Wall clock time and date at job start Wed Apr 1 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47173 * 2 1 4 4 N 1.46498 * 109.47431 * 120.00190 * 2 1 3 5 5 C 1.36939 * 119.99859 * 274.99951 * 4 2 1 6 6 H 1.08002 * 120.00117 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99741 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00276 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99794 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 59.99730 * 9 7 5 11 11 H 1.48499 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47159 * 299.99882 * 9 7 5 13 13 C 1.52999 * 109.47232 * 240.00408 * 2 1 3 14 14 H 1.09005 * 109.52238 * 299.91914 * 13 2 1 15 15 C 1.53042 * 109.49901 * 59.99248 * 13 2 1 16 16 C 1.53045 * 109.53726 * 181.31783 * 15 13 2 17 17 C 1.53190 * 109.31264 * 298.63755 * 16 15 13 18 18 N 1.46920 * 108.77558 * 54.63579 * 17 16 15 19 19 C 1.34781 * 120.63105 * 126.36917 * 18 17 16 20 20 O 1.21629 * 120.00170 * 185.11481 * 19 18 17 21 21 C 1.47166 * 120.00051 * 5.11133 * 19 18 17 22 22 C 1.38405 * 126.88085 * 92.58592 * 21 19 18 23 23 C 1.50699 * 127.32313 * 0.02562 * 22 21 19 24 24 C 1.52999 * 117.49566 * 188.74232 * 23 22 21 25 25 C 1.52998 * 117.49805 * 120.08225 * 23 22 21 26 26 C 1.39680 * 105.35607 * 179.97438 * 22 21 19 27 27 N 1.30862 * 107.86179 * 0.02562 * 26 22 21 28 28 N 1.28441 * 110.93138 * 0.02562 * 27 26 22 29 29 C 1.46494 * 125.19571 * 180.25981 * 28 27 26 30 30 C 1.46923 * 118.74185 * 306.64225 * 18 17 16 31 31 H 1.08997 * 109.47675 * 60.00455 * 1 2 3 32 32 H 1.09004 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47023 * 299.99643 * 1 2 3 34 34 H 0.97003 * 119.99812 * 95.00237 * 4 2 1 35 35 H 0.96999 * 119.99615 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.45924 * 61.30200 * 15 13 2 37 37 H 1.08998 * 109.45210 * 301.33305 * 15 13 2 38 38 H 1.08998 * 109.49170 * 178.68803 * 16 15 13 39 39 H 1.09000 * 109.49339 * 58.59186 * 16 15 13 40 40 H 1.09000 * 109.58436 * 294.84416 * 17 16 15 41 41 H 1.09000 * 109.58379 * 174.42399 * 17 16 15 42 42 H 1.09000 * 115.54715 * 334.40971 * 23 22 21 43 43 H 1.09000 * 117.50345 * 359.97438 * 24 23 22 44 44 H 1.09008 * 117.49437 * 145.02255 * 24 23 22 45 45 H 1.09003 * 117.49487 * 214.97570 * 25 23 22 46 46 H 1.08999 * 117.50378 * 359.97438 * 25 23 22 47 47 H 1.08002 * 126.06728 * 179.97438 * 26 22 21 48 48 H 1.08998 * 109.47535 * 264.67525 * 29 28 27 49 49 H 1.09000 * 109.47160 * 24.67530 * 29 28 27 50 50 H 1.09004 * 109.47166 * 144.67202 * 29 28 27 51 51 H 1.08998 * 109.58978 * 173.14505 * 30 18 17 52 52 H 1.09007 * 109.58448 * 293.57161 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6115 -0.6620 3.5091 8 7 2.9245 -1.9390 3.4500 9 14 2.7892 0.2697 5.1185 10 1 1.4668 0.8065 5.5284 11 1 3.2984 -0.6487 6.1685 12 1 3.7446 1.3922 4.9377 13 6 2.0400 -0.7211 -1.2493 14 1 1.6783 -1.7494 -1.2495 15 6 1.5301 -0.0002 -2.4992 16 6 2.0125 -0.7398 -3.7493 17 6 3.5441 -0.7368 -3.7803 18 7 4.0437 -1.2969 -2.5173 19 6 4.9181 -2.3226 -2.5192 20 8 5.2528 -2.8384 -1.4698 21 6 5.4677 -2.8186 -3.7911 22 6 6.6439 -2.4174 -4.4004 23 6 7.6252 -1.3874 -3.9033 24 6 8.7499 -0.9676 -4.8519 25 6 9.0600 -1.8483 -3.6389 26 6 6.7286 -3.1710 -5.5734 27 7 5.6758 -3.9461 -5.6294 28 7 4.9188 -3.7665 -4.6074 29 6 3.6626 -4.4755 -4.3520 30 6 3.5676 -0.7217 -1.2519 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.2472 -2.3964 4.2422 36 1 1.9123 1.0205 -2.5111 37 1 0.4403 0.0202 -2.4873 38 1 1.6296 -0.2392 -4.6385 39 1 1.6511 -1.7679 -3.7258 40 1 3.9052 0.2853 -3.8950 41 1 3.8939 -1.3458 -4.6138 42 1 7.2121 -0.6243 -3.2436 43 1 8.7803 -1.4367 -5.8353 44 1 9.0770 0.0716 -4.8159 45 1 9.5909 -1.3882 -2.8055 46 1 9.2941 -2.8967 -3.8241 47 1 7.5218 -3.1220 -6.3047 48 1 2.8272 -3.8767 -4.7149 49 1 3.6746 -5.4342 -4.8705 50 1 3.5512 -4.6431 -3.2807 51 1 3.9329 -1.3207 -0.4178 52 1 3.9307 0.3017 -1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732531699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:26 Heat of formation + Delta-G solvation = 59.393642 kcal Electronic energy + Delta-G solvation = -31881.459384 eV Core-core repulsion = 27882.906768 eV Total energy + Delta-G solvation = -3998.552616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.65840 -41.17253 -39.12775 -38.16967 -37.01418 -34.71386 -34.12957 -33.22952 -32.19722 -31.25874 -29.80035 -28.11590 -26.78664 -25.99932 -24.78446 -24.35012 -23.41616 -23.11885 -22.01997 -21.13002 -20.91663 -20.06439 -19.17042 -18.72404 -17.78137 -16.89115 -16.86243 -16.74452 -16.48815 -16.07242 -15.64261 -15.51909 -15.34913 -15.26876 -15.12022 -14.65522 -14.32805 -14.10493 -14.06828 -13.87881 -13.82133 -13.71690 -13.43564 -13.02822 -12.99402 -12.75455 -12.57260 -12.41170 -12.34750 -12.20066 -12.06617 -12.01713 -11.85898 -11.72200 -11.67291 -11.46890 -11.29002 -11.25663 -11.13574 -10.92034 -10.18874 -9.79030 -9.54711 -8.98089 -7.91018 -5.19362 0.53893 0.96512 1.45289 1.48520 1.54453 1.56170 1.59915 1.95860 2.57028 3.04109 3.23041 3.41058 3.42541 3.67715 3.81011 3.87972 3.92806 3.95266 4.02296 4.09547 4.16792 4.18118 4.23618 4.24933 4.27524 4.38520 4.46947 4.48407 4.54745 4.61295 4.72296 4.81240 4.84837 4.87391 4.88093 4.90690 5.00827 5.04739 5.05069 5.12124 5.23116 5.26654 5.29535 5.34144 5.39016 5.46259 5.48863 5.56066 5.64170 5.70014 6.18454 6.29893 6.87070 6.99457 7.35498 8.13755 8.34825 9.32213 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.003154 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.747569 B = 8875.282344 C = 9960.749372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.737 5.737 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.968 3.032 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.278 1.278 13 C -0.088 4.088 14 H 0.054 0.946 15 C -0.108 4.108 16 C -0.125 4.125 17 C 0.106 3.894 18 N -0.588 5.588 19 C 0.586 3.414 20 O -0.572 6.572 21 C -0.035 4.035 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.177 4.177 26 C 0.010 3.990 27 N -0.290 5.290 28 N -0.275 5.275 29 C 0.078 3.922 30 C 0.129 3.871 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.215 0.785 48 H 0.109 0.891 49 H 0.121 0.879 50 H 0.076 0.924 51 H 0.054 0.946 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 2.892 -26.723 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.067 0.933 4 N -0.377 5.377 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.204 1.204 13 C -0.108 4.108 14 H 0.072 0.928 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.016 4.016 18 N -0.319 5.319 19 C 0.372 3.628 20 O -0.450 6.450 21 C -0.164 4.164 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.174 4.174 25 C -0.214 4.214 26 C -0.167 4.167 27 N -0.121 5.121 28 N -0.063 5.063 29 C -0.061 4.061 30 C 0.007 3.993 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.199 0.801 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.231 0.769 48 H 0.127 0.873 49 H 0.139 0.861 50 H 0.095 0.905 51 H 0.073 0.927 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.468 1.874 -26.676 26.856 hybrid contribution 0.621 0.145 2.429 2.511 sum 3.089 2.018 -24.248 24.527 Atomic orbital electron populations 1.22320 0.97302 1.00633 1.01057 1.20467 0.93063 0.95021 0.84973 0.93349 1.42681 1.78412 1.10148 1.06487 1.19576 1.34563 0.94129 0.88284 0.90429 1.25533 1.03273 0.96763 1.01477 1.69842 1.52808 1.10394 1.29202 0.85284 0.77987 0.77285 0.79670 1.20218 1.22722 1.20443 1.21524 0.93148 0.99906 0.96257 0.92789 1.21624 1.02030 0.99321 0.91611 1.21925 0.93166 1.01746 0.99427 1.22009 0.95762 1.00111 0.83696 1.48180 1.42039 1.32754 1.08926 1.17460 0.78648 0.79985 0.86732 1.90896 1.60655 1.59171 1.34302 1.21029 0.99228 1.00525 0.95569 1.19998 0.94943 1.02248 0.96576 1.20167 0.88824 0.98826 1.05006 1.23108 0.98223 1.01054 0.95004 1.23074 0.96060 1.00997 1.01286 1.23786 0.98151 0.95956 0.98785 1.73137 1.05143 1.24331 1.09482 1.45739 1.18985 1.27971 1.13578 1.22444 0.80750 0.99412 1.03506 1.21394 0.95200 0.98085 0.84599 0.89969 0.94441 0.94781 0.80094 0.94412 0.90440 0.89432 0.87110 0.91796 0.89419 0.89886 0.89107 0.86470 0.87000 0.88541 0.88687 0.76886 0.87265 0.86096 0.90509 0.92740 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.17 6.45 2.48 44.99 0.11 6.56 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.74 -37.37 4.52 -322.95 -1.46 -38.83 16 5 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 8 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 9 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C -0.09 -2.69 1.96 -10.86 -0.02 -2.71 16 14 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 15 C -0.11 -2.12 4.85 30.62 0.15 -1.97 16 16 C -0.12 -1.90 6.08 30.67 0.19 -1.72 16 17 C 0.11 2.01 6.32 86.36 0.55 2.56 16 18 N -0.59 -17.01 2.98 -823.92 -2.45 -19.47 16 19 C 0.59 20.19 6.89 86.59 0.60 20.79 16 20 O -0.57 -26.44 16.52 -4.12 -0.07 -26.51 16 21 C -0.04 -0.99 4.69 40.79 0.19 -0.79 16 22 C -0.13 -3.10 5.94 -19.48 -0.12 -3.22 16 23 C -0.11 -2.42 6.12 -11.54 -0.07 -2.49 16 24 C -0.14 -1.95 10.06 30.62 0.31 -1.64 16 25 C -0.18 -3.43 10.24 30.62 0.31 -3.12 16 26 C 0.01 0.21 11.41 85.19 0.97 1.18 16 27 N -0.29 -6.68 11.90 -57.13 -0.68 -7.36 16 28 N -0.27 -6.56 3.69 -356.03 -1.31 -7.87 16 29 C 0.08 1.38 11.10 127.77 1.42 2.80 16 30 C 0.13 4.51 5.45 86.22 0.47 4.98 16 31 H 0.08 1.98 6.40 -2.39 -0.02 1.97 16 32 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.37 20.85 7.61 -92.71 -0.71 20.15 16 35 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.09 1.50 6.36 -2.39 -0.02 1.49 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.52 6.33 -2.39 -0.02 1.50 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.12 1.19 7.12 -2.39 -0.02 1.17 16 44 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.21 2.70 7.34 -2.91 -0.02 2.68 16 48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.08 1.63 7.93 -2.38 -0.02 1.61 16 51 H 0.05 2.53 6.49 -2.39 -0.02 2.52 16 52 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -79.32 415.49 3.56 -75.76 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.21 Total: 36.35 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 7.01 Total: 0.43 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -5.62 Total: -135.57 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.32 3.56 -75.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732531699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.151 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds