948 41 1 2.0111 -2.6774 4.6137 42 1 1.3550 -3.8234 5.1821 43 1 2.5321 -5.4968 6.9246 44 1 4.8557 -5.4568 2.1619 45 1 6.9345 -6.5164 2.9118 46 1 6.3528 -6.0322 4.5635 47 1 4.9916 -8.0590 4.7775 48 1 6.1873 -8.7482 3.5959 49 1 3.5278 -7.9367 2.8157 50 1 4.9427 -7.8579 1.6797 51 1 1.9743 -2.7057 0.4176 52 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:16 Heat of formation + Delta-G solvation = 74.020336 kcal Electronic energy + Delta-G solvation = -31797.943551 eV Core-core repulsion = 27800.025195 eV Total energy + Delta-G solvation = -3997.918355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.75085 -41.21426 -39.47189 -39.14236 -37.03100 -34.80667 -33.26541 -32.62542 -32.38689 -31.10537 -29.33228 -27.21739 -26.79938 -26.41861 -26.19458 -24.76602 -23.70699 -22.68715 -22.29180 -21.73750 -20.12339 -19.47365 -19.21425 -18.22541 -17.57881 -17.20279 -16.89737 -16.70495 -16.45085 -16.01535 -15.90282 -15.53807 -15.40433 -15.36444 -15.24954 -14.64805 -14.49511 -14.15926 -13.99303 -13.97717 -13.76887 -13.50344 -13.36211 -13.32698 -12.97940 -12.84009 -12.64386 -12.35006 -12.17064 -12.00400 -11.89294 -11.79949 -11.74069 -11.68616 -11.68124 -11.50868 -11.28119 -11.17654 -11.01200 -10.92452 -10.26128 -9.93004 -9.63346 -9.00998 -7.92809 -5.22145 0.19980 1.21411 1.44160 1.46578 1.54903 1.64716 1.94944 2.06297 2.55537 3.19954 3.30170 3.39962 3.44429 3.73579 3.74073 3.78617 3.88298 3.92191 3.99354 4.07584 4.12241 4.16879 4.30524 4.38943 4.48450 4.55427 4.61583 4.62300 4.65067 4.69506 4.72015 4.78757 4.83472 4.84071 4.88677 4.91826 4.92198 4.99230 5.10976 5.12123 5.15269 5.24410 5.25039 5.37816 5.45007 5.48601 5.54397 5.56427 5.69661 5.81227 6.26765 6.28469 6.93687 7.10797 7.33430 8.12254 8.33096 9.30598 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011819 B = 0.003090 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.544019 B = 9058.906121 C =10992.456609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.046 0.954 4 N -0.742 5.742 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.298 1.298 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.040 0.960 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.068 3.932 18 N -0.587 5.587 19 C 0.572 3.428 20 O -0.584 6.584 21 C -0.055 4.055 22 C -0.184 4.184 23 C -0.001 4.001 24 N -0.289 5.289 25 N -0.249 5.249 26 C 0.096 3.904 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.139 4.139 30 C 0.127 3.873 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.048 0.952 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.207 0.793 43 H 0.226 0.774 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.058 0.942 50 H 0.109 0.891 51 H 0.049 0.951 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -4.589 26.240 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.064 0.936 4 N -0.383 5.383 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.059 0.941 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.052 4.052 18 N -0.318 5.318 19 C 0.360 3.640 20 O -0.464 6.464 21 C -0.183 4.183 22 C -0.212 4.212 23 C -0.177 4.177 24 N -0.120 5.120 25 N -0.037 5.037 26 C -0.006 4.006 27 C -0.165 4.165 28 C -0.159 4.159 29 C -0.177 4.177 30 C 0.005 3.995 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.144 0.856 42 H 0.224 0.776 43 H 0.243 0.757 44 H 0.117 0.883 45 H 0.132 0.868 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.076 0.924 50 H 0.127 0.873 51 H 0.067 0.933 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.879 -5.516 25.602 26.204 hybrid contribution -0.172 0.511 -2.076 2.145 sum -1.051 -5.005 23.525 24.075 Atomic orbital electron populations 1.22397 0.97110 1.00938 1.01205 1.20473 0.93366 0.94822 0.84967 0.93572 1.42810 1.78527 1.10369 1.06583 1.19654 1.34567 0.94169 0.88341 0.90414 1.25596 1.03254 0.96825 1.01648 1.69873 1.52845 1.10419 1.29256 0.85151 0.77871 0.77438 0.79402 1.21614 1.22517 1.19065 1.21522 0.98998 0.94122 0.96464 0.94127 1.21636 1.02015 0.99217 0.91819 1.21929 1.00428 0.94935 0.99267 1.23050 1.02706 0.94164 0.85255 1.47888 1.54683 1.20199 1.09059 1.17502 0.78133 0.81432 0.86918 1.90839 1.53252 1.67635 1.34713 1.21423 0.99473 1.00411 0.96962 1.22996 1.04191 1.04282 0.89759 1.24344 0.94459 0.96538 1.02320 1.73128 1.23216 1.23911 0.91787 1.45447 1.24028 1.26751 1.07453 1.22771 0.90321 0.98053 0.89449 1.23198 0.94037 0.97352 1.01890 1.22856 0.97910 0.96932 0.98225 1.23277 1.00908 0.92281 1.01272 1.21486 1.00010 0.93150 0.84898 0.89759 0.94816 0.93775 0.79787 0.94326 0.89307 0.90710 0.86610 0.93336 0.87970 0.85556 0.77627 0.75737 0.88271 0.86758 0.90550 0.89456 0.88938 0.92358 0.87260 0.93278 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 8.79 71.98 0.63 -4.56 16 2 C 0.17 6.68 2.72 44.99 0.12 6.80 16 3 H 0.05 1.81 8.08 -2.38 -0.02 1.80 16 4 N -0.74 -38.81 5.04 -322.94 -1.63 -40.44 16 5 C -0.24 -13.46 9.93 84.03 0.83 -12.62 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 8 N -0.97 -63.11 13.06 21.65 0.28 -62.83 16 9 Si 0.97 47.86 29.55 68.60 2.03 49.89 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C -0.09 -2.95 2.32 -10.86 -0.03 -2.97 16 14 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.11 -2.27 4.78 30.62 0.15 -2.12 16 16 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 17 C 0.07 1.14 5.25 86.36 0.45 1.59 16 18 N -0.59 -16.71 2.98 -823.91 -2.45 -19.16 16 19 C 0.57 19.46 7.58 86.59 0.66 20.12 16 20 O -0.58 -25.77 14.41 -4.13 -0.06 -25.83 16 21 C -0.05 -1.49 6.63 40.79 0.27 -1.22 16 22 C -0.18 -3.25 8.72 22.66 0.20 -3.05 16 23 C 0.00 -0.02 12.03 85.18 1.02 1.01 16 24 N -0.29 -6.64 10.12 -57.14 -0.58 -7.22 16 25 N -0.25 -6.74 3.48 -311.80 -1.09 -7.83 16 26 C 0.10 2.58 4.36 45.52 0.20 2.78 16 27 C -0.13 -2.54 7.55 31.12 0.24 -2.31 16 28 C -0.12 -2.24 7.69 31.12 0.24 -2.00 16 29 C -0.14 -3.22 7.88 31.12 0.25 -2.97 16 30 C 0.13 4.36 5.21 86.22 0.45 4.81 16 31 H 0.08 2.04 6.46 -2.39 -0.02 2.02 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.49 6.32 -2.38 -0.02 1.48 16 34 H 0.37 21.46 6.17 -92.71 -0.57 20.89 16 35 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.09 1.54 6.50 -2.39 -0.02 1.52 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.13 1.70 3.57 -2.39 -0.01 1.69 16 42 H 0.21 2.04 5.74 -2.91 -0.02 2.02 16 43 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.10 3.28 6.45 -2.38 -0.02 3.26 16 45 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 47 H 0.09 1.73 7.21 -2.39 -0.02 1.71 16 48 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.05 2.24 5.58 -2.39 -0.01 2.23 16 52 H 0.09 2.68 6.16 -2.38 -0.01 2.67 16 Total: -1.00 -80.77 394.91 3.21 -77.56 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: 0.37 Total: 38.87 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 6.33 Total: -3.01 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -5.46 Total: -137.47 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -80.77 3.21 -77.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.581 kcal (2) G-P(sol) polarization free energy of solvation -80.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds