Wall clock time and date at job start Wed Apr 1 2020 05:29:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.47173 * 2 1
4 4 N 1.46498 * 109.47431 * 120.00190 * 2 1 3
5 5 C 1.36939 * 119.99859 * 274.99951 * 4 2 1
6 6 H 1.08002 * 120.00117 * 359.97438 * 5 4 2
7 7 C 1.38809 * 119.99741 * 179.97438 * 5 4 2
8 8 N 1.31616 * 120.00276 * 0.02562 * 7 5 4
9 9 Si 1.86803 * 119.99794 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47237 * 59.99730 * 9 7 5
11 11 H 1.48499 * 109.47340 * 180.02562 * 9 7 5
12 12 H 1.48504 * 109.47159 * 299.99882 * 9 7 5
13 13 C 1.52999 * 109.47232 * 240.00408 * 2 1 3
14 14 H 1.09005 * 109.52238 * 299.91914 * 13 2 1
15 15 C 1.53042 * 109.49901 * 59.99248 * 13 2 1
16 16 C 1.53045 * 109.53726 * 181.31783 * 15 13 2
17 17 C 1.53190 * 109.31264 * 298.63755 * 16 15 13
18 18 N 1.46920 * 108.77558 * 54.63579 * 17 16 15
19 19 C 1.34781 * 120.63105 * 126.36917 * 18 17 16
20 20 O 1.21629 * 120.00170 * 185.11481 * 19 18 17
21 21 C 1.47166 * 120.00051 * 5.11133 * 19 18 17
22 22 C 1.38405 * 126.88085 * 92.58592 * 21 19 18
23 23 C 1.50699 * 127.32313 * 0.02562 * 22 21 19
24 24 C 1.52999 * 117.49566 * 188.74232 * 23 22 21
25 25 C 1.52998 * 117.49805 * 120.08225 * 23 22 21
26 26 C 1.39680 * 105.35607 * 179.97438 * 22 21 19
27 27 N 1.30862 * 107.86179 * 0.02562 * 26 22 21
28 28 N 1.28441 * 110.93138 * 0.02562 * 27 26 22
29 29 C 1.46494 * 125.19571 * 180.25981 * 28 27 26
30 30 C 1.46923 * 118.74185 * 306.64225 * 18 17 16
31 31 H 1.08997 * 109.47675 * 60.00455 * 1 2 3
32 32 H 1.09004 * 109.46758 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47023 * 299.99643 * 1 2 3
34 34 H 0.97003 * 119.99812 * 95.00237 * 4 2 1
35 35 H 0.96999 * 119.99615 * 180.02562 * 8 7 5
36 36 H 1.09006 * 109.45924 * 61.30200 * 15 13 2
37 37 H 1.08998 * 109.45210 * 301.33305 * 15 13 2
38 38 H 1.08998 * 109.49170 * 178.68803 * 16 15 13
39 39 H 1.09000 * 109.49339 * 58.59186 * 16 15 13
40 40 H 1.09000 * 109.58436 * 294.84416 * 17 16 15
41 41 H 1.09000 * 109.58379 * 174.42399 * 17 16 15
42 42 H 1.09000 * 115.54715 * 334.40971 * 23 22 21
43 43 H 1.09000 * 117.50345 * 359.97438 * 24 23 22
44 44 H 1.09008 * 117.49437 * 145.02255 * 24 23 22
45 45 H 1.09003 * 117.49487 * 214.97570 * 25 23 22
46 46 H 1.08999 * 117.50378 * 359.97438 * 25 23 22
47 47 H 1.08002 * 126.06728 * 179.97438 * 26 22 21
48 48 H 1.08998 * 109.47535 * 264.67525 * 29 28 27
49 49 H 1.09000 * 109.47160 * 24.67530 * 29 28 27
50 50 H 1.09004 * 109.47166 * 144.67202 * 29 28 27
51 51 H 1.08998 * 109.58978 * 173.14505 * 30 18 17
52 52 H 1.09007 * 109.58448 * 293.57161 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1492 -0.0075 2.3757
6 1 1.8927 1.0405 2.4241
7 6 2.6115 -0.6620 3.5091
8 7 2.9245 -1.9390 3.4500
9 14 2.7892 0.2697 5.1185
10 1 1.4668 0.8065 5.5284
11 1 3.2984 -0.6487 6.1685
12 1 3.7446 1.3922 4.9377
13 6 2.0400 -0.7211 -1.2493
14 1 1.6783 -1.7494 -1.2495
15 6 1.5301 -0.0002 -2.4992
16 6 2.0125 -0.7398 -3.7493
17 6 3.5441 -0.7368 -3.7803
18 7 4.0437 -1.2969 -2.5173
19 6 4.9181 -2.3226 -2.5192
20 8 5.2528 -2.8384 -1.4698
21 6 5.4677 -2.8186 -3.7911
22 6 6.6439 -2.4174 -4.4004
23 6 7.6252 -1.3874 -3.9033
24 6 8.7499 -0.9676 -4.8519
25 6 9.0600 -1.8483 -3.6389
26 6 6.7286 -3.1710 -5.5734
27 7 5.6758 -3.9461 -5.6294
28 7 4.9188 -3.7665 -4.6074
29 6 3.6626 -4.4755 -4.3520
30 6 3.5676 -0.7217 -1.2519
31 1 -0.3634 0.5137 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 2.2491 -1.6318 1.1525
35 1 3.2472 -2.3964 4.2422
36 1 1.9123 1.0205 -2.5111
37 1 0.4403 0.0202 -2.4873
38 1 1.6296 -0.2392 -4.6385
39 1 1.6511 -1.7679 -3.7258
40 1 3.9052 0.2853 -3.8950
41 1 3.8939 -1.3458 -4.6138
42 1 7.2121 -0.6243 -3.2436
43 1 8.7803 -1.4367 -5.8353
44 1 9.0770 0.0716 -4.8159
45 1 9.5909 -1.3882 -2.8055
46 1 9.2941 -2.8967 -3.8241
47 1 7.5218 -3.1220 -6.3047
48 1 2.8272 -3.8767 -4.7149
49 1 3.6746 -5.4342 -4.8705
50 1 3.5512 -4.6431 -3.2807
51 1 3.9329 -1.3207 -0.4178
52 1 3.9307 0.3017 -1.1562
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732531699.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:26
Heat of formation + Delta-G solvation = 59.393642 kcal
Electronic energy + Delta-G solvation = -31881.459384 eV
Core-core repulsion = 27882.906768 eV
Total energy + Delta-G solvation = -3998.552616 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-43.65840 -41.17253 -39.12775 -38.16967 -37.01418 -34.71386 -34.12957 -33.22952
-32.19722 -31.25874 -29.80035 -28.11590 -26.78664 -25.99932 -24.78446 -24.35012
-23.41616 -23.11885 -22.01997 -21.13002 -20.91663 -20.06439 -19.17042 -18.72404
-17.78137 -16.89115 -16.86243 -16.74452 -16.48815 -16.07242 -15.64261 -15.51909
-15.34913 -15.26876 -15.12022 -14.65522 -14.32805 -14.10493 -14.06828 -13.87881
-13.82133 -13.71690 -13.43564 -13.02822 -12.99402 -12.75455 -12.57260 -12.41170
-12.34750 -12.20066 -12.06617 -12.01713 -11.85898 -11.72200 -11.67291 -11.46890
-11.29002 -11.25663 -11.13574 -10.92034 -10.18874 -9.79030 -9.54711 -8.98089
-7.91018 -5.19362 0.53893 0.96512 1.45289 1.48520 1.54453 1.56170
1.59915 1.95860 2.57028 3.04109 3.23041 3.41058 3.42541 3.67715
3.81011 3.87972 3.92806 3.95266 4.02296 4.09547 4.16792 4.18118
4.23618 4.24933 4.27524 4.38520 4.46947 4.48407 4.54745 4.61295
4.72296 4.81240 4.84837 4.87391 4.88093 4.90690 5.00827 5.04739
5.05069 5.12124 5.23116 5.26654 5.29535 5.34144 5.39016 5.46259
5.48863 5.56066 5.64170 5.70014 6.18454 6.29893 6.87070 6.99457
7.35498 8.13755 8.34825 9.32213
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.011783 B = 0.003154 C = 0.002810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2375.747569 B = 8875.282344 C = 9960.749372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.173 3.827
3 H 0.048 0.952
4 N -0.737 5.737
5 C -0.234 4.234
6 H 0.078 0.922
7 C -0.079 4.079
8 N -0.971 5.971
9 Si 0.968 3.032
10 H -0.276 1.276
11 H -0.301 1.301
12 H -0.278 1.278
13 C -0.088 4.088
14 H 0.054 0.946
15 C -0.108 4.108
16 C -0.125 4.125
17 C 0.106 3.894
18 N -0.588 5.588
19 C 0.586 3.414
20 O -0.572 6.572
21 C -0.035 4.035
22 C -0.127 4.127
23 C -0.109 4.109
24 C -0.137 4.137
25 C -0.177 4.177
26 C 0.010 3.990
27 N -0.290 5.290
28 N -0.275 5.275
29 C 0.078 3.922
30 C 0.129 3.871
31 H 0.082 0.918
32 H 0.036 0.964
33 H 0.033 0.967
34 H 0.368 0.632
35 H 0.247 0.753
36 H 0.077 0.923
37 H 0.087 0.913
38 H 0.111 0.889
39 H 0.063 0.937
40 H 0.088 0.912
41 H 0.083 0.917
42 H 0.091 0.909
43 H 0.117 0.883
44 H 0.112 0.888
45 H 0.096 0.904
46 H 0.095 0.905
47 H 0.215 0.785
48 H 0.109 0.891
49 H 0.121 0.879
50 H 0.076 0.924
51 H 0.054 0.946
52 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.001 2.892 -26.723 27.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.065 3.935
3 H 0.067 0.933
4 N -0.377 5.377
5 C -0.366 4.366
6 H 0.096 0.904
7 C -0.270 4.270
8 N -0.622 5.622
9 Si 0.798 3.202
10 H -0.202 1.202
11 H -0.227 1.227
12 H -0.204 1.204
13 C -0.108 4.108
14 H 0.072 0.928
15 C -0.146 4.146
16 C -0.163 4.163
17 C -0.016 4.016
18 N -0.319 5.319
19 C 0.372 3.628
20 O -0.450 6.450
21 C -0.164 4.164
22 C -0.138 4.138
23 C -0.128 4.128
24 C -0.174 4.174
25 C -0.214 4.214
26 C -0.167 4.167
27 N -0.121 5.121
28 N -0.063 5.063
29 C -0.061 4.061
30 C 0.007 3.993
31 H 0.100 0.900
32 H 0.056 0.944
33 H 0.052 0.948
34 H 0.199 0.801
35 H 0.056 0.944
36 H 0.096 0.904
37 H 0.106 0.894
38 H 0.129 0.871
39 H 0.082 0.918
40 H 0.106 0.894
41 H 0.101 0.899
42 H 0.109 0.891
43 H 0.135 0.865
44 H 0.130 0.870
45 H 0.115 0.885
46 H 0.113 0.887
47 H 0.231 0.769
48 H 0.127 0.873
49 H 0.139 0.861
50 H 0.095 0.905
51 H 0.073 0.927
52 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 2.468 1.874 -26.676 26.856
hybrid contribution 0.621 0.145 2.429 2.511
sum 3.089 2.018 -24.248 24.527
Atomic orbital electron populations
1.22320 0.97302 1.00633 1.01057 1.20467 0.93063 0.95021 0.84973
0.93349 1.42681 1.78412 1.10148 1.06487 1.19576 1.34563 0.94129
0.88284 0.90429 1.25533 1.03273 0.96763 1.01477 1.69842 1.52808
1.10394 1.29202 0.85284 0.77987 0.77285 0.79670 1.20218 1.22722
1.20443 1.21524 0.93148 0.99906 0.96257 0.92789 1.21624 1.02030
0.99321 0.91611 1.21925 0.93166 1.01746 0.99427 1.22009 0.95762
1.00111 0.83696 1.48180 1.42039 1.32754 1.08926 1.17460 0.78648
0.79985 0.86732 1.90896 1.60655 1.59171 1.34302 1.21029 0.99228
1.00525 0.95569 1.19998 0.94943 1.02248 0.96576 1.20167 0.88824
0.98826 1.05006 1.23108 0.98223 1.01054 0.95004 1.23074 0.96060
1.00997 1.01286 1.23786 0.98151 0.95956 0.98785 1.73137 1.05143
1.24331 1.09482 1.45739 1.18985 1.27971 1.13578 1.22444 0.80750
0.99412 1.03506 1.21394 0.95200 0.98085 0.84599 0.89969 0.94441
0.94781 0.80094 0.94412 0.90440 0.89432 0.87110 0.91796 0.89419
0.89886 0.89107 0.86470 0.87000 0.88541 0.88687 0.76886 0.87265
0.86096 0.90509 0.92740 0.91141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.03 9.14 71.98 0.66 -4.37 16
2 C 0.17 6.45 2.48 44.99 0.11 6.56 16
3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16
4 N -0.74 -37.37 4.52 -322.95 -1.46 -38.83 16
5 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16
6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16
7 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16
8 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16
9 Si 0.97 47.52 29.55 68.60 2.03 49.55 16
10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16
11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16
12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16
13 C -0.09 -2.69 1.96 -10.86 -0.02 -2.71 16
14 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16
15 C -0.11 -2.12 4.85 30.62 0.15 -1.97 16
16 C -0.12 -1.90 6.08 30.67 0.19 -1.72 16
17 C 0.11 2.01 6.32 86.36 0.55 2.56 16
18 N -0.59 -17.01 2.98 -823.92 -2.45 -19.47 16
19 C 0.59 20.19 6.89 86.59 0.60 20.79 16
20 O -0.57 -26.44 16.52 -4.12 -0.07 -26.51 16
21 C -0.04 -0.99 4.69 40.79 0.19 -0.79 16
22 C -0.13 -3.10 5.94 -19.48 -0.12 -3.22 16
23 C -0.11 -2.42 6.12 -11.54 -0.07 -2.49 16
24 C -0.14 -1.95 10.06 30.62 0.31 -1.64 16
25 C -0.18 -3.43 10.24 30.62 0.31 -3.12 16
26 C 0.01 0.21 11.41 85.19 0.97 1.18 16
27 N -0.29 -6.68 11.90 -57.13 -0.68 -7.36 16
28 N -0.27 -6.56 3.69 -356.03 -1.31 -7.87 16
29 C 0.08 1.38 11.10 127.77 1.42 2.80 16
30 C 0.13 4.51 5.45 86.22 0.47 4.98 16
31 H 0.08 1.98 6.40 -2.39 -0.02 1.97 16
32 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16
33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16
34 H 0.37 20.85 7.61 -92.71 -0.71 20.15 16
35 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16
36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16
37 H 0.09 1.50 6.36 -2.39 -0.02 1.49 16
38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
41 H 0.08 1.52 6.33 -2.39 -0.02 1.50 16
42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
43 H 0.12 1.19 7.12 -2.39 -0.02 1.17 16
44 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16
45 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16
46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
47 H 0.21 2.70 7.34 -2.91 -0.02 2.68 16
48 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16
50 H 0.08 1.63 7.93 -2.38 -0.02 1.61 16
51 H 0.05 2.53 6.49 -2.39 -0.02 2.52 16
52 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16
Total: -1.00 -79.32 415.49 3.56 -75.76
By element:
Atomic # 1 Polarization: 36.13 SS G_CDS: 0.21 Total: 36.35 kcal
Atomic # 6 Polarization: -6.58 SS G_CDS: 7.01 Total: 0.43 kcal
Atomic # 7 Polarization: -129.95 SS G_CDS: -5.62 Total: -135.57 kcal
Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal
Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal
Total: -79.32 3.56 -75.76 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732531699.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.151 kcal
(2) G-P(sol) polarization free energy of solvation -79.320 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.394 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds