Wall clock time and date at job start Wed Apr 1 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47173 * 2 1 4 4 N 1.46498 * 109.47431 * 120.00190 * 2 1 3 5 5 C 1.36939 * 119.99859 * 274.99951 * 4 2 1 6 6 H 1.08002 * 120.00117 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99741 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99794 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 59.99730 * 9 7 5 11 11 H 1.48499 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47159 * 299.99882 * 9 7 5 13 13 C 1.52999 * 109.47232 * 240.00408 * 2 1 3 14 14 H 1.09005 * 109.52238 * 299.91914 * 13 2 1 15 15 C 1.53042 * 109.49901 * 59.99248 * 13 2 1 16 16 C 1.53045 * 109.53726 * 181.31783 * 15 13 2 17 17 C 1.53190 * 109.31264 * 298.63755 * 16 15 13 18 18 N 1.46920 * 108.77558 * 54.63579 * 17 16 15 19 19 C 1.34781 * 120.63105 * 126.36917 * 18 17 16 20 20 O 1.21629 * 120.00170 * 185.11481 * 19 18 17 21 21 C 1.47166 * 120.00051 * 5.11133 * 19 18 17 22 22 C 1.38405 * 126.88085 * 92.58592 * 21 19 18 23 23 C 1.50699 * 127.32313 * 0.02562 * 22 21 19 24 24 C 1.52999 * 117.49566 * 188.74232 * 23 22 21 25 25 C 1.52998 * 117.49805 * 120.08225 * 23 22 21 26 26 C 1.39680 * 105.35607 * 179.97438 * 22 21 19 27 27 N 1.30862 * 107.86179 * 0.02562 * 26 22 21 28 28 N 1.28441 * 110.93138 * 0.02562 * 27 26 22 29 29 C 1.46494 * 125.19571 * 180.25981 * 28 27 26 30 30 C 1.46923 * 118.74185 * 306.64225 * 18 17 16 31 31 H 1.08997 * 109.47675 * 60.00455 * 1 2 3 32 32 H 1.09004 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47023 * 299.99643 * 1 2 3 34 34 H 0.97003 * 119.99812 * 95.00237 * 4 2 1 35 35 H 0.96999 * 119.99615 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45924 * 61.30200 * 15 13 2 37 37 H 1.08998 * 109.45210 * 301.33305 * 15 13 2 38 38 H 1.08998 * 109.49170 * 178.68803 * 16 15 13 39 39 H 1.09000 * 109.49339 * 58.59186 * 16 15 13 40 40 H 1.09000 * 109.58436 * 294.84416 * 17 16 15 41 41 H 1.09000 * 109.58379 * 174.42399 * 17 16 15 42 42 H 1.09000 * 115.54715 * 334.40971 * 23 22 21 43 43 H 1.09000 * 117.50345 * 359.97438 * 24 23 22 44 44 H 1.09008 * 117.49437 * 145.02255 * 24 23 22 45 45 H 1.09003 * 117.49487 * 214.97570 * 25 23 22 46 46 H 1.08999 * 117.50378 * 359.97438 * 25 23 22 47 47 H 1.08002 * 126.06728 * 179.97438 * 26 22 21 48 48 H 1.08998 * 109.47535 * 264.67525 * 29 28 27 49 49 H 1.09000 * 109.47160 * 24.67530 * 29 28 27 50 50 H 1.09004 * 109.47166 * 144.67202 * 29 28 27 51 51 H 1.08998 * 109.58978 * 173.14505 * 30 18 17 52 52 H 1.09007 * 109.58448 * 293.57161 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6115 -0.6620 3.5091 8 7 2.9245 -1.9390 3.4500 9 14 2.7892 0.2697 5.1185 10 1 1.4668 0.8065 5.5284 11 1 3.2984 -0.6487 6.1685 12 1 3.7446 1.3922 4.9377 13 6 2.0400 -0.7211 -1.2493 14 1 1.6783 -1.7494 -1.2495 15 6 1.5301 -0.0002 -2.4992 16 6 2.0125 -0.7398 -3.7493 17 6 3.5441 -0.7368 -3.7803 18 7 4.0437 -1.2969 -2.5173 19 6 4.9181 -2.3226 -2.5192 20 8 5.2528 -2.8384 -1.4698 21 6 5.4677 -2.8186 -3.7911 22 6 6.6439 -2.4174 -4.4004 23 6 7.6252 -1.3874 -3.9033 24 6 8.7499 -0.9676 -4.8519 25 6 9.0600 -1.8483 -3.6389 26 6 6.7286 -3.1710 -5.5734 27 7 5.6758 -3.9461 -5.6294 28 7 4.9188 -3.7665 -4.6074 29 6 3.6626 -4.4755 -4.3520 30 6 3.5676 -0.7217 -1.2519 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.2472 -2.3964 4.2422 36 1 1.9123 1.0205 -2.5111 37 1 0.4403 0.0202 -2.4873 38 1 1.6296 -0.2392 -4.6385 39 1 1.6511 -1.7679 -3.7258 40 1 3.9052 0.2853 -3.8950 41 1 3.8939 -1.3458 -4.6138 42 1 7.2121 -0.6243 -3.2436 43 1 8.7803 -1.4367 -5.8353 44 1 9.0770 0.0716 -4.8159 45 1 9.5909 -1.3882 -2.8055 46 1 9.2941 -2.8967 -3.8241 47 1 7.5218 -3.1220 -6.3047 48 1 2.8272 -3.8767 -4.7149 49 1 3.6746 -5.4342 -4.8705 50 1 3.5512 -4.6431 -3.2807 51 1 3.9329 -1.3207 -0.4178 52 1 3.9307 0.3017 -1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732531699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:27 Heat of formation + Delta-G solvation = 80.143818 kcal Electronic energy + Delta-G solvation = -31880.559589 eV Core-core repulsion = 27882.906768 eV Total energy + Delta-G solvation = -3997.652821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.71867 -39.94701 -37.77847 -37.36911 -35.48380 -33.31745 -33.01573 -31.82753 -31.10032 -29.77313 -28.22596 -27.28865 -25.60591 -24.36817 -23.63355 -23.09595 -22.55820 -22.16666 -20.82063 -20.14822 -19.59543 -19.03521 -17.73427 -17.06371 -16.67392 -15.89095 -15.82705 -15.56356 -14.96294 -14.89570 -14.44527 -14.42476 -14.15275 -13.96898 -13.76345 -13.40865 -13.11242 -13.10401 -12.92183 -12.86817 -12.68302 -12.37529 -12.13579 -12.04809 -11.66552 -11.39196 -11.17241 -11.14189 -11.03716 -10.85600 -10.81828 -10.73508 -10.64417 -10.46129 -10.31126 -10.19742 -10.04721 -9.78201 -9.55516 -9.25102 -8.89027 -8.63678 -8.55727 -6.92739 -5.71380 -3.01066 1.53428 2.03260 2.45138 2.71548 3.04613 3.46348 3.50776 3.52261 3.82920 4.20600 4.30117 4.59012 4.67931 4.70687 4.74121 4.82117 4.86123 4.90398 4.95506 5.03662 5.09129 5.16125 5.18803 5.30732 5.36645 5.41557 5.49553 5.59670 5.63716 5.70621 5.73824 5.76747 5.80412 5.87509 5.96299 5.98538 6.05524 6.08641 6.15416 6.18534 6.33047 6.39460 6.43286 6.46052 6.56764 6.67420 6.69369 6.89346 7.08083 7.37710 7.72953 7.91359 8.11470 8.46002 9.57209 10.14317 10.48620 11.50638 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.003154 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.747569 B = 8875.282344 C = 9960.749372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.010 4.010 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.109 3.891 18 N -0.597 5.597 19 C 0.585 3.415 20 O -0.507 6.507 21 C -0.010 4.010 22 C -0.128 4.128 23 C -0.081 4.081 24 C -0.170 4.170 25 C -0.168 4.168 26 C 0.007 3.993 27 N -0.286 5.286 28 N -0.274 5.274 29 C 0.085 3.915 30 C 0.122 3.878 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.182 0.818 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.109 0.891 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 0.935 -23.033 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.014 4.014 18 N -0.330 5.330 19 C 0.368 3.632 20 O -0.380 6.380 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.207 4.207 25 C -0.205 4.205 26 C -0.171 4.171 27 N -0.116 5.116 28 N -0.062 5.062 29 C -0.055 4.055 30 C 0.001 3.999 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.199 0.801 48 H 0.104 0.896 49 H 0.119 0.881 50 H 0.113 0.887 51 H 0.128 0.872 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.177 -0.156 -22.908 23.127 hybrid contribution 0.411 0.709 1.368 1.594 sum 3.587 0.553 -21.540 21.844 Atomic orbital electron populations 1.22482 0.99280 1.00785 0.99909 1.20162 0.91853 0.95268 0.85694 0.93458 1.42442 1.78111 1.10735 1.05275 1.19140 1.36986 0.93759 0.87355 0.91336 1.24726 1.02087 0.95910 0.97954 1.69653 1.50490 1.08599 1.28921 0.86324 0.77677 0.78651 0.83837 1.21393 1.21753 1.21305 1.21687 0.94508 1.00549 0.95494 0.91216 1.21640 1.01169 0.99145 0.93340 1.21926 0.94605 1.01447 0.99086 1.21706 0.94646 0.99421 0.85651 1.48149 1.42977 1.33575 1.08335 1.17096 0.79202 0.80265 0.86606 1.90934 1.58310 1.56964 1.31797 1.21294 0.97888 0.98779 0.95930 1.19741 0.95558 1.02200 0.96382 1.20152 0.88236 0.98650 1.03030 1.22982 1.02125 1.00502 0.95108 1.23018 0.97158 1.00467 0.99834 1.23298 0.97879 0.97025 0.98884 1.73136 1.04737 1.24208 1.09504 1.45514 1.18358 1.28394 1.13939 1.22219 0.81012 0.98076 1.04192 1.21716 0.94106 0.99235 0.84869 0.94298 0.93639 0.92837 0.78198 0.93463 0.91692 0.91039 0.90841 0.91818 0.91036 0.90706 0.87232 0.88584 0.88456 0.88391 0.88601 0.80079 0.89624 0.88060 0.88719 0.87249 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.14 37.16 0.34 -2.47 16 2 C 0.18 3.37 2.48 -67.93 -0.17 3.20 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.63 4.52 -53.43 -0.24 -17.87 16 5 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 C -0.10 -1.57 1.96 -90.72 -0.18 -1.74 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.31 4.85 -26.69 -0.13 -1.44 16 16 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 17 C 0.11 1.16 6.32 -3.71 -0.02 1.13 16 18 N -0.60 -8.45 2.98 -174.40 -0.52 -8.97 16 19 C 0.58 9.50 6.89 -12.63 -0.09 9.41 16 20 O -0.51 -10.66 16.52 5.25 0.09 -10.58 16 21 C -0.01 -0.14 4.69 -82.05 -0.39 -0.53 16 22 C -0.13 -1.61 5.94 -104.02 -0.62 -2.23 16 23 C -0.08 -0.92 6.12 -91.77 -0.56 -1.48 16 24 C -0.17 -1.42 10.06 -26.69 -0.27 -1.69 16 25 C -0.17 -1.68 10.24 -26.69 -0.27 -1.95 16 26 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 27 N -0.29 -3.55 11.90 30.59 0.36 -3.19 16 28 N -0.27 -3.39 3.69 -63.88 -0.24 -3.62 16 29 C 0.09 0.78 11.10 59.84 0.66 1.45 16 30 C 0.12 2.02 5.45 -3.93 -0.02 2.00 16 31 H 0.04 0.54 6.40 -51.93 -0.33 0.20 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 10.20 7.61 -40.82 -0.31 9.89 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 42 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.10 0.68 7.12 -51.93 -0.37 0.31 16 44 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.18 1.49 7.34 -52.49 -0.39 1.10 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 51 H 0.11 2.32 6.49 -51.93 -0.34 1.98 16 52 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -33.64 415.49 -9.59 -43.23 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.69 Total: 9.91 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.32 Total: -5.02 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.09 Total: -61.28 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.64 -9.59 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.369 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds