Wall clock time and date at job start Wed Apr 1 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47026 * 2 1 4 4 N 1.46499 * 109.47589 * 119.99614 * 2 1 3 5 5 C 1.36936 * 120.00077 * 275.00640 * 4 2 1 6 6 H 1.08001 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99771 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00479 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00096 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46886 * 89.99635 * 9 7 5 11 11 H 1.48493 * 109.47365 * 209.99920 * 9 7 5 12 12 H 1.48503 * 109.46818 * 330.00058 * 9 7 5 13 13 C 1.53000 * 109.47443 * 240.00002 * 2 1 3 14 14 H 1.09001 * 109.49725 * 184.92911 * 13 2 1 15 15 C 1.53041 * 109.49502 * 64.83393 * 13 2 1 16 16 C 1.53039 * 109.53952 * 178.68493 * 15 13 2 17 17 C 1.53189 * 109.30964 * 61.36354 * 16 15 13 18 18 N 1.46932 * 108.78010 * 305.36602 * 17 16 15 19 19 C 1.34774 * 120.63183 * 233.63089 * 18 17 16 20 20 O 1.21572 * 119.99567 * 172.99310 * 19 18 17 21 21 C 1.47714 * 120.00022 * 353.00336 * 19 18 17 22 22 C 1.41642 * 126.49544 * 172.92069 * 21 19 18 23 23 C 1.34704 * 105.33460 * 179.82295 * 22 21 19 24 24 N 1.35507 * 107.70947 * 0.44772 * 23 22 21 25 25 N 1.28418 * 109.72273 * 359.67802 * 24 23 22 26 26 C 1.46992 * 123.89851 * 179.68123 * 24 23 22 27 27 C 1.53178 * 108.87570 * 342.26424 * 26 24 23 28 28 C 1.53152 * 109.57369 * 51.17464 * 27 26 24 29 29 C 1.50798 * 127.53519 * 180.15136 * 23 22 21 30 30 C 1.46923 * 118.73419 * 53.60881 * 18 17 16 31 31 H 1.09004 * 109.47177 * 299.99511 * 1 2 3 32 32 H 1.08995 * 109.47315 * 60.00056 * 1 2 3 33 33 H 1.09006 * 109.46457 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00083 * 94.99619 * 4 2 1 35 35 H 0.96997 * 120.00407 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.46428 * 298.70692 * 15 13 2 37 37 H 1.09000 * 109.46173 * 58.66429 * 15 13 2 38 38 H 1.09000 * 109.49648 * 301.41932 * 16 15 13 39 39 H 1.08992 * 109.52742 * 181.33283 * 16 15 13 40 40 H 1.09001 * 109.58692 * 185.57985 * 17 16 15 41 41 H 1.08999 * 109.70351 * 65.22930 * 17 16 15 42 42 H 1.08001 * 127.33035 * 359.93668 * 22 21 19 43 43 H 1.09006 * 109.56777 * 102.18667 * 26 24 23 44 44 H 1.09003 * 109.56841 * 222.53901 * 26 24 23 45 45 H 1.09001 * 109.49007 * 291.12720 * 27 26 24 46 46 H 1.09004 * 109.41501 * 171.17315 * 27 26 24 47 47 H 1.09002 * 109.54256 * 170.50624 * 28 27 26 48 48 H 1.08996 * 109.61377 * 50.28875 * 28 27 26 49 49 H 1.08999 * 109.71898 * 284.46522 * 29 23 22 50 50 H 1.08996 * 109.71611 * 45.11803 * 29 23 22 51 51 H 1.09002 * 109.58400 * 186.60803 * 30 18 17 52 52 H 1.08994 * 109.58489 * 66.18097 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.1492 -0.0073 2.3757 6 1 1.8926 1.0406 2.4242 7 6 2.6115 -0.6618 3.5092 8 7 2.9237 -1.9391 3.4504 9 14 2.7905 0.2702 5.1182 10 1 1.5227 0.1800 5.8862 11 1 3.8947 -0.3235 5.9140 12 1 3.0963 1.6952 4.8333 13 6 2.0401 -0.7212 -1.2492 14 1 3.1265 -0.7985 -1.2065 15 6 1.6320 0.0665 -2.4962 16 6 2.1698 -0.6366 -3.7446 17 6 1.5609 -2.0392 -3.8379 18 7 1.8250 -2.7541 -2.5817 19 6 2.4190 -3.9638 -2.5919 20 8 2.7475 -4.4884 -1.5455 21 6 2.6710 -4.6521 -3.8743 22 6 3.4041 -5.8501 -4.0576 23 6 3.3633 -6.0937 -5.3818 24 7 2.6557 -5.0948 -5.9630 25 7 2.2606 -4.2650 -5.0662 26 6 2.3980 -5.0057 -7.4074 27 6 3.3884 -5.9125 -8.1444 28 6 3.3621 -7.3124 -7.5238 29 6 3.9846 -7.2509 -6.1227 30 6 1.4297 -2.1248 -1.3143 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0278 0.0005 34 1 2.2491 -1.6317 1.1527 35 1 3.2471 -2.3963 4.2424 36 1 0.5448 0.1224 -2.5509 37 1 2.0447 1.0739 -2.4406 38 1 3.2550 -0.7148 -3.6790 39 1 1.8993 -0.0628 -4.6309 40 1 2.0146 -2.5800 -4.6684 41 1 0.4851 -1.9630 -3.9958 42 1 3.8906 -6.4431 -3.2972 43 1 1.3785 -5.3296 -7.6170 44 1 2.5313 -3.9760 -7.7392 45 1 4.3929 -5.4974 -8.0611 46 1 3.1081 -5.9763 -9.1958 47 1 3.9351 -7.9986 -8.1475 48 1 2.3319 -7.6606 -7.4500 49 1 5.0609 -7.0997 -6.2048 50 1 3.7828 -8.1798 -5.5894 51 1 1.7969 -2.7220 -0.4797 52 1 0.3432 -2.0534 -1.2651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732529780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:29 Heat of formation + Delta-G solvation = 31.929677 kcal Electronic energy + Delta-G solvation = -31268.725376 eV Core-core repulsion = 27268.981833 eV Total energy + Delta-G solvation = -3999.743543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.87586 -41.18518 -39.14898 -37.50897 -36.92600 -34.67086 -34.06677 -33.24090 -31.88922 -31.07038 -29.65814 -29.34611 -27.04380 -26.29257 -25.28666 -24.58794 -23.87821 -22.99709 -22.29696 -20.91310 -20.20361 -19.67644 -19.15678 -18.06087 -17.72724 -17.18086 -17.03326 -16.69493 -16.13176 -15.86337 -15.55624 -15.43456 -15.26124 -15.20611 -15.00487 -14.80047 -14.60136 -14.38950 -14.20473 -13.96672 -13.93353 -13.71459 -13.32554 -13.00100 -12.85899 -12.83554 -12.68877 -12.55217 -12.22486 -12.02906 -11.96026 -11.87867 -11.84163 -11.80896 -11.78325 -11.49591 -11.40164 -11.21846 -10.95394 -10.83274 -10.13436 -9.92634 -9.58159 -9.00433 -7.91070 -5.21079 0.44224 1.08744 1.43006 1.44417 1.47819 1.56024 1.99685 2.28120 2.56638 3.16900 3.41011 3.50294 3.65278 3.74534 3.81823 3.88711 3.90664 3.95686 4.08162 4.12169 4.26171 4.33601 4.34899 4.41432 4.43143 4.49519 4.61799 4.64008 4.69407 4.71666 4.74996 4.83066 4.88722 4.89920 4.95218 5.03486 5.06158 5.07968 5.10066 5.12451 5.15752 5.22210 5.29965 5.33324 5.35953 5.45062 5.53991 5.59153 5.68460 5.91205 6.29541 6.34907 6.84202 7.11492 7.34061 8.12516 8.34504 9.32595 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.002400 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.685148 B =11663.560229 C =12785.279704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.742 5.742 5 C -0.235 4.235 6 H 0.080 0.920 7 C -0.085 4.085 8 N -0.975 5.975 9 Si 0.976 3.024 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.091 4.091 14 H 0.041 0.959 15 C -0.106 4.106 16 C -0.125 4.125 17 C 0.085 3.915 18 N -0.596 5.596 19 C 0.585 3.415 20 O -0.583 6.583 21 C -0.036 4.036 22 C -0.208 4.208 23 C 0.031 3.969 24 N -0.276 5.276 25 N -0.257 5.257 26 C 0.106 3.894 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.054 4.054 30 C 0.124 3.876 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.104 0.896 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.049 0.951 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -7.014 -35.199 35.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.067 0.933 4 N -0.382 5.382 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.276 4.276 8 N -0.626 5.626 9 Si 0.805 3.195 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.144 4.144 16 C -0.163 4.163 17 C -0.037 4.037 18 N -0.327 5.327 19 C 0.373 3.627 20 O -0.462 6.462 21 C -0.194 4.194 22 C -0.236 4.236 23 C -0.094 4.094 24 N -0.065 5.065 25 N -0.094 5.094 26 C -0.011 4.011 27 C -0.169 4.169 28 C -0.162 4.162 29 C -0.093 4.093 30 C 0.002 3.998 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.170 0.830 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.095 0.905 46 H 0.143 0.857 47 H 0.122 0.878 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.116 0.884 51 H 0.067 0.933 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.469 -6.251 -35.235 35.870 hybrid contribution 0.785 -0.690 2.507 2.717 sum -1.684 -6.940 -32.727 33.498 Atomic orbital electron populations 1.22400 0.97267 1.00831 1.01183 1.20467 0.93264 0.94879 0.84903 0.93252 1.42793 1.78479 1.10326 1.06600 1.19673 1.34537 0.94227 0.88262 0.90253 1.25655 1.03270 0.96883 1.01812 1.69887 1.52876 1.10524 1.29280 0.85101 0.76791 0.78037 0.79617 1.21391 1.22572 1.19068 1.21600 0.98803 0.94305 0.96370 0.94025 1.21600 1.02247 0.98695 0.91888 1.21903 0.99877 0.95311 0.99211 1.22667 1.02024 0.93375 0.85618 1.48092 1.58278 1.17242 1.09063 1.17593 0.77059 0.81164 0.86895 1.90807 1.53741 1.67524 1.34094 1.21635 1.07189 0.99308 0.91256 1.21469 1.06662 0.98839 0.96670 1.21726 1.00169 0.95385 0.92143 1.46445 1.35966 1.15294 1.08808 1.73132 1.21620 1.17498 0.97132 1.22710 1.02816 1.04678 0.70942 1.21997 0.99208 0.94255 1.01400 1.21722 1.02359 0.97602 0.94470 1.20582 1.00384 0.92788 0.95521 1.21618 0.99522 0.93628 0.85054 0.94512 0.90011 0.93961 0.79950 0.94287 0.89636 0.90477 0.93374 0.87199 0.85494 0.90145 0.83011 0.87296 0.86758 0.90545 0.85654 0.87768 0.91108 0.88246 0.88383 0.93277 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 8.77 71.98 0.63 -5.04 16 2 C 0.17 7.21 2.67 44.99 0.12 7.33 16 3 H 0.05 2.04 8.08 -2.38 -0.02 2.03 16 4 N -0.74 -40.69 5.06 -322.93 -1.63 -42.32 16 5 C -0.24 -13.87 9.93 84.03 0.83 -13.04 16 6 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 7 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 8 N -0.97 -65.17 13.06 21.65 0.28 -64.88 16 9 Si 0.98 49.11 29.55 68.60 2.03 51.13 16 10 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 C -0.09 -3.30 2.27 -10.72 -0.02 -3.33 16 14 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.69 4.89 30.62 0.15 -2.54 16 16 C -0.12 -2.75 6.08 30.67 0.19 -2.56 16 17 C 0.08 2.12 6.11 86.36 0.53 2.64 16 18 N -0.60 -20.83 2.97 -822.46 -2.44 -23.28 16 19 C 0.58 23.46 7.69 86.75 0.67 24.13 16 20 O -0.58 -29.17 16.36 -3.94 -0.06 -29.23 16 21 C -0.04 -1.17 6.83 42.48 0.29 -0.88 16 22 C -0.21 -5.86 10.76 22.30 0.24 -5.62 16 23 C 0.03 0.59 6.57 41.21 0.27 0.86 16 24 N -0.28 -4.94 3.74 -333.28 -1.25 -6.19 16 25 N -0.26 -6.40 8.51 -48.05 -0.41 -6.81 16 26 C 0.11 0.73 7.17 86.35 0.62 1.35 16 27 C -0.13 -0.26 5.92 30.70 0.18 -0.08 16 28 C -0.12 -0.43 5.98 30.79 0.18 -0.24 16 29 C -0.05 -0.51 6.28 30.03 0.19 -0.32 16 30 C 0.12 4.84 5.19 86.36 0.45 5.29 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 2.23 6.59 -2.39 -0.02 2.22 16 33 H 0.04 1.57 6.23 -2.38 -0.01 1.56 16 34 H 0.37 22.54 6.47 -92.71 -0.60 21.94 16 35 H 0.25 16.12 8.31 -92.71 -0.77 15.35 16 36 H 0.09 1.87 6.62 -2.39 -0.02 1.85 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.13 3.06 4.17 -25.65 -0.11 2.96 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.25 8.11 -2.39 -0.02 0.23 16 46 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.07 0.30 8.12 -2.39 -0.02 0.28 16 49 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.05 2.43 5.81 -2.39 -0.01 2.42 16 52 H 0.08 2.99 6.06 -2.39 -0.01 2.97 16 Total: -1.00 -86.83 397.34 2.73 -84.11 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.23 Total: 34.27 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.98 Total: 3.21 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -5.45 Total: -143.48 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.13 kcal Total: -86.83 2.73 -84.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732529780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.037 kcal (2) G-P(sol) polarization free energy of solvation -86.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds