Wall clock time and date at job start Wed Apr 1 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47499 * 2 1 4 4 N 1.46501 * 109.47225 * 239.99226 * 2 1 3 5 5 C 1.36936 * 119.99592 * 85.00345 * 4 2 1 6 6 H 1.08000 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00064 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00076 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99527 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46878 * 90.00389 * 9 7 5 11 11 H 1.48498 * 109.46960 * 209.99870 * 9 7 5 12 12 H 1.48496 * 109.47557 * 330.00397 * 9 7 5 13 13 C 1.53004 * 109.46698 * 119.99490 * 2 1 3 14 14 H 1.08995 * 109.52537 * 60.08308 * 13 2 1 15 15 C 1.53038 * 109.50200 * 300.00006 * 13 2 1 16 16 C 1.53040 * 109.54044 * 178.68486 * 15 13 2 17 17 C 1.53193 * 109.31225 * 61.36583 * 16 15 13 18 18 N 1.46927 * 108.77479 * 305.36640 * 17 16 15 19 19 C 1.34779 * 120.62818 * 233.58732 * 18 17 16 20 20 O 1.21633 * 119.99766 * 174.86701 * 19 18 17 21 21 C 1.47162 * 120.00190 * 354.86915 * 19 18 17 22 22 C 1.38407 * 126.88723 * 99.88103 * 21 19 18 23 23 C 1.50700 * 127.31833 * 359.97438 * 22 21 19 24 24 C 1.52998 * 117.49897 * 188.62214 * 23 22 21 25 25 C 1.52998 * 117.49662 * 120.00066 * 23 22 21 26 26 C 1.39667 * 105.35750 * 180.02562 * 22 21 19 27 27 N 1.30868 * 107.86553 * 359.97438 * 26 22 21 28 28 N 1.28437 * 110.92339 * 359.71407 * 27 26 22 29 29 C 1.46501 * 125.19162 * 180.27512 * 28 27 26 30 30 C 1.46928 * 118.74242 * 53.60921 * 18 17 16 31 31 H 1.08993 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46981 * 300.00668 * 1 2 3 33 33 H 1.08994 * 109.46749 * 60.00255 * 1 2 3 34 34 H 0.96997 * 120.00033 * 265.00272 * 4 2 1 35 35 H 0.96997 * 119.99884 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.45663 * 58.66046 * 15 13 2 37 37 H 1.09002 * 109.45854 * 298.71126 * 15 13 2 38 38 H 1.08998 * 109.49759 * 181.31349 * 16 15 13 39 39 H 1.08997 * 109.49422 * 301.41288 * 16 15 13 40 40 H 1.09003 * 109.58856 * 65.15085 * 17 16 15 41 41 H 1.08997 * 109.58457 * 185.43378 * 17 16 15 42 42 H 1.08995 * 115.55073 * 334.33325 * 23 22 21 43 43 H 1.09002 * 117.49446 * 0.02562 * 24 23 22 44 44 H 1.08999 * 117.50241 * 145.02391 * 24 23 22 45 45 H 1.08994 * 117.50150 * 214.97954 * 25 23 22 46 46 H 1.08999 * 117.49814 * 0.02562 * 25 23 22 47 47 H 1.07999 * 126.06816 * 180.02562 * 26 22 21 48 48 H 1.08997 * 109.47230 * 275.20231 * 29 28 27 49 49 H 1.09006 * 109.46926 * 35.19601 * 29 28 27 50 50 H 1.09000 * 109.47506 * 155.19681 * 29 28 27 51 51 H 1.08999 * 109.58667 * 66.17787 * 30 18 17 52 52 H 1.08992 * 109.58888 * 186.46670 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4243 7 6 2.6115 -0.6623 -3.5092 8 7 2.7368 -0.0059 -4.6431 9 14 3.0557 -2.4747 -3.4251 10 1 1.8582 -3.2931 -3.7439 11 1 4.1307 -2.7670 -4.4070 12 1 3.5311 -2.8050 -2.0576 13 6 2.0400 -0.7212 1.2494 14 1 1.6783 -1.7494 1.2496 15 6 1.5302 -0.0002 2.4993 16 6 2.0125 -0.7397 3.7493 17 6 3.5441 -0.7367 3.7804 18 7 4.0438 -1.2969 2.5173 19 6 4.9187 -2.3221 2.5194 20 8 5.2532 -2.8383 1.4700 21 6 5.4693 -2.8171 3.7912 22 6 5.0542 -3.9323 4.4982 23 6 3.9496 -4.8888 4.1295 24 6 3.5422 -5.9328 5.1711 25 6 4.3256 -6.3580 3.9276 26 6 5.8760 -3.9819 5.6264 27 7 6.7012 -2.9679 5.5670 28 7 6.4966 -2.2715 4.5075 29 6 7.2470 -1.0720 4.1275 30 6 3.5720 -0.7180 1.2520 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.2491 -1.6319 -1.1524 35 1 3.0601 -0.4632 -5.4350 36 1 0.4404 0.0206 2.4874 37 1 1.9124 1.0206 2.5110 38 1 1.6297 -0.2390 4.6386 39 1 1.6511 -1.7677 3.7259 40 1 3.9053 0.2853 3.8950 41 1 3.8938 -1.3436 4.6155 42 1 3.1648 -4.4782 3.4943 43 1 4.0730 -5.9275 6.1232 44 1 2.4891 -6.2092 5.2215 45 1 3.7878 -6.9142 3.1598 46 1 5.3718 -6.6328 4.0618 47 1 5.8378 -4.7257 6.4086 48 1 6.8152 -0.2016 4.6215 49 1 8.2879 -1.1831 4.4316 50 1 7.1964 -0.9388 3.0469 51 1 3.9354 0.3055 1.1605 52 1 3.9421 -1.3133 0.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732531697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:14 Heat of formation + Delta-G solvation = 61.375377 kcal Electronic energy + Delta-G solvation = -32076.835598 eV Core-core repulsion = 28078.368916 eV Total energy + Delta-G solvation = -3998.466682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.67142 -41.20485 -39.18645 -38.18981 -37.13923 -34.75653 -34.13871 -33.35722 -32.26920 -31.60299 -30.01863 -28.12526 -26.81076 -25.88796 -24.68949 -24.30168 -23.43760 -23.14027 -21.99076 -21.26394 -21.02758 -20.04733 -19.61282 -18.78089 -17.79517 -16.95440 -16.80935 -16.72681 -16.52546 -16.20725 -15.92959 -15.52748 -15.35018 -15.21210 -15.00721 -14.52979 -14.40936 -14.31271 -14.22700 -13.99520 -13.82683 -13.75151 -13.58861 -13.24704 -13.01376 -12.89457 -12.62170 -12.42890 -12.36327 -12.23063 -12.04296 -11.97198 -11.86504 -11.75648 -11.68644 -11.49873 -11.36009 -11.28414 -11.18022 -11.00577 -10.20418 -9.82381 -9.55451 -9.30571 -8.04276 -5.34280 0.49525 0.96967 1.31425 1.36500 1.41430 1.52888 1.56595 1.95646 2.44293 3.02731 3.20325 3.28850 3.39091 3.50593 3.73693 3.86347 3.87826 3.93579 4.00889 4.03984 4.09813 4.19369 4.20538 4.22196 4.25953 4.35825 4.44991 4.48753 4.52481 4.59902 4.67841 4.79570 4.79910 4.84197 4.85636 4.87789 4.98404 5.01261 5.03443 5.11530 5.21313 5.24653 5.27778 5.32252 5.35952 5.44544 5.49020 5.61109 5.68843 5.78770 6.14728 6.21563 6.82261 6.98076 7.07661 7.86206 8.01992 9.17620 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.003441 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.702967 B = 8136.392176 C = 8605.242292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.177 3.823 3 H 0.053 0.947 4 N -0.754 5.754 5 C -0.215 4.215 6 H 0.066 0.934 7 C -0.056 4.056 8 N -0.982 5.982 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.268 1.268 13 C -0.094 4.094 14 H 0.059 0.941 15 C -0.108 4.108 16 C -0.124 4.124 17 C 0.104 3.896 18 N -0.589 5.589 19 C 0.588 3.412 20 O -0.572 6.572 21 C -0.037 4.037 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.138 4.138 25 C -0.177 4.177 26 C 0.009 3.991 27 N -0.290 5.290 28 N -0.273 5.273 29 C 0.079 3.921 30 C 0.124 3.876 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.359 0.641 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.213 0.787 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -4.631 30.677 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.071 0.929 4 N -0.397 5.397 5 C -0.346 4.346 6 H 0.084 0.916 7 C -0.248 4.248 8 N -0.633 5.633 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 C -0.114 4.114 14 H 0.077 0.923 15 C -0.146 4.146 16 C -0.162 4.162 17 C -0.017 4.017 18 N -0.320 5.320 19 C 0.373 3.627 20 O -0.450 6.450 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.175 4.175 25 C -0.214 4.214 26 C -0.168 4.168 27 N -0.121 5.121 28 N -0.062 5.062 29 C -0.060 4.060 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.191 0.809 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.230 0.770 48 H 0.130 0.870 49 H 0.133 0.867 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.066 -4.011 30.510 30.925 hybrid contribution -0.076 -1.458 -1.828 2.340 sum 2.990 -5.469 28.682 29.351 Atomic orbital electron populations 1.22309 0.96879 1.01105 1.01241 1.20455 0.93242 0.95235 0.84123 0.92930 1.42941 1.79857 1.09475 1.07443 1.19046 1.34025 0.94586 0.86961 0.91605 1.25250 1.02937 1.01036 0.95560 1.69833 1.55276 1.37174 1.01026 0.85669 0.77652 0.82718 0.77272 1.20444 1.22587 1.19361 1.21666 0.93417 1.00150 0.96126 0.92273 1.21619 1.02111 0.99347 0.91498 1.21879 0.93419 1.01558 0.99331 1.22030 0.95912 0.99988 0.83761 1.48215 1.42703 1.32141 1.08983 1.17432 0.79321 0.79347 0.86570 1.90871 1.62096 1.57987 1.34027 1.21025 0.98236 1.00512 0.96737 1.19978 1.01199 0.96069 0.96378 1.20147 0.97546 0.89506 1.05424 1.23092 1.01688 0.98969 0.93745 1.23051 1.01691 0.95116 1.01566 1.23774 0.94586 0.98489 0.99903 1.73142 1.25107 1.07372 1.06479 1.45758 1.24052 1.22188 1.14179 1.22447 0.98392 0.83085 1.02102 1.21574 0.95120 0.98486 0.84664 0.93711 0.89772 0.94937 0.80874 0.93520 0.89453 0.90253 0.87291 0.92157 0.89003 0.89750 0.89179 0.86488 0.87085 0.88650 0.88686 0.77040 0.86957 0.86697 0.90062 0.90277 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.14 71.98 0.66 -4.21 16 2 C 0.18 6.23 2.47 44.99 0.11 6.34 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.75 -35.31 4.33 -322.92 -1.40 -36.71 16 5 C -0.22 -12.25 10.41 84.03 0.87 -11.37 16 6 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 7 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 8 N -0.98 -64.13 13.97 21.65 0.30 -63.83 16 9 Si 0.94 49.07 27.73 68.60 1.90 50.97 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 12 H -0.27 -13.70 6.52 99.48 0.65 -13.05 16 13 C -0.09 -2.61 1.97 -10.71 -0.02 -2.64 16 14 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.11 -1.94 4.85 30.62 0.15 -1.79 16 16 C -0.12 -1.79 6.08 30.67 0.19 -1.60 16 17 C 0.10 1.75 6.31 86.36 0.55 2.30 16 18 N -0.59 -15.31 2.97 -823.06 -2.45 -17.76 16 19 C 0.59 18.48 6.71 86.59 0.58 19.06 16 20 O -0.57 -24.27 16.52 -4.13 -0.07 -24.33 16 21 C -0.04 -0.94 4.67 40.79 0.19 -0.75 16 22 C -0.13 -2.86 5.94 -19.48 -0.12 -2.97 16 23 C -0.11 -2.24 6.12 -11.54 -0.07 -2.31 16 24 C -0.14 -1.85 10.05 30.59 0.31 -1.54 16 25 C -0.18 -3.27 10.23 30.59 0.31 -2.96 16 26 C 0.01 0.18 11.41 85.18 0.97 1.15 16 27 N -0.29 -6.21 11.90 -57.14 -0.68 -6.89 16 28 N -0.27 -5.93 3.75 -356.01 -1.33 -7.26 16 29 C 0.08 1.18 11.22 127.77 1.43 2.61 16 30 C 0.12 3.87 5.48 86.36 0.47 4.35 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.93 6.40 -2.39 -0.02 1.92 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.36 17.21 5.49 -92.71 -0.51 16.70 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.09 1.39 6.36 -2.39 -0.02 1.38 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.40 6.39 -2.39 -0.02 1.39 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.12 1.10 7.12 -2.39 -0.02 1.08 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.21 2.47 7.34 -2.91 -0.02 2.44 16 48 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.08 1.42 7.65 -2.39 -0.02 1.40 16 51 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.06 2.33 6.52 -2.39 -0.02 2.31 16 Total: -1.00 -80.47 412.18 3.68 -76.79 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.35 Total: 28.32 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 7.05 Total: 0.71 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.56 Total: -132.45 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 1.90 Total: 50.97 kcal Total: -80.47 3.68 -76.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.163 kcal (2) G-P(sol) polarization free energy of solvation -80.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds