Wall clock time and date at job start Wed Apr 1 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47252 * 2 1 4 4 N 1.46501 * 109.47518 * 120.00481 * 2 1 3 5 5 C 1.36936 * 119.99659 * 275.00127 * 4 2 1 6 6 H 1.08002 * 120.00313 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00043 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00066 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99791 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47130 * 89.99895 * 9 7 5 11 11 H 1.48499 * 109.47394 * 210.00007 * 9 7 5 12 12 H 1.48496 * 109.47127 * 330.00253 * 9 7 5 13 13 C 1.53002 * 109.46963 * 240.00432 * 2 1 3 14 14 H 1.08995 * 109.50155 * 185.06690 * 13 2 1 15 15 C 1.53037 * 109.50035 * 64.99673 * 13 2 1 16 16 C 1.53039 * 109.53888 * 178.68521 * 15 13 2 17 17 C 1.53185 * 109.31486 * 61.36692 * 16 15 13 18 18 N 1.46927 * 108.77776 * 305.36683 * 17 16 15 19 19 C 1.34782 * 120.63173 * 233.63393 * 18 17 16 20 20 O 1.21625 * 119.99756 * 171.43716 * 19 18 17 21 21 C 1.47163 * 119.99641 * 351.43491 * 19 18 17 22 22 C 1.38400 * 126.88460 * 332.56020 * 21 19 18 23 23 C 1.39681 * 105.35863 * 179.91784 * 22 21 19 24 24 N 1.30859 * 107.85809 * 0.35177 * 23 22 21 25 25 N 1.28449 * 110.93033 * 359.77554 * 24 23 22 26 26 C 1.46498 * 125.19050 * 180.02562 * 25 24 23 27 27 C 1.53780 * 113.61460 * 31.01051 * 26 25 24 28 28 C 1.53778 * 87.08335 * 220.01583 * 27 26 25 29 29 C 1.53782 * 87.08040 * 25.43434 * 28 27 26 30 30 C 1.46927 * 118.73872 * 53.60132 * 18 17 16 31 31 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46519 * 299.99736 * 1 2 3 33 33 H 1.08999 * 109.46884 * 59.99549 * 1 2 3 34 34 H 0.96999 * 120.00161 * 94.99365 * 4 2 1 35 35 H 0.97004 * 119.99490 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46284 * 298.70815 * 15 13 2 37 37 H 1.09001 * 109.46129 * 58.67830 * 15 13 2 38 38 H 1.09005 * 109.49552 * 181.32035 * 16 15 13 39 39 H 1.09002 * 109.50068 * 301.41099 * 16 15 13 40 40 H 1.08999 * 109.58904 * 65.15219 * 17 16 15 41 41 H 1.08995 * 109.58951 * 185.43500 * 17 16 15 42 42 H 1.07994 * 127.32524 * 0.02562 * 22 21 19 43 43 H 1.07991 * 126.07163 * 180.11029 * 23 22 21 44 44 H 1.09005 * 112.84785 * 162.31494 * 26 25 24 45 45 H 1.08998 * 113.61925 * 334.56578 * 27 26 25 46 46 H 1.09004 * 113.61633 * 105.46817 * 27 26 25 47 47 H 1.08995 * 113.62029 * 270.88815 * 28 27 26 48 48 H 1.08994 * 113.61996 * 139.97695 * 28 27 26 49 49 H 1.09007 * 113.61543 * 220.02296 * 29 28 27 50 50 H 1.08990 * 113.61787 * 89.11423 * 29 28 27 51 51 H 1.08994 * 109.58740 * 186.60502 * 30 18 17 52 52 H 1.09003 * 109.58225 * 66.18498 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6621 3.5092 8 7 2.7377 -0.0055 4.6428 9 14 3.0545 -2.4749 3.4255 10 1 4.4872 -2.6181 3.0616 11 1 2.8146 -3.1048 4.7487 12 1 2.2141 -3.1430 2.3996 13 6 2.0400 -0.7212 -1.2493 14 1 3.1262 -0.8007 -1.2056 15 6 1.6354 0.0687 -2.4961 16 6 2.1732 -0.6345 -3.7444 17 6 1.5611 -2.0355 -3.8400 18 7 1.8218 -2.7522 -2.5842 19 6 2.4130 -3.9634 -2.5947 20 8 2.7647 -4.4775 -1.5501 21 6 2.6330 -4.6637 -3.8702 22 6 1.8877 -4.5327 -5.0291 23 6 2.4856 -5.3933 -5.9527 24 7 3.4947 -5.9792 -5.3604 25 7 3.6100 -5.5776 -4.1458 26 6 4.6335 -6.0304 -3.2004 27 6 5.9650 -6.4104 -3.8694 28 6 6.0321 -7.5904 -2.8856 29 6 4.4983 -7.5113 -2.8085 30 6 1.4264 -2.1232 -1.3166 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1525 35 1 3.0604 -0.4630 5.4350 36 1 0.5484 0.1272 -2.5521 37 1 2.0506 1.0749 -2.4391 38 1 1.9047 -0.0589 -4.6303 39 1 3.2581 -0.7153 -3.6776 40 1 0.4856 -1.9544 -3.9979 41 1 2.0128 -2.5757 -4.6720 42 1 1.0278 -3.8986 -5.1864 43 1 2.1687 -5.5504 -6.9730 44 1 4.7472 -5.3615 -2.3473 45 1 5.8593 -6.7154 -4.9105 46 1 6.7541 -5.6732 -3.7214 47 1 6.5295 -7.3483 -1.9465 48 1 6.3995 -8.5131 -3.3347 49 1 4.1032 -7.6627 -1.8039 50 1 3.9914 -8.1171 -3.5595 51 1 1.7910 -2.7222 -0.4822 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732526543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:29 Heat of formation + Delta-G solvation = 64.234003 kcal Electronic energy + Delta-G solvation = -31887.427757 eV Core-core repulsion = 27889.085034 eV Total energy + Delta-G solvation = -3998.342723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.68702 -41.23990 -39.53988 -39.20554 -37.14095 -34.82417 -33.44044 -32.80206 -32.40448 -31.55186 -29.48603 -27.17235 -26.82952 -26.34942 -26.17052 -24.56108 -23.68920 -22.82362 -22.16942 -21.23793 -20.39068 -19.89465 -19.61539 -18.54244 -17.79730 -17.13961 -16.93817 -16.66636 -16.51165 -16.07352 -16.02200 -15.74778 -15.41786 -15.09967 -14.97381 -14.68830 -14.39960 -14.24083 -14.13906 -13.99081 -13.91763 -13.66044 -13.56675 -13.34005 -13.11716 -12.99393 -12.69740 -12.40229 -12.29614 -12.11567 -11.93588 -11.89953 -11.84438 -11.77996 -11.71202 -11.54695 -11.38625 -11.29023 -11.12339 -11.01687 -10.25613 -9.92190 -9.67105 -9.33795 -8.06583 -5.36998 0.21330 1.23196 1.30092 1.32797 1.38442 1.63388 1.92765 2.00324 2.41483 3.21474 3.25567 3.26603 3.38233 3.51475 3.61940 3.68204 3.79911 3.86793 3.92587 3.97945 4.09421 4.14175 4.27158 4.34485 4.41778 4.51538 4.56706 4.58927 4.61298 4.65989 4.67938 4.78661 4.79438 4.81584 4.83463 4.87722 4.89418 4.91398 5.04639 5.08322 5.13625 5.22228 5.25607 5.34130 5.41066 5.47597 5.57616 5.66064 5.74454 5.76348 6.19344 6.21348 6.87632 7.05157 7.09424 7.83784 7.99568 9.15347 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.003589 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.031064 B = 7800.179343 C = 9879.212366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 H 0.050 0.950 4 N -0.757 5.757 5 C -0.219 4.219 6 H 0.065 0.935 7 C -0.057 4.057 8 N -0.981 5.981 9 Si 0.940 3.060 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.266 1.266 13 C -0.096 4.096 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.083 3.917 18 N -0.588 5.588 19 C 0.577 3.423 20 O -0.585 6.585 21 C -0.059 4.059 22 C -0.178 4.178 23 C -0.001 4.001 24 N -0.292 5.292 25 N -0.257 5.257 26 C 0.103 3.897 27 C -0.128 4.128 28 C -0.125 4.125 29 C -0.138 4.138 30 C 0.120 3.880 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.196 0.804 43 H 0.223 0.777 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.051 0.949 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -10.268 -30.025 31.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.068 0.932 4 N -0.400 5.400 5 C -0.350 4.350 6 H 0.083 0.917 7 C -0.249 4.249 8 N -0.632 5.632 9 Si 0.769 3.231 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.191 1.191 13 C -0.116 4.116 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.037 4.037 18 N -0.319 5.319 19 C 0.365 3.635 20 O -0.465 6.465 21 C -0.187 4.187 22 C -0.207 4.207 23 C -0.177 4.177 24 N -0.124 5.124 25 N -0.044 5.044 26 C 0.002 3.998 27 C -0.166 4.166 28 C -0.162 4.162 29 C -0.177 4.177 30 C -0.002 4.002 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.213 0.787 43 H 0.240 0.760 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.070 0.930 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.167 -11.153 -29.414 31.458 hybrid contribution -0.151 -0.356 1.524 1.572 sum -0.318 -11.510 -27.890 30.173 Atomic orbital electron populations 1.22397 0.96752 1.01366 1.01412 1.20463 0.93504 0.95053 0.84138 0.93185 1.43001 1.80089 1.09432 1.07508 1.19082 1.34192 0.94553 0.87207 0.91678 1.25279 1.02889 1.01173 0.95531 1.69840 1.55157 1.37184 1.01038 0.85648 0.78288 0.82449 0.76745 1.21263 1.21828 1.19122 1.21664 0.99297 0.94429 0.96189 0.93295 1.21612 1.02637 0.98650 0.91766 1.21922 0.99990 0.95396 0.99264 1.22672 1.03108 0.93076 0.84842 1.47918 1.58437 1.16259 1.09325 1.17460 0.77604 0.81606 0.86862 1.90811 1.52779 1.67907 1.35034 1.21460 0.98567 1.01439 0.97215 1.22777 1.03316 1.04419 0.90160 1.24272 0.93797 0.97292 1.02326 1.73071 1.22784 1.23549 0.93023 1.45882 1.21977 1.27906 1.08629 1.23624 0.87433 0.97661 0.91048 1.23273 0.93550 0.98907 1.00820 1.22695 0.94050 0.99434 1.00052 1.23310 0.99061 0.93053 1.02264 1.21735 1.00350 0.93247 0.84892 0.93029 0.94988 0.89570 0.80761 0.93405 0.89140 0.90856 0.86866 0.93304 0.87828 0.86865 0.78684 0.76012 0.87081 0.87856 0.89881 0.88930 0.88198 0.91300 0.89128 0.93010 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 8.77 71.98 0.63 -4.36 16 2 C 0.18 6.40 2.67 44.99 0.12 6.52 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.76 -36.43 4.86 -322.93 -1.57 -38.00 16 5 C -0.22 -12.74 10.41 84.03 0.87 -11.87 16 6 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 7 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 8 N -0.98 -64.44 13.97 21.65 0.30 -64.13 16 9 Si 0.94 49.42 27.73 68.60 1.90 51.33 16 10 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 11 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 12 H -0.27 -13.40 6.52 99.48 0.65 -12.75 16 13 C -0.10 -2.78 2.27 -10.72 -0.02 -2.80 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 15 C -0.11 -2.04 4.89 30.62 0.15 -1.89 16 16 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 17 C 0.08 1.20 5.17 86.36 0.45 1.65 16 18 N -0.59 -14.60 2.97 -823.09 -2.45 -17.04 16 19 C 0.58 17.42 7.46 86.59 0.65 18.07 16 20 O -0.58 -22.97 14.73 -4.11 -0.06 -23.03 16 21 C -0.06 -1.44 6.40 40.79 0.26 -1.18 16 22 C -0.18 -2.86 8.60 22.66 0.19 -2.66 16 23 C 0.00 -0.02 12.03 85.19 1.03 1.00 16 24 N -0.29 -6.24 11.04 -57.14 -0.63 -6.87 16 25 N -0.26 -6.29 3.48 -311.81 -1.09 -7.38 16 26 C 0.10 2.47 4.18 45.52 0.19 2.66 16 27 C -0.13 -2.26 7.69 31.12 0.24 -2.02 16 28 C -0.12 -1.93 8.08 31.12 0.25 -1.67 16 29 C -0.14 -2.87 7.88 31.12 0.25 -2.63 16 30 C 0.12 3.56 5.19 86.36 0.45 4.00 16 31 H 0.05 1.57 6.23 -2.39 -0.01 1.56 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.94 6.60 -2.39 -0.02 1.93 16 34 H 0.36 17.62 4.34 -92.71 -0.40 17.22 16 35 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 36 H 0.09 1.36 6.63 -2.39 -0.02 1.34 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.11 1.37 4.32 -2.39 -0.01 1.36 16 42 H 0.20 1.72 6.49 -2.91 -0.02 1.71 16 43 H 0.22 1.50 8.06 -2.92 -0.02 1.47 16 44 H 0.11 3.21 6.68 -2.38 -0.02 3.20 16 45 H 0.10 1.81 7.54 -2.39 -0.02 1.79 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 50 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.05 2.00 5.82 -2.39 -0.01 1.98 16 52 H 0.09 2.47 6.06 -2.39 -0.01 2.46 16 Total: -1.00 -80.45 395.57 3.24 -77.22 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.47 Total: 29.77 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.35 Total: -1.85 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -5.43 Total: -133.43 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 1.90 Total: 51.33 kcal Total: -80.45 3.24 -77.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732526543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.450 kcal (2) G-P(sol) polarization free energy of solvation -80.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds