Wall clock time and date at job start Wed Apr 1 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 N 1.46500 * 109.47755 * 120.00047 * 2 1 3 5 5 C 1.36938 * 119.99617 * 275.00460 * 4 2 1 6 6 H 1.07992 * 120.00524 * 359.97438 * 5 4 2 7 7 C 1.38821 * 119.99582 * 179.97438 * 5 4 2 8 8 N 1.31613 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46857 * 120.00129 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00096 * 9 7 5 13 13 C 1.52997 * 109.47225 * 240.00265 * 2 1 3 14 14 H 1.08993 * 109.52505 * 299.91345 * 13 2 1 15 15 C 1.53045 * 109.49672 * 59.99647 * 13 2 1 16 16 C 1.53043 * 109.52405 * 181.30972 * 15 13 2 17 17 C 1.53190 * 109.31495 * 298.64288 * 16 15 13 18 18 N 1.46921 * 108.77643 * 54.63484 * 17 16 15 19 19 C 1.34777 * 120.63083 * 126.41466 * 18 17 16 20 20 O 1.21567 * 120.00226 * 173.99074 * 19 18 17 21 21 C 1.47711 * 120.00014 * 353.99751 * 19 18 17 22 22 C 1.41635 * 126.49846 * 173.23408 * 21 19 18 23 23 C 1.34706 * 105.33757 * 179.83632 * 22 21 19 24 24 N 1.35497 * 107.70751 * 0.45423 * 23 22 21 25 25 N 1.28421 * 109.72809 * 359.66469 * 24 23 22 26 26 C 1.46998 * 123.90470 * 179.60797 * 24 23 22 27 27 C 1.53147 * 108.88042 * 342.33745 * 26 24 23 28 28 C 1.53154 * 109.59573 * 51.13582 * 27 26 24 29 29 C 1.50795 * 127.54350 * 180.17412 * 23 22 21 30 30 C 1.46920 * 118.74061 * 306.39141 * 18 17 16 31 31 H 1.08999 * 109.46688 * 299.99319 * 1 2 3 32 32 H 1.08993 * 109.47306 * 60.00247 * 1 2 3 33 33 H 1.09007 * 109.46721 * 179.97438 * 1 2 3 34 34 H 0.96991 * 120.00117 * 94.99587 * 4 2 1 35 35 H 0.97000 * 119.99841 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.46130 * 61.30213 * 15 13 2 37 37 H 1.08995 * 109.45702 * 301.32015 * 15 13 2 38 38 H 1.08996 * 109.49730 * 58.59248 * 16 15 13 39 39 H 1.09002 * 109.49632 * 178.69224 * 16 15 13 40 40 H 1.09001 * 109.59013 * 174.42835 * 17 16 15 41 41 H 1.09002 * 109.58237 * 294.84851 * 17 16 15 42 42 H 1.08002 * 127.33447 * 359.97438 * 22 21 19 43 43 H 1.09002 * 109.57020 * 102.15865 * 26 24 23 44 44 H 1.09004 * 109.57032 * 222.52001 * 26 24 23 45 45 H 1.09003 * 109.44615 * 171.17213 * 27 26 24 46 46 H 1.08999 * 109.45302 * 291.11981 * 27 26 24 47 47 H 1.09007 * 109.54211 * 50.27195 * 28 27 26 48 48 H 1.09003 * 109.54523 * 170.44057 * 28 27 26 49 49 H 1.09008 * 109.71503 * 45.15358 * 29 23 22 50 50 H 1.08998 * 109.71862 * 284.51588 * 29 23 22 51 51 H 1.08998 * 109.59127 * 173.39656 * 30 18 17 52 52 H 1.09000 * 109.59092 * 293.82588 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6116 -0.6619 3.5092 8 7 2.9248 -1.9389 3.4500 9 14 2.7907 0.2701 5.1181 10 1 2.3765 1.6825 4.9208 11 1 1.9296 -0.3578 6.1524 12 1 4.2075 0.2265 5.5605 13 6 2.0400 -0.7212 -1.2492 14 1 1.6785 -1.7494 -1.2494 15 6 1.5301 -0.0002 -2.4992 16 6 2.0129 -0.7399 -3.7490 17 6 3.5444 -0.7368 -3.7797 18 7 4.0438 -1.2969 -2.5165 19 6 4.9188 -2.3220 -2.5182 20 8 5.4084 -2.7050 -1.4735 21 6 5.2831 -2.9800 -3.7896 22 6 6.2787 -3.9710 -3.9702 23 6 6.2495 -4.2703 -5.2832 24 7 5.2989 -3.4968 -5.8612 25 7 4.7467 -2.7520 -4.9725 26 6 4.9748 -3.5296 -7.2946 27 6 6.1280 -4.1987 -8.0482 28 6 6.4662 -5.5376 -7.3859 29 6 7.1057 -5.2717 -6.0168 30 6 3.5717 -0.7178 -1.2515 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2492 -1.6317 1.1526 35 1 3.2482 -2.3961 4.2420 36 1 1.9124 1.0205 -2.5111 37 1 0.4404 0.0202 -2.4875 38 1 1.6515 -1.7679 -3.7256 39 1 1.6302 -0.2393 -4.6385 40 1 3.8945 -1.3459 -4.6132 41 1 3.9055 0.2852 -3.8944 42 1 6.9227 -4.3977 -3.2154 43 1 4.0585 -4.0996 -7.4488 44 1 4.8402 -2.5122 -7.6620 45 1 5.8339 -4.3700 -9.0837 46 1 7.0035 -3.5499 -8.0221 47 1 5.5543 -6.1204 -7.2554 48 1 7.1646 -6.0895 -8.0150 49 1 7.1553 -6.2000 -5.4475 50 1 8.1093 -4.8684 -6.1517 51 1 3.9396 -1.3143 -0.4167 52 1 3.9350 0.3058 -1.1600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:17 Heat of formation + Delta-G solvation = 54.990991 kcal Electronic energy + Delta-G solvation = -31294.301252 eV Core-core repulsion = 27295.557722 eV Total energy + Delta-G solvation = -3998.743530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.97962 -39.73329 -37.61941 -36.92989 -35.28218 -33.35229 -32.85063 -31.59336 -30.88167 -29.51746 -28.96938 -28.09386 -25.63371 -24.88346 -23.95793 -22.95887 -22.74232 -22.13127 -20.82910 -19.88237 -19.41940 -18.53785 -17.23572 -17.09842 -16.74544 -16.11097 -15.59768 -15.14121 -14.76981 -14.75221 -14.56993 -14.37871 -14.21142 -14.08821 -13.70869 -13.59202 -13.45498 -13.05873 -12.84466 -12.81532 -12.53760 -12.28492 -12.19715 -11.94910 -11.69439 -11.60675 -11.51085 -11.30168 -11.11908 -10.90143 -10.77735 -10.62304 -10.59202 -10.13889 -10.07626 -9.98494 -9.80620 -9.52560 -9.40900 -9.16064 -9.05636 -8.79886 -8.22067 -6.82163 -5.62523 -2.91422 1.54325 2.05684 2.16877 3.30631 3.51992 3.56798 3.59616 3.61437 3.85410 4.07537 4.15941 4.26167 4.54276 4.67956 4.68987 4.81970 4.87314 5.04009 5.08553 5.13484 5.17486 5.19372 5.28261 5.30595 5.40747 5.44699 5.56927 5.59452 5.59692 5.69993 5.74477 5.87146 5.90902 5.94111 6.01435 6.10954 6.15674 6.28774 6.33408 6.36308 6.40957 6.54854 6.61302 6.63324 6.71942 6.85076 7.00818 7.04048 7.21171 7.69055 7.82487 7.89771 8.50558 8.55107 9.66141 10.24817 10.59370 11.59865 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.002515 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.314737 B =11128.607037 C =12380.375840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.075 3.925 18 N -0.598 5.598 19 C 0.595 3.405 20 O -0.523 6.523 21 C 0.000 4.000 22 C -0.175 4.175 23 C 0.014 3.986 24 N -0.288 5.288 25 N -0.262 5.262 26 C 0.120 3.880 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.052 4.052 30 C 0.124 3.876 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.132 0.868 41 H 0.057 0.943 42 H 0.162 0.838 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.106 0.894 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -4.647 -30.482 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.049 4.049 18 N -0.330 5.330 19 C 0.380 3.620 20 O -0.397 6.397 21 C -0.160 4.160 22 C -0.203 4.203 23 C -0.110 4.110 24 N -0.076 5.076 25 N -0.096 5.096 26 C 0.001 3.999 27 C -0.174 4.174 28 C -0.165 4.165 29 C -0.090 4.090 30 C 0.002 3.998 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.075 0.925 42 H 0.180 0.820 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.124 0.876 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.807 -4.078 -30.433 31.079 hybrid contribution 0.501 -0.174 1.325 1.427 sum 5.308 -4.253 -29.108 29.892 Atomic orbital electron populations 1.22474 0.99376 1.00749 0.99800 1.20176 0.91767 0.95256 0.85832 0.93547 1.42462 1.78031 1.10772 1.05290 1.19240 1.36417 0.93759 0.87317 0.91265 1.24736 1.02347 0.95941 0.97955 1.69680 1.50805 1.08601 1.28616 0.86174 0.77262 0.78738 0.84361 1.20676 1.22060 1.21949 1.21747 0.94731 1.00428 0.95279 0.91290 1.21647 1.00775 0.99032 0.93879 1.21841 0.95455 1.01081 0.98180 1.22614 0.94486 0.99807 0.87979 1.47985 1.43589 1.33164 1.08256 1.17031 0.79318 0.79536 0.86094 1.90856 1.53095 1.64197 1.31511 1.22106 1.00073 1.01890 0.91897 1.21336 1.02564 1.01309 0.95084 1.21237 0.96777 0.99602 0.93414 1.45920 1.26164 1.27412 1.08129 1.73053 1.21990 1.16390 0.98148 1.22124 0.99700 1.03797 0.74313 1.21936 0.98148 0.97445 0.99907 1.21693 1.01939 0.96851 0.96026 1.20345 0.97236 0.96744 0.94722 1.21716 0.93777 0.98986 0.85285 0.92938 0.94310 0.93657 0.78184 0.93632 0.92042 0.91458 0.91920 0.91480 0.85108 0.92475 0.81998 0.88988 0.88213 0.88787 0.90371 0.91039 0.90085 0.88976 0.89502 0.87558 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.14 37.16 0.34 -2.72 16 2 C 0.18 3.69 2.47 -67.93 -0.17 3.52 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 N -0.72 -18.77 4.52 -53.42 -0.24 -19.01 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.37 13.06 55.49 0.72 -28.65 16 9 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 13 C -0.10 -1.81 1.97 -90.51 -0.18 -1.98 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.12 -1.61 4.85 -26.69 -0.13 -1.74 16 16 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 17 C 0.07 1.01 6.33 -3.71 -0.02 0.99 16 18 N -0.60 -10.27 2.97 -173.95 -0.52 -10.79 16 19 C 0.59 11.19 7.69 -12.39 -0.10 11.09 16 20 O -0.52 -11.90 16.37 5.31 0.09 -11.81 16 21 C 0.00 0.01 6.88 -82.68 -0.57 -0.56 16 22 C -0.18 -2.34 10.76 -39.54 -0.43 -2.76 16 23 C 0.01 0.14 6.57 -82.18 -0.54 -0.40 16 24 N -0.29 -2.88 3.74 -56.71 -0.21 -3.09 16 25 N -0.26 -3.39 8.42 33.46 0.28 -3.11 16 26 C 0.12 0.65 7.17 -3.69 -0.03 0.62 16 27 C -0.14 -0.43 5.91 -26.58 -0.16 -0.59 16 28 C -0.13 -0.48 5.98 -26.43 -0.16 -0.63 16 29 C -0.05 -0.30 6.28 -27.61 -0.17 -0.48 16 30 C 0.12 2.38 5.45 -3.73 -0.02 2.36 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.60 6.40 -51.93 -0.33 0.26 16 33 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.38 10.84 7.62 -40.82 -0.31 10.53 16 35 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.13 1.71 3.75 -109.51 -0.41 1.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 46 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 47 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 48 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 49 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 50 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.11 2.50 6.56 -51.93 -0.34 2.16 16 52 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -35.84 402.11 -10.45 -46.28 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.87 Total: 8.30 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.73 Total: -2.43 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.04 Total: -64.65 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.84 -10.45 -46.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.275 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds