Wall clock time and date at job start Wed Apr 1 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47026 * 2 1 4 4 N 1.46499 * 109.47589 * 119.99614 * 2 1 3 5 5 C 1.36936 * 120.00077 * 275.00640 * 4 2 1 6 6 H 1.08001 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00479 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00096 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46886 * 89.99635 * 9 7 5 11 11 H 1.48493 * 109.47365 * 209.99920 * 9 7 5 12 12 H 1.48503 * 109.46818 * 330.00058 * 9 7 5 13 13 C 1.53000 * 109.47443 * 240.00002 * 2 1 3 14 14 H 1.09001 * 109.49725 * 184.92911 * 13 2 1 15 15 C 1.53041 * 109.49502 * 64.83393 * 13 2 1 16 16 C 1.53039 * 109.53952 * 178.68493 * 15 13 2 17 17 C 1.53189 * 109.30964 * 61.36354 * 16 15 13 18 18 N 1.46932 * 108.78010 * 305.36602 * 17 16 15 19 19 C 1.34774 * 120.63183 * 233.63089 * 18 17 16 20 20 O 1.21572 * 119.99567 * 172.99310 * 19 18 17 21 21 C 1.47714 * 120.00022 * 353.00336 * 19 18 17 22 22 C 1.41642 * 126.49544 * 172.92069 * 21 19 18 23 23 C 1.34704 * 105.33460 * 179.82295 * 22 21 19 24 24 N 1.35507 * 107.70947 * 0.44772 * 23 22 21 25 25 N 1.28418 * 109.72273 * 359.67802 * 24 23 22 26 26 C 1.46992 * 123.89851 * 179.68123 * 24 23 22 27 27 C 1.53178 * 108.87570 * 342.26424 * 26 24 23 28 28 C 1.53152 * 109.57369 * 51.17464 * 27 26 24 29 29 C 1.50798 * 127.53519 * 180.15136 * 23 22 21 30 30 C 1.46923 * 118.73419 * 53.60881 * 18 17 16 31 31 H 1.09004 * 109.47177 * 299.99511 * 1 2 3 32 32 H 1.08995 * 109.47315 * 60.00056 * 1 2 3 33 33 H 1.09006 * 109.46457 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00083 * 94.99619 * 4 2 1 35 35 H 0.96997 * 120.00407 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.46428 * 298.70692 * 15 13 2 37 37 H 1.09000 * 109.46173 * 58.66429 * 15 13 2 38 38 H 1.09000 * 109.49648 * 301.41932 * 16 15 13 39 39 H 1.08992 * 109.52742 * 181.33283 * 16 15 13 40 40 H 1.09001 * 109.58692 * 185.57985 * 17 16 15 41 41 H 1.08999 * 109.70351 * 65.22930 * 17 16 15 42 42 H 1.08001 * 127.33035 * 359.93668 * 22 21 19 43 43 H 1.09006 * 109.56777 * 102.18667 * 26 24 23 44 44 H 1.09003 * 109.56841 * 222.53901 * 26 24 23 45 45 H 1.09001 * 109.49007 * 291.12720 * 27 26 24 46 46 H 1.09004 * 109.41501 * 171.17315 * 27 26 24 47 47 H 1.09002 * 109.54256 * 170.50624 * 28 27 26 48 48 H 1.08996 * 109.61377 * 50.28875 * 28 27 26 49 49 H 1.08999 * 109.71898 * 284.46522 * 29 23 22 50 50 H 1.08996 * 109.71611 * 45.11803 * 29 23 22 51 51 H 1.09002 * 109.58400 * 186.60803 * 30 18 17 52 52 H 1.08994 * 109.58489 * 66.18097 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.1492 -0.0073 2.3757 6 1 1.8926 1.0406 2.4242 7 6 2.6115 -0.6618 3.5092 8 7 2.9237 -1.9391 3.4504 9 14 2.7905 0.2702 5.1182 10 1 1.5227 0.1800 5.8862 11 1 3.8947 -0.3235 5.9140 12 1 3.0963 1.6952 4.8333 13 6 2.0401 -0.7212 -1.2492 14 1 3.1265 -0.7985 -1.2065 15 6 1.6320 0.0665 -2.4962 16 6 2.1698 -0.6366 -3.7446 17 6 1.5609 -2.0392 -3.8379 18 7 1.8250 -2.7541 -2.5817 19 6 2.4190 -3.9638 -2.5919 20 8 2.7475 -4.4884 -1.5455 21 6 2.6710 -4.6521 -3.8743 22 6 3.4041 -5.8501 -4.0576 23 6 3.3633 -6.0937 -5.3818 24 7 2.6557 -5.0948 -5.9630 25 7 2.2606 -4.2650 -5.0662 26 6 2.3980 -5.0057 -7.4074 27 6 3.3884 -5.9125 -8.1444 28 6 3.3621 -7.3124 -7.5238 29 6 3.9846 -7.2509 -6.1227 30 6 1.4297 -2.1248 -1.3143 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0278 0.0005 34 1 2.2491 -1.6317 1.1527 35 1 3.2471 -2.3963 4.2424 36 1 0.5448 0.1224 -2.5509 37 1 2.0447 1.0739 -2.4406 38 1 3.2550 -0.7148 -3.6790 39 1 1.8993 -0.0628 -4.6309 40 1 2.0146 -2.5800 -4.6684 41 1 0.4851 -1.9630 -3.9958 42 1 3.8906 -6.4431 -3.2972 43 1 1.3785 -5.3296 -7.6170 44 1 2.5313 -3.9760 -7.7392 45 1 4.3929 -5.4974 -8.0611 46 1 3.1081 -5.9763 -9.1958 47 1 3.9351 -7.9986 -8.1475 48 1 2.3319 -7.6606 -7.4500 49 1 5.0609 -7.0997 -6.2048 50 1 3.7828 -8.1798 -5.5894 51 1 1.7969 -2.7220 -0.4797 52 1 0.3432 -2.0534 -1.2651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732529780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:35 Heat of formation + Delta-G solvation = 55.750089 kcal Electronic energy + Delta-G solvation = -31267.692446 eV Core-core repulsion = 27268.981833 eV Total energy + Delta-G solvation = -3998.710613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.39 seconds Orbital eigenvalues (eV) -42.98589 -39.81909 -37.69694 -36.93620 -35.28228 -33.36206 -32.85970 -31.73615 -30.80413 -29.51510 -28.97398 -27.73163 -25.86550 -24.78261 -24.22198 -23.01886 -22.93666 -22.23925 -20.96918 -19.98667 -18.93776 -18.41736 -17.22722 -17.10557 -16.78204 -16.14941 -15.66725 -15.07439 -14.83256 -14.70766 -14.62572 -14.52547 -14.24103 -14.04824 -13.71833 -13.66518 -13.46916 -13.13507 -12.89359 -12.77970 -12.52991 -12.34033 -12.32729 -11.80484 -11.71817 -11.63371 -11.51205 -11.40133 -11.29023 -10.89132 -10.78395 -10.53718 -10.32164 -10.26530 -10.12273 -10.06562 -9.85554 -9.59270 -9.41533 -9.16530 -9.04852 -8.79239 -8.22877 -6.82794 -5.62243 -2.91673 1.53343 2.04313 2.16505 3.25319 3.51629 3.56013 3.58389 3.58450 3.84394 4.06792 4.15141 4.24928 4.52368 4.66654 4.68596 4.81197 4.85839 5.01836 5.07363 5.12165 5.14973 5.18328 5.26110 5.29709 5.38860 5.43383 5.55922 5.57529 5.58841 5.69879 5.73570 5.81877 5.88986 5.89854 6.01961 6.05099 6.11234 6.24059 6.27070 6.33944 6.39112 6.50385 6.55473 6.61611 6.72868 6.80648 6.96561 7.02392 7.24072 7.64804 7.81471 7.85742 8.46812 8.55414 9.66055 10.25366 10.59657 11.59901 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.002400 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.685148 B =11663.560229 C =12785.279704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.088 3.912 18 N -0.597 5.597 19 C 0.595 3.405 20 O -0.523 6.523 21 C -0.002 4.002 22 C -0.175 4.175 23 C 0.013 3.987 24 N -0.288 5.288 25 N -0.261 5.261 26 C 0.121 3.879 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.052 4.052 30 C 0.116 3.884 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.162 0.838 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.100 0.900 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -8.367 -30.717 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.035 4.035 18 N -0.330 5.330 19 C 0.381 3.619 20 O -0.397 6.397 21 C -0.162 4.162 22 C -0.203 4.203 23 C -0.111 4.111 24 N -0.077 5.077 25 N -0.096 5.096 26 C 0.001 3.999 27 C -0.175 4.175 28 C -0.165 4.165 29 C -0.091 4.091 30 C -0.005 4.005 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.180 0.820 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.118 0.882 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.379 -7.682 -30.667 31.645 hybrid contribution 0.477 -0.250 1.313 1.419 sum -0.903 -7.933 -29.354 30.420 Atomic orbital electron populations 1.22576 0.99599 1.00889 0.99864 1.20174 0.91765 0.95240 0.85824 0.93388 1.42507 1.78071 1.10863 1.05274 1.19217 1.36503 0.93785 0.87389 0.91301 1.24751 1.02371 0.95959 0.97966 1.69680 1.50774 1.08560 1.28718 0.86233 0.77212 0.78738 0.84258 1.21864 1.21880 1.20895 1.21770 1.01011 0.94292 0.95219 0.90784 1.21613 1.00947 0.98808 0.93812 1.21913 1.00904 0.95814 0.98432 1.22377 1.00658 0.93122 0.87356 1.47972 1.59103 1.17511 1.08418 1.17030 0.77804 0.80883 0.86226 1.90858 1.51105 1.65997 1.31729 1.22068 1.04414 0.98050 0.91661 1.21344 1.05340 0.98714 0.94869 1.21242 1.01831 0.94859 0.93167 1.45881 1.37859 1.16460 1.07455 1.73281 1.21749 1.16865 0.97677 1.22124 1.01006 1.02863 0.73883 1.21943 0.99950 0.95377 1.00182 1.21691 1.02232 0.96635 0.95929 1.20349 0.99827 0.94530 0.94355 1.21882 0.99217 0.93954 0.85442 0.92946 0.94336 0.93214 0.78015 0.93548 0.91622 0.91849 0.91925 0.91314 0.86210 0.92075 0.81995 0.89007 0.88221 0.90329 0.88788 0.90095 0.91063 0.89477 0.88996 0.88178 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.77 37.16 0.33 -2.81 16 2 C 0.18 3.72 2.67 -67.93 -0.18 3.53 16 3 H 0.05 1.01 8.08 -51.92 -0.42 0.59 16 4 N -0.73 -19.01 5.06 -53.42 -0.27 -19.28 16 5 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -29.54 13.06 55.49 0.72 -28.81 16 9 Si 0.90 23.26 29.55 -169.99 -5.02 18.24 16 10 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C -0.10 -1.83 2.27 -90.50 -0.21 -2.04 16 14 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 15 C -0.11 -1.58 4.89 -26.69 -0.13 -1.71 16 16 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 17 C 0.09 1.17 6.11 -3.71 -0.02 1.15 16 18 N -0.60 -10.01 2.97 -173.93 -0.52 -10.53 16 19 C 0.60 10.98 7.69 -12.39 -0.10 10.89 16 20 O -0.52 -11.69 16.36 5.30 0.09 -11.61 16 21 C 0.00 -0.03 6.83 -82.68 -0.56 -0.60 16 22 C -0.17 -2.31 10.76 -39.54 -0.43 -2.74 16 23 C 0.01 0.13 6.57 -82.17 -0.54 -0.41 16 24 N -0.29 -2.84 3.74 -56.69 -0.21 -3.05 16 25 N -0.26 -3.34 8.51 33.46 0.28 -3.05 16 26 C 0.12 0.64 7.17 -3.68 -0.03 0.61 16 27 C -0.14 -0.43 5.92 -26.56 -0.16 -0.58 16 28 C -0.13 -0.46 5.98 -26.42 -0.16 -0.62 16 29 C -0.05 -0.30 6.28 -27.60 -0.17 -0.47 16 30 C 0.12 2.15 5.19 -3.71 -0.02 2.13 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 33 H 0.05 0.93 6.23 -51.93 -0.32 0.61 16 34 H 0.39 10.93 6.47 -40.82 -0.26 10.67 16 35 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.07 0.86 6.62 -51.93 -0.34 0.52 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.12 1.54 4.17 -69.91 -0.29 1.25 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 46 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 47 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.10 2.24 5.81 -51.93 -0.30 1.93 16 52 H 0.07 1.24 6.06 -51.93 -0.31 0.93 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -36.16 397.34 -10.21 -46.36 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.49 Total: 8.74 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.78 Total: -2.99 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.01 Total: -64.73 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.16 -10.21 -46.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.112 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.39 seconds