Wall clock time and date at job start Wed Apr 1 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47252 * 2 1 4 4 N 1.46501 * 109.47518 * 120.00481 * 2 1 3 5 5 C 1.36936 * 119.99659 * 275.00127 * 4 2 1 6 6 H 1.08002 * 120.00313 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00043 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00066 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99791 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47130 * 89.99895 * 9 7 5 11 11 H 1.48499 * 109.47394 * 210.00007 * 9 7 5 12 12 H 1.48496 * 109.47127 * 330.00253 * 9 7 5 13 13 C 1.53002 * 109.46963 * 240.00432 * 2 1 3 14 14 H 1.08995 * 109.50155 * 185.06690 * 13 2 1 15 15 C 1.53037 * 109.50035 * 64.99673 * 13 2 1 16 16 C 1.53039 * 109.53888 * 178.68521 * 15 13 2 17 17 C 1.53185 * 109.31486 * 61.36692 * 16 15 13 18 18 N 1.46927 * 108.77776 * 305.36683 * 17 16 15 19 19 C 1.34782 * 120.63173 * 233.63393 * 18 17 16 20 20 O 1.21625 * 119.99756 * 171.43716 * 19 18 17 21 21 C 1.47163 * 119.99641 * 351.43491 * 19 18 17 22 22 C 1.38400 * 126.88460 * 332.56020 * 21 19 18 23 23 C 1.39681 * 105.35863 * 179.91784 * 22 21 19 24 24 N 1.30859 * 107.85809 * 0.35177 * 23 22 21 25 25 N 1.28449 * 110.93033 * 359.77554 * 24 23 22 26 26 C 1.46498 * 125.19050 * 180.02562 * 25 24 23 27 27 C 1.53780 * 113.61460 * 31.01051 * 26 25 24 28 28 C 1.53778 * 87.08335 * 220.01583 * 27 26 25 29 29 C 1.53782 * 87.08040 * 25.43434 * 28 27 26 30 30 C 1.46927 * 118.73872 * 53.60132 * 18 17 16 31 31 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46519 * 299.99736 * 1 2 3 33 33 H 1.08999 * 109.46884 * 59.99549 * 1 2 3 34 34 H 0.96999 * 120.00161 * 94.99365 * 4 2 1 35 35 H 0.97004 * 119.99490 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46284 * 298.70815 * 15 13 2 37 37 H 1.09001 * 109.46129 * 58.67830 * 15 13 2 38 38 H 1.09005 * 109.49552 * 181.32035 * 16 15 13 39 39 H 1.09002 * 109.50068 * 301.41099 * 16 15 13 40 40 H 1.08999 * 109.58904 * 65.15219 * 17 16 15 41 41 H 1.08995 * 109.58951 * 185.43500 * 17 16 15 42 42 H 1.07994 * 127.32524 * 0.02562 * 22 21 19 43 43 H 1.07991 * 126.07163 * 180.11029 * 23 22 21 44 44 H 1.09005 * 112.84785 * 162.31494 * 26 25 24 45 45 H 1.08998 * 113.61925 * 334.56578 * 27 26 25 46 46 H 1.09004 * 113.61633 * 105.46817 * 27 26 25 47 47 H 1.08995 * 113.62029 * 270.88815 * 28 27 26 48 48 H 1.08994 * 113.61996 * 139.97695 * 28 27 26 49 49 H 1.09007 * 113.61543 * 220.02296 * 29 28 27 50 50 H 1.08990 * 113.61787 * 89.11423 * 29 28 27 51 51 H 1.08994 * 109.58740 * 186.60502 * 30 18 17 52 52 H 1.09003 * 109.58225 * 66.18498 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6621 3.5092 8 7 2.7377 -0.0055 4.6428 9 14 3.0545 -2.4749 3.4255 10 1 4.4872 -2.6181 3.0616 11 1 2.8146 -3.1048 4.7487 12 1 2.2141 -3.1430 2.3996 13 6 2.0400 -0.7212 -1.2493 14 1 3.1262 -0.8007 -1.2056 15 6 1.6354 0.0687 -2.4961 16 6 2.1732 -0.6345 -3.7444 17 6 1.5611 -2.0355 -3.8400 18 7 1.8218 -2.7522 -2.5842 19 6 2.4130 -3.9634 -2.5947 20 8 2.7647 -4.4775 -1.5501 21 6 2.6330 -4.6637 -3.8702 22 6 1.8877 -4.5327 -5.0291 23 6 2.4856 -5.3933 -5.9527 24 7 3.4947 -5.9792 -5.3604 25 7 3.6100 -5.5776 -4.1458 26 6 4.6335 -6.0304 -3.2004 27 6 5.9650 -6.4104 -3.8694 28 6 6.0321 -7.5904 -2.8856 29 6 4.4983 -7.5113 -2.8085 30 6 1.4264 -2.1232 -1.3166 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1525 35 1 3.0604 -0.4630 5.4350 36 1 0.5484 0.1272 -2.5521 37 1 2.0506 1.0749 -2.4391 38 1 1.9047 -0.0589 -4.6303 39 1 3.2581 -0.7153 -3.6776 40 1 0.4856 -1.9544 -3.9979 41 1 2.0128 -2.5757 -4.6720 42 1 1.0278 -3.8986 -5.1864 43 1 2.1687 -5.5504 -6.9730 44 1 4.7472 -5.3615 -2.3473 45 1 5.8593 -6.7154 -4.9105 46 1 6.7541 -5.6732 -3.7214 47 1 6.5295 -7.3483 -1.9465 48 1 6.3995 -8.5131 -3.3347 49 1 4.1032 -7.6627 -1.8039 50 1 3.9914 -8.1171 -3.5595 51 1 1.7910 -2.7222 -0.4822 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732526543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:31 Heat of formation + Delta-G solvation = 86.107990 kcal Electronic energy + Delta-G solvation = -31886.479230 eV Core-core repulsion = 27889.085034 eV Total energy + Delta-G solvation = -3997.394195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.86053 -40.15894 -38.77123 -37.95663 -35.71264 -33.21428 -32.03502 -31.97534 -31.31077 -30.02783 -28.12503 -26.23453 -26.06349 -25.51305 -24.58065 -23.12578 -22.66249 -22.01292 -20.99186 -20.25624 -19.18253 -18.90690 -17.86547 -17.39437 -16.74798 -16.21220 -15.88734 -15.69404 -15.06798 -14.91487 -14.77062 -14.53264 -14.22434 -14.06566 -13.86768 -13.38058 -13.19494 -13.08312 -13.01759 -12.88661 -12.68295 -12.60944 -12.56791 -12.18802 -11.67286 -11.58011 -11.40538 -11.21077 -11.04132 -10.96294 -10.92637 -10.75181 -10.68183 -10.55237 -10.40569 -10.18027 -10.06750 -9.89534 -9.53511 -9.36742 -9.12343 -8.91412 -8.62316 -7.25105 -5.74530 -3.09820 1.13264 2.10525 2.39556 2.89278 2.99397 3.42998 3.48832 3.51345 3.97866 4.14756 4.18205 4.40691 4.44880 4.62379 4.63235 4.66780 4.82798 4.86532 4.92287 5.06312 5.17746 5.22286 5.24789 5.33348 5.38200 5.40972 5.44594 5.49219 5.53064 5.54841 5.58836 5.59241 5.62656 5.72617 5.74197 5.78516 5.96085 5.97782 5.99896 6.13833 6.22160 6.24389 6.28047 6.40824 6.46297 6.55556 6.59032 6.77872 7.02626 7.23324 7.84735 7.99444 8.01661 8.44598 9.23367 9.96437 10.15568 11.43738 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.003589 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.031064 B = 7800.179343 C = 9879.212366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.186 3.814 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.108 4.108 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.089 3.911 18 N -0.593 5.593 19 C 0.584 3.416 20 O -0.533 6.533 21 C -0.027 4.027 22 C -0.200 4.200 23 C -0.006 4.006 24 N -0.278 5.278 25 N -0.245 5.245 26 C 0.117 3.883 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.139 4.139 30 C 0.115 3.885 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.164 0.836 43 H 0.186 0.814 44 H 0.138 0.862 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 -9.767 -25.471 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.033 4.033 18 N -0.326 5.326 19 C 0.371 3.629 20 O -0.410 6.410 21 C -0.156 4.156 22 C -0.228 4.228 23 C -0.181 4.181 24 N -0.110 5.110 25 N -0.032 5.032 26 C 0.017 3.983 27 C -0.176 4.176 28 C -0.175 4.175 29 C -0.177 4.177 30 C -0.006 4.006 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.182 0.818 43 H 0.203 0.797 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.112 0.888 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.153 -10.679 -24.772 27.000 hybrid contribution -0.496 -0.621 0.222 0.825 sum 0.658 -11.300 -24.549 27.033 Atomic orbital electron populations 1.22551 0.99002 1.00888 1.00595 1.20151 0.92012 0.95604 0.84650 0.92291 1.42868 1.79794 1.09458 1.07197 1.19059 1.36898 0.95488 0.85724 0.89179 1.24640 1.01403 0.97354 0.95572 1.69700 1.52743 1.35542 1.00263 0.86628 0.78695 0.86870 0.76844 1.21126 1.21761 1.20089 1.21837 1.01084 0.94054 0.95785 0.90636 1.21608 1.01263 0.99065 0.93274 1.21926 1.01068 0.95254 0.98951 1.22301 1.00984 0.93493 0.86540 1.47851 1.59333 1.16700 1.08672 1.17030 0.78173 0.81196 0.86541 1.90845 1.50565 1.66518 1.33083 1.21506 0.96824 1.00093 0.97213 1.22372 1.03599 1.05053 0.91797 1.23569 0.95011 0.98542 1.01009 1.73071 1.21641 1.22990 0.93286 1.45809 1.21662 1.27478 1.08249 1.23612 0.85936 0.97691 0.91085 1.23326 0.94911 0.98583 1.00816 1.22709 0.95792 0.98987 1.00022 1.23331 0.97408 0.93801 1.03199 1.21952 0.99786 0.94003 0.84868 0.93382 0.92322 0.93899 0.80543 0.93111 0.91256 0.91295 0.90621 0.91638 0.90994 0.88234 0.81841 0.79750 0.84439 0.87999 0.90366 0.89260 0.90123 0.89905 0.89059 0.88756 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.77 37.16 0.33 -2.48 16 2 C 0.19 3.40 2.67 -67.93 -0.18 3.22 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -17.66 4.86 -53.42 -0.26 -17.92 16 5 C -0.24 -6.82 10.41 -15.06 -0.16 -6.97 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.66 13.97 55.49 0.78 -28.88 16 9 Si 0.88 23.02 27.73 -169.99 -4.71 18.30 16 10 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.27 -6.95 6.52 56.52 0.37 -6.58 16 13 C -0.11 -1.61 2.27 -90.50 -0.21 -1.82 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.11 -1.27 4.89 -26.69 -0.13 -1.40 16 16 C -0.13 -1.23 6.08 -26.62 -0.16 -1.39 16 17 C 0.09 0.83 5.17 -3.71 -0.02 0.81 16 18 N -0.59 -7.79 2.97 -174.14 -0.52 -8.31 16 19 C 0.58 8.79 7.46 -12.64 -0.09 8.69 16 20 O -0.53 -9.90 14.73 5.26 0.08 -9.82 16 21 C -0.03 -0.35 6.40 -82.06 -0.52 -0.88 16 22 C -0.20 -1.96 8.60 -38.98 -0.34 -2.29 16 23 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 24 N -0.28 -3.24 11.04 30.59 0.34 -2.90 16 25 N -0.24 -3.06 3.48 -49.91 -0.17 -3.24 16 26 C 0.12 1.36 4.18 -67.12 -0.28 1.08 16 27 C -0.14 -1.25 7.69 -25.92 -0.20 -1.45 16 28 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 29 C -0.14 -1.41 7.88 -25.92 -0.20 -1.61 16 30 C 0.12 1.75 5.19 -3.71 -0.02 1.73 16 31 H 0.05 0.78 6.23 -51.93 -0.32 0.45 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.57 6.60 -51.93 -0.34 0.22 16 34 H 0.36 8.64 4.34 -40.82 -0.18 8.46 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.07 0.71 6.63 -51.93 -0.34 0.36 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.83 4.32 -51.93 -0.22 0.60 16 42 H 0.16 1.17 6.49 -52.49 -0.34 0.83 16 43 H 0.19 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.14 1.81 6.68 -51.93 -0.35 1.46 16 45 H 0.10 0.95 7.54 -51.93 -0.39 0.56 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 51 H 0.09 1.76 5.82 -51.93 -0.30 1.46 16 52 H 0.08 1.11 6.06 -51.93 -0.31 0.79 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -34.30 395.57 -9.41 -43.71 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.19 Total: 9.36 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.70 Total: -6.26 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.16 Total: -61.25 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.30 -9.41 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.815 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds