Wall clock time and date at job start Wed Apr 1 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46825 * 2 1 4 4 N 1.46499 * 109.47066 * 239.99384 * 2 1 3 5 5 C 1.36936 * 119.99445 * 85.00597 * 4 2 1 6 6 H 1.07991 * 120.00480 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99507 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00024 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99635 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47449 * 89.99837 * 9 7 5 11 11 H 1.48505 * 109.46911 * 209.99628 * 9 7 5 12 12 H 1.48501 * 109.47158 * 329.99318 * 9 7 5 13 13 C 1.52999 * 109.46628 * 119.99717 * 2 1 3 14 14 H 1.09004 * 109.49443 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.49901 * 299.99717 * 13 2 1 16 16 C 1.53045 * 109.53726 * 181.31783 * 15 13 2 17 17 C 1.53190 * 109.31264 * 298.63755 * 16 15 13 18 18 N 1.46920 * 108.77558 * 54.63579 * 17 16 15 19 19 C 1.34781 * 120.63105 * 126.36917 * 18 17 16 20 20 O 1.21629 * 120.00170 * 185.11481 * 19 18 17 21 21 C 1.47166 * 120.00051 * 5.11133 * 19 18 17 22 22 C 1.38410 * 126.88351 * 92.58908 * 21 19 18 23 23 C 1.50701 * 127.31862 * 0.02562 * 22 21 19 24 24 C 1.52998 * 117.49605 * 188.74336 * 23 22 21 25 25 C 1.53004 * 117.49339 * 120.08547 * 23 22 21 26 26 C 1.39673 * 105.35760 * 179.97438 * 22 21 19 27 27 N 1.30862 * 107.86292 * 359.97438 * 26 22 21 28 28 N 1.28449 * 110.93026 * 0.02562 * 27 26 22 29 29 C 1.46493 * 125.19384 * 180.26739 * 28 27 26 30 30 C 1.46923 * 118.74185 * 306.64225 * 18 17 16 31 31 H 1.08998 * 109.47471 * 300.00598 * 1 2 3 32 32 H 1.09002 * 109.46774 * 60.00449 * 1 2 3 33 33 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00078 * 264.99555 * 4 2 1 35 35 H 0.97001 * 119.99884 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45924 * 61.30200 * 15 13 2 37 37 H 1.08998 * 109.45210 * 301.33305 * 15 13 2 38 38 H 1.08998 * 109.49170 * 178.68803 * 16 15 13 39 39 H 1.09000 * 109.49339 * 58.59186 * 16 15 13 40 40 H 1.09000 * 109.58436 * 294.84416 * 17 16 15 41 41 H 1.09000 * 109.58379 * 174.42399 * 17 16 15 42 42 H 1.08994 * 115.55013 * 334.42080 * 23 22 21 43 43 H 1.08997 * 117.49665 * 0.02562 * 24 23 22 44 44 H 1.08998 * 117.49272 * 145.02578 * 24 23 22 45 45 H 1.08994 * 117.50118 * 214.97704 * 25 23 22 46 46 H 1.09003 * 117.49721 * 0.02562 * 25 23 22 47 47 H 1.08002 * 126.06736 * 180.02562 * 26 22 21 48 48 H 1.08998 * 109.46983 * 264.66798 * 29 28 27 49 49 H 1.09001 * 109.47316 * 24.66111 * 29 28 27 50 50 H 1.08991 * 109.47412 * 144.66310 * 29 28 27 51 51 H 1.08998 * 109.58978 * 173.14505 * 30 18 17 52 52 H 1.09007 * 109.58448 * 293.57161 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8920 1.0401 -2.4243 7 6 2.6124 -0.6620 -3.5089 8 7 2.9263 -1.9388 -3.4495 9 14 2.7916 0.2700 -5.1178 10 1 4.1538 0.8551 -5.2020 11 1 2.5817 -0.6613 -6.2554 12 1 1.7815 1.3571 -5.1753 13 6 2.0399 -0.7212 1.2493 14 1 3.1299 -0.7219 1.2495 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7015 3.7493 17 6 1.5532 -2.1445 3.7803 18 7 1.9148 -2.8023 2.5173 19 6 2.5904 -3.9685 2.5193 20 8 2.9652 -4.4560 1.4699 21 6 2.8748 -4.6520 3.7913 22 6 2.1045 -5.6273 4.4005 23 6 0.8064 -6.2092 3.9033 24 6 0.0357 -7.1297 4.8518 25 6 0.7630 -7.7156 3.6390 26 6 2.7868 -5.9583 5.5735 27 7 3.8690 -5.2247 5.6290 28 7 3.9523 -4.4516 4.6066 29 6 5.0402 -3.5045 4.3506 30 6 1.5312 -2.1616 1.2520 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6319 -1.1524 35 1 3.2503 -2.3960 -4.2413 36 1 0.4403 -0.0203 2.5110 37 1 1.8740 1.0341 2.4873 38 1 1.7221 -0.1736 4.6385 39 1 3.1563 -0.7034 3.7259 40 1 0.4692 -2.1442 3.8950 41 1 2.0108 -2.6772 4.6139 42 1 0.2248 -5.5655 3.2435 43 1 0.4674 -7.3139 5.8356 44 1 -1.0530 -7.0917 4.8157 45 1 0.1524 -8.0630 2.8056 46 1 1.6732 -8.2857 3.8252 47 1 2.4766 -6.6903 6.3045 48 1 4.7548 -2.5169 4.7130 49 1 5.9399 -3.8357 4.8692 50 1 5.2353 -3.4561 3.2794 51 1 1.9743 -2.7057 0.4179 52 1 0.4454 -2.1629 1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732531698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:20 Heat of formation + Delta-G solvation = 61.348044 kcal Electronic energy + Delta-G solvation = -31932.044215 eV Core-core repulsion = 27933.576348 eV Total energy + Delta-G solvation = -3998.467867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.65973 -41.23719 -39.20796 -38.16235 -37.00094 -34.73365 -34.12958 -33.29807 -32.13541 -31.29394 -29.43754 -28.13355 -26.86038 -26.26289 -24.78957 -24.57488 -23.49448 -23.12675 -22.24330 -21.08139 -20.47100 -19.89250 -19.30029 -18.70293 -17.78993 -16.90435 -16.86341 -16.66209 -16.56167 -15.95984 -15.89439 -15.51773 -15.36965 -15.30994 -15.16349 -14.71463 -14.32993 -14.16570 -14.05151 -13.91113 -13.84394 -13.72473 -13.37070 -12.99636 -12.99356 -12.84885 -12.67784 -12.35712 -12.33890 -12.14644 -12.02602 -11.94162 -11.81251 -11.78424 -11.67404 -11.48530 -11.27607 -11.23979 -11.15197 -10.93216 -10.19224 -9.76801 -9.54452 -9.00602 -7.92250 -5.21521 0.53931 0.95759 1.44887 1.46991 1.55412 1.56274 1.59968 1.94758 2.56049 3.04914 3.22163 3.40630 3.41282 3.68748 3.83076 3.86621 3.91731 3.95671 4.00374 4.09689 4.14318 4.15869 4.23008 4.25449 4.27734 4.35982 4.46178 4.48063 4.52207 4.61578 4.68372 4.77421 4.82202 4.83588 4.87245 4.89826 5.05709 5.07268 5.08539 5.12599 5.23095 5.24183 5.30433 5.32550 5.38391 5.44736 5.46999 5.54345 5.68473 5.69826 6.17059 6.28842 6.86208 6.99488 7.34108 8.12929 8.33419 9.31057 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002937 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.706118 B = 9532.512287 C =10019.627760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.079 0.921 7 C -0.081 4.081 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.090 4.090 14 H 0.048 0.952 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.106 3.894 18 N -0.587 5.587 19 C 0.586 3.414 20 O -0.572 6.572 21 C -0.035 4.035 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.138 4.138 25 C -0.177 4.177 26 C 0.010 3.990 27 N -0.291 5.291 28 N -0.275 5.275 29 C 0.079 3.921 30 C 0.124 3.876 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.215 0.785 48 H 0.108 0.892 49 H 0.121 0.879 50 H 0.075 0.925 51 H 0.051 0.949 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -2.733 26.715 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.067 0.933 4 N -0.383 5.383 5 C -0.366 4.366 6 H 0.097 0.903 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.226 1.226 12 H -0.191 1.191 13 C -0.110 4.110 14 H 0.067 0.933 15 C -0.145 4.145 16 C -0.164 4.164 17 C -0.015 4.015 18 N -0.319 5.319 19 C 0.372 3.628 20 O -0.450 6.450 21 C -0.164 4.164 22 C -0.137 4.137 23 C -0.128 4.128 24 C -0.175 4.175 25 C -0.214 4.214 26 C -0.167 4.167 27 N -0.122 5.122 28 N -0.063 5.063 29 C -0.061 4.061 30 C 0.002 3.998 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.115 0.885 46 H 0.112 0.888 47 H 0.231 0.769 48 H 0.127 0.873 49 H 0.139 0.861 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.896 -2.462 26.670 27.065 hybrid contribution -0.015 -0.370 -2.406 2.434 sum -3.911 -2.832 24.264 24.740 Atomic orbital electron populations 1.22409 0.97323 1.00862 1.01164 1.20468 0.93226 0.94958 0.84931 0.93269 1.42806 1.78500 1.10367 1.06581 1.19647 1.34477 0.94190 0.88329 0.90350 1.25587 1.03292 0.96793 1.01623 1.69867 1.52810 1.10435 1.29267 0.85166 0.77876 0.77433 0.79472 1.21605 1.22639 1.19066 1.21524 0.99435 0.93702 0.96327 0.93310 1.21618 1.01929 0.99443 0.91551 1.21927 1.01051 0.93923 0.99452 1.22013 1.01945 0.93911 0.83651 1.48166 1.54498 1.20281 1.08904 1.17464 0.77919 0.80716 0.86748 1.90895 1.53482 1.66336 1.34283 1.21029 0.94392 1.05343 0.95598 1.20003 0.98155 0.99004 0.96525 1.20173 0.94224 0.93359 1.04997 1.23106 0.99641 0.99712 0.94997 1.23077 1.03282 0.93772 1.01298 1.23790 0.91827 1.02246 0.98818 1.73143 1.22780 1.06770 1.09461 1.45731 1.17395 1.29562 1.13635 1.22429 0.88412 0.91804 1.03440 1.21545 1.00149 0.93433 0.84717 0.89869 0.94812 0.93894 0.79780 0.94344 0.89651 0.90120 0.87057 0.92095 0.89063 0.89895 0.88910 0.86552 0.86958 0.88452 0.88763 0.76892 0.87330 0.86104 0.90595 0.93042 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 8.79 71.98 0.63 -4.51 16 2 C 0.17 6.49 2.72 44.99 0.12 6.61 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.74 -38.03 5.04 -322.95 -1.63 -39.66 16 5 C -0.23 -13.21 9.93 84.04 0.83 -12.38 16 6 H 0.08 4.18 7.83 -2.92 -0.02 4.16 16 7 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 8 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 9 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C -0.09 -2.77 2.32 -10.86 -0.03 -2.80 16 14 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 15 C -0.11 -2.12 4.78 30.62 0.15 -1.97 16 16 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 17 C 0.11 1.97 6.32 86.36 0.55 2.52 16 18 N -0.59 -16.62 2.98 -823.92 -2.45 -19.08 16 19 C 0.59 19.89 6.89 86.59 0.60 20.49 16 20 O -0.57 -26.07 16.52 -4.12 -0.07 -26.14 16 21 C -0.04 -0.98 4.69 40.79 0.19 -0.79 16 22 C -0.13 -3.02 5.94 -19.48 -0.12 -3.14 16 23 C -0.11 -2.32 6.12 -11.54 -0.07 -2.39 16 24 C -0.14 -1.88 10.06 30.62 0.31 -1.58 16 25 C -0.18 -3.32 10.24 30.62 0.31 -3.01 16 26 C 0.01 0.20 11.41 85.18 0.97 1.18 16 27 N -0.29 -6.68 11.90 -57.14 -0.68 -7.36 16 28 N -0.28 -6.58 3.69 -356.04 -1.31 -7.89 16 29 C 0.08 1.42 11.10 127.77 1.42 2.83 16 30 C 0.12 4.16 5.21 86.22 0.45 4.61 16 31 H 0.08 1.98 6.46 -2.39 -0.02 1.96 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 1.44 6.32 -2.39 -0.02 1.42 16 34 H 0.37 21.10 6.17 -92.71 -0.57 20.53 16 35 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.08 1.46 6.50 -2.38 -0.02 1.45 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.49 6.33 -2.39 -0.02 1.47 16 42 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.12 1.14 7.12 -2.39 -0.02 1.12 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 47 H 0.21 2.66 7.34 -2.91 -0.02 2.63 16 48 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 1.66 7.93 -2.39 -0.02 1.64 16 51 H 0.05 2.31 5.57 -2.39 -0.01 2.29 16 52 H 0.08 2.61 6.16 -2.38 -0.01 2.60 16 Total: -1.00 -80.05 409.99 3.50 -76.55 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.36 Total: 36.92 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.97 Total: -0.41 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.79 Total: -136.45 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -80.05 3.50 -76.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.899 kcal (2) G-P(sol) polarization free energy of solvation -80.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds