Wall clock time and date at job start Wed Apr 1 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47499 * 2 1 4 4 N 1.46501 * 109.47225 * 239.99226 * 2 1 3 5 5 C 1.36936 * 119.99592 * 85.00345 * 4 2 1 6 6 H 1.08000 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00064 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00076 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99527 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46878 * 90.00389 * 9 7 5 11 11 H 1.48498 * 109.46960 * 209.99870 * 9 7 5 12 12 H 1.48496 * 109.47557 * 330.00397 * 9 7 5 13 13 C 1.53004 * 109.46698 * 119.99490 * 2 1 3 14 14 H 1.08995 * 109.52537 * 60.08308 * 13 2 1 15 15 C 1.53038 * 109.50200 * 300.00006 * 13 2 1 16 16 C 1.53040 * 109.54044 * 178.68486 * 15 13 2 17 17 C 1.53193 * 109.31225 * 61.36583 * 16 15 13 18 18 N 1.46927 * 108.77479 * 305.36640 * 17 16 15 19 19 C 1.34779 * 120.62818 * 233.58732 * 18 17 16 20 20 O 1.21633 * 119.99766 * 174.86701 * 19 18 17 21 21 C 1.47162 * 120.00190 * 354.86915 * 19 18 17 22 22 C 1.38407 * 126.88723 * 99.88103 * 21 19 18 23 23 C 1.50700 * 127.31833 * 359.97438 * 22 21 19 24 24 C 1.52998 * 117.49897 * 188.62214 * 23 22 21 25 25 C 1.52998 * 117.49662 * 120.00066 * 23 22 21 26 26 C 1.39667 * 105.35750 * 180.02562 * 22 21 19 27 27 N 1.30868 * 107.86553 * 359.97438 * 26 22 21 28 28 N 1.28437 * 110.92339 * 359.71407 * 27 26 22 29 29 C 1.46501 * 125.19162 * 180.27512 * 28 27 26 30 30 C 1.46928 * 118.74242 * 53.60921 * 18 17 16 31 31 H 1.08993 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46981 * 300.00668 * 1 2 3 33 33 H 1.08994 * 109.46749 * 60.00255 * 1 2 3 34 34 H 0.96997 * 120.00033 * 265.00272 * 4 2 1 35 35 H 0.96997 * 119.99884 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.45663 * 58.66046 * 15 13 2 37 37 H 1.09002 * 109.45854 * 298.71126 * 15 13 2 38 38 H 1.08998 * 109.49759 * 181.31349 * 16 15 13 39 39 H 1.08997 * 109.49422 * 301.41288 * 16 15 13 40 40 H 1.09003 * 109.58856 * 65.15085 * 17 16 15 41 41 H 1.08997 * 109.58457 * 185.43378 * 17 16 15 42 42 H 1.08995 * 115.55073 * 334.33325 * 23 22 21 43 43 H 1.09002 * 117.49446 * 0.02562 * 24 23 22 44 44 H 1.08999 * 117.50241 * 145.02391 * 24 23 22 45 45 H 1.08994 * 117.50150 * 214.97954 * 25 23 22 46 46 H 1.08999 * 117.49814 * 0.02562 * 25 23 22 47 47 H 1.07999 * 126.06816 * 180.02562 * 26 22 21 48 48 H 1.08997 * 109.47230 * 275.20231 * 29 28 27 49 49 H 1.09006 * 109.46926 * 35.19601 * 29 28 27 50 50 H 1.09000 * 109.47506 * 155.19681 * 29 28 27 51 51 H 1.08999 * 109.58667 * 66.17787 * 30 18 17 52 52 H 1.08992 * 109.58888 * 186.46670 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4243 7 6 2.6115 -0.6623 -3.5092 8 7 2.7368 -0.0059 -4.6431 9 14 3.0557 -2.4747 -3.4251 10 1 1.8582 -3.2931 -3.7439 11 1 4.1307 -2.7670 -4.4070 12 1 3.5311 -2.8050 -2.0576 13 6 2.0400 -0.7212 1.2494 14 1 1.6783 -1.7494 1.2496 15 6 1.5302 -0.0002 2.4993 16 6 2.0125 -0.7397 3.7493 17 6 3.5441 -0.7367 3.7804 18 7 4.0438 -1.2969 2.5173 19 6 4.9187 -2.3221 2.5194 20 8 5.2532 -2.8383 1.4700 21 6 5.4693 -2.8171 3.7912 22 6 5.0542 -3.9323 4.4982 23 6 3.9496 -4.8888 4.1295 24 6 3.5422 -5.9328 5.1711 25 6 4.3256 -6.3580 3.9276 26 6 5.8760 -3.9819 5.6264 27 7 6.7012 -2.9679 5.5670 28 7 6.4966 -2.2715 4.5075 29 6 7.2470 -1.0720 4.1275 30 6 3.5720 -0.7180 1.2520 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2491 -1.6319 -1.1524 35 1 3.0601 -0.4632 -5.4350 36 1 0.4404 0.0206 2.4874 37 1 1.9124 1.0206 2.5110 38 1 1.6297 -0.2390 4.6386 39 1 1.6511 -1.7677 3.7259 40 1 3.9053 0.2853 3.8950 41 1 3.8938 -1.3436 4.6155 42 1 3.1648 -4.4782 3.4943 43 1 4.0730 -5.9275 6.1232 44 1 2.4891 -6.2092 5.2215 45 1 3.7878 -6.9142 3.1598 46 1 5.3718 -6.6328 4.0618 47 1 5.8378 -4.7257 6.4086 48 1 6.8152 -0.2016 4.6215 49 1 8.2879 -1.1831 4.4316 50 1 7.1964 -0.9388 3.0469 51 1 3.9354 0.3055 1.1605 52 1 3.9421 -1.3133 0.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732531697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:16 Heat of formation + Delta-G solvation = 83.319750 kcal Electronic energy + Delta-G solvation = -32075.884019 eV Core-core repulsion = 28078.368916 eV Total energy + Delta-G solvation = -3997.515102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.80395 -40.06622 -37.90403 -37.43717 -35.65606 -33.43373 -33.04962 -31.88777 -31.21151 -30.12178 -28.59410 -27.38162 -25.73059 -24.40353 -23.65947 -22.96472 -22.61474 -22.23792 -20.78425 -20.21809 -19.82839 -19.09241 -17.97159 -17.39743 -16.76488 -15.99514 -15.86388 -15.67236 -15.14031 -14.90581 -14.53210 -14.48476 -14.37751 -14.13574 -13.65051 -13.43074 -13.18237 -13.07224 -12.99963 -12.98287 -12.89906 -12.43593 -12.25400 -12.20146 -11.71672 -11.62730 -11.27269 -11.19356 -11.16921 -11.00363 -10.89348 -10.82042 -10.69791 -10.52642 -10.37659 -10.19704 -10.08355 -9.85006 -9.54092 -9.34229 -8.93209 -8.71032 -8.67879 -7.24886 -5.74471 -3.09975 1.42233 1.94926 2.37544 2.56624 2.95339 3.43801 3.50967 3.53259 3.77124 4.11912 4.19913 4.59112 4.61690 4.64144 4.68196 4.75745 4.78682 4.83953 4.86073 4.96477 5.01091 5.05651 5.07022 5.18032 5.28124 5.33396 5.44368 5.48514 5.52259 5.59019 5.64963 5.67306 5.73676 5.78078 5.85135 5.93226 5.98717 6.00854 6.02909 6.10286 6.23546 6.25840 6.31294 6.35301 6.46171 6.50689 6.55761 6.80185 6.99362 7.24081 7.82721 7.97516 8.01151 8.44637 9.23241 9.96384 10.15508 11.43744 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.003441 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.702967 B = 8136.392176 C = 8605.242292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.008 3.992 8 N -0.934 5.934 9 Si 0.877 3.123 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.272 1.272 13 C -0.106 4.106 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.131 4.131 17 C 0.108 3.892 18 N -0.599 5.599 19 C 0.586 3.414 20 O -0.511 6.511 21 C -0.014 4.014 22 C -0.125 4.125 23 C -0.082 4.082 24 C -0.169 4.169 25 C -0.167 4.167 26 C 0.007 3.993 27 N -0.284 5.284 28 N -0.274 5.274 29 C 0.087 3.913 30 C 0.120 3.880 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.183 0.817 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.073 0.927 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -4.342 26.156 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.188 4.188 8 N -0.582 5.582 9 Si 0.707 3.293 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.197 1.197 13 C -0.127 4.127 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.170 4.170 17 C -0.015 4.015 18 N -0.332 5.332 19 C 0.370 3.630 20 O -0.384 6.384 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.101 4.101 24 C -0.206 4.206 25 C -0.204 4.204 26 C -0.170 4.170 27 N -0.114 5.114 28 N -0.062 5.062 29 C -0.053 4.053 30 C -0.001 4.001 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.200 0.800 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.112 0.888 51 H 0.091 0.909 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.927 -3.752 25.891 26.454 hybrid contribution -0.315 -1.638 -0.510 1.745 sum 3.611 -5.390 25.381 26.197 Atomic orbital electron populations 1.22447 0.98706 1.00875 1.00472 1.20146 0.92088 0.95516 0.84681 0.92596 1.42833 1.79675 1.09551 1.07148 1.19031 1.37100 0.95529 0.85571 0.89229 1.24627 1.01295 0.97342 0.95546 1.69693 1.52672 1.35593 1.00256 0.86654 0.78110 0.86945 0.77597 1.21200 1.21778 1.19745 1.21813 0.94402 1.00670 0.95765 0.91131 1.21628 1.01328 0.99100 0.93172 1.21894 0.94377 1.01747 0.98944 1.21733 0.95189 0.98953 0.85646 1.48191 1.43627 1.32978 1.08421 1.17109 0.79681 0.79711 0.86522 1.90912 1.59915 1.55840 1.31726 1.21259 0.96733 0.99146 0.97081 1.19747 1.00984 0.96603 0.96228 1.20148 0.97616 0.89017 1.03351 1.22972 1.00963 1.02692 0.94021 1.23001 1.01282 0.96093 1.00052 1.23314 0.95565 0.98355 0.99804 1.73141 1.24917 1.06955 1.06421 1.45512 1.24509 1.21665 1.14531 1.22195 0.97434 0.83178 1.02520 1.21811 0.94331 0.99163 0.84799 0.93683 0.93931 0.92343 0.80570 0.93106 0.90863 0.91598 0.90757 0.91438 0.91304 0.90324 0.87288 0.88548 0.88423 0.88402 0.88607 0.80019 0.89490 0.88281 0.88789 0.90876 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.14 37.16 0.34 -2.38 16 2 C 0.19 3.32 2.47 -67.92 -0.17 3.15 16 3 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.75 -17.25 4.33 -53.42 -0.23 -17.48 16 5 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 8 N -0.93 -29.47 13.97 55.49 0.78 -28.70 16 9 Si 0.88 22.84 27.73 -169.99 -4.71 18.13 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 12 H -0.27 -6.90 6.52 56.52 0.37 -6.53 16 13 C -0.11 -1.55 1.97 -90.50 -0.18 -1.73 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.24 4.85 -26.69 -0.13 -1.37 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C 0.11 1.06 6.31 -3.71 -0.02 1.03 16 18 N -0.60 -7.94 2.97 -174.13 -0.52 -8.45 16 19 C 0.59 9.01 6.71 -12.64 -0.08 8.92 16 20 O -0.51 -10.22 16.52 5.25 0.09 -10.13 16 21 C -0.01 -0.18 4.67 -82.06 -0.38 -0.56 16 22 C -0.13 -1.50 5.94 -104.03 -0.62 -2.12 16 23 C -0.08 -0.90 6.12 -91.77 -0.56 -1.46 16 24 C -0.17 -1.37 10.05 -26.73 -0.27 -1.64 16 25 C -0.17 -1.63 10.23 -26.73 -0.27 -1.90 16 26 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 27 N -0.28 -3.35 11.90 30.59 0.36 -2.99 16 28 N -0.27 -3.16 3.75 -63.88 -0.24 -3.40 16 29 C 0.09 0.71 11.22 59.85 0.67 1.38 16 30 C 0.12 1.86 5.48 -3.71 -0.02 1.84 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.36 8.51 5.49 -40.82 -0.22 8.28 16 35 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 36 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.77 6.39 -51.93 -0.33 0.44 16 42 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.10 0.65 7.12 -51.93 -0.37 0.28 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.18 1.41 7.34 -52.49 -0.39 1.02 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 51 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 52 H 0.10 2.03 6.52 -51.93 -0.34 1.69 16 LS Contribution 412.18 15.07 6.21 6.21 Total: -1.00 -34.81 412.18 -9.22 -44.02 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.64 Total: 7.85 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.31 Total: -5.06 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.15 Total: -61.02 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.81 -9.22 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.344 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds